Prupe.6G199200_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022443
Physical Location & Seq
Reverse (-)
20579696 .. 20581419
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G199200.1

Sequence Viewer

Length: 1410 bp
ATGGTTTACCCGTCGCACACTTTTGCGCGACGAAGGGTTGTACCTCGTCGAGCAAAGGCTTTCTTCACGATCTTCGCGCGACGGAATATGCGCGACGACGTTTTTGTCGCGCTGAAATTGGGGCGACTAAATGCGACTTTGCGCGACGTTTTTTTCTTCGTCGCGCAAAAACCAATGAAGAGCATCTTGTTGCTTAGTTTCAATGATTTGCCATACCGGTTGAAGCAATGCTTTCTATATTGTTGCCTTTTCCCAGAAGATCATGTGATCGTAAATCATAGGCTCATTAGATTGTGGATTGCTGAAGGATTTGTTGAGCATGTCAAAGGGGTCACCCCAGAAGAAGTTGCAAAGAGCTATATTATGGGACTCGTTTTCCGTAACATGCTACAGGAAATGTATCGAGATTACCACCCAGCATGTAAGATGCATGATCTTTTGCGGGAGATTGCTCTGTCTATAGCAAAAAAAGAAAAGTTTTGCGTTGTACATGATGGGAGTGAAACAGTAGAAGAAATTGGGGCACTTCGTTTGTCAATTCAAACAACTAATGGAGAAATTGGATCATGCACAGGTATATCACGGCTTCGTTCGTTTCTCGTCTTTGCCACTGGCTTATCCTCATTCTCTTTCTCAAATAAATCACCTTTTGACCTTAAATTGTTGAAGGTTCTAGATTTGGAGGATGTCCCACTTGATAATCTGCCAGACAATCTAACGTCCATTTCTGGAAAGGCAATTGGGGTAAGAATACCATCAAGTATTAGTAAGATGAAGAAATTGCAATCTTTGGCATATATTGAATCAGAAGGAAACATTATTAGACTTATTGGAAGTATGACGCAGCTTACGTTACTTGGCATTACAAATGTGAAAGAAAGAGACGAGGAGGACCTATGTGCCTCAATTCAAGAGATGAAGCTGATGGAGAGGAATTTCTTCGAGTTGAGGAATTTCTTCGAGGATAGACTTTATTTGAGCGGCAAACTGGAAAAGGTAAAACATTGGTTTTGCTCACTCCACTGTCTCACAGATTTGTTTCTCGGTGATTCTAGACTTGAAGAAAATTTACTACCTCATATTGAAGCATTGCGCTCTCTACGTTTGCTTTGCCTTGATAATTCGTCTATTAGGAAAGAGTCGTGTTTCAGTAGAGGCTTTGTAAATCTTAGATATTTAGAGGTTCTAAATTTCTCATTCTTAAATAAGATAACTATAGAAAAAGGGGTGATGTCAAATCTCGAGTTCTTAGACATTAGTAAGTGCTTGAGATTAGAGACATTGCCACAGGGTATTGAGCACCTTACTAAACTACAAGGATACGTATTTGAGAGTGTTTCAAAGCAATTTACAGAATCCATACGAGAAGGAGGTGTGGATAAGGATGCTAACTGTCGACGAGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

470

Amino Acids

54.01

Weight (kDa)

8.68

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022443)

Species Orthologous Gene IDs
prunus_persica Prupe.2G067900_v2.0.a1 Prupe.6G199200_v2.0.a1 Prupe.6G199900_v2.0.a1 Prupe.6G200100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 981
AccI GTMKAC 1 cut(s) 1396
AccII CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
AciI CCGC 2 cut(s) 442, 981
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 4 cut(s) 934, 952, 1066, 1189
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 42, 489
AflIII ACRYGT 1 cut(s) 1404
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 9 cut(s) 202, 223, 542, 667, 803, 911, 1061, 1085, 1341
AluBI AGCT 3 cut(s) 357, 847, 922
AluI AGCT 3 cut(s) 357, 847, 922
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 4 cut(s) 876, 1031, 1271, 1395
AlwI GGATC 1 cut(s) 571
Ama87I CYCGRG 1 cut(s) 1241
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 4 cut(s) 934, 952, 1066, 1189
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AsiGI ACCGGT 1 cut(s) 216
Asp700I GAANNNNTTC 2 cut(s) 938, 956
AspLEI GCGC 7 cut(s) 28, 79, 93, 112, 144, 166, 1095
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 4 cut(s) 325, 636, 1058, 1240
AvaI CYCGRG 1 cut(s) 1241
AvaII GGWCC 1 cut(s) 892
BaeGI GKGCMC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 1053, 1085
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 1 cut(s) 856
BccI CCATC 3 cut(s) 488, 763, 919
BceAI ACGGC 1 cut(s) 599
BciVI GTATCC 1 cut(s) 1313
BcoDI GTCTC 4 cut(s) 876, 1031, 1271, 1395
BfaI CTAG 2 cut(s) 674, 1053
BfmI CTRYAG 3 cut(s) 389, 459, 1215
BfuI GTATCC 1 cut(s) 1313
BisI GCNGC 2 cut(s) 845, 982
BlsI GCNGC 2 cut(s) 846, 983
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 1241
BmgT120I GGNCC 1 cut(s) 892
BmsI GCATC 3 cut(s) 192, 417, 1375
BpuEI CTTGAG 1 cut(s) 1288
BsaAI YACGTR 1 cut(s) 1324
BsaWI WCCGGW 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 616, 993
Bse3DI GCAATG 3 cut(s) 233, 1088, 1280
BseGI GGATG 2 cut(s) 691, 1390
BseMI GCAATG 3 cut(s) 233, 1088, 1280
BseNI ACTGG 2 cut(s) 616, 993
BseRI GAGGAG 1 cut(s) 902
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 856
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
BshTI ACCGGT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 1302
BsiHKCI CYCGRG 1 cut(s) 1241
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 2 cut(s) 381, 674
BsmAI GTCTC 4 cut(s) 876, 1031, 1271, 1395
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 2 cut(s) 381, 674
BsoBI CYCGRG 1 cut(s) 1241
Bsp1286I GDGCHC 2 cut(s) 526, 1302
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 5 cut(s) 69, 259, 267, 433, 563
BspACI CCGC 2 cut(s) 442, 981
BspFNI CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
BspPI GGATC 1 cut(s) 571
BspQI GCTCTTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 981
BsrDI GCAATG 3 cut(s) 233, 1088, 1280
BsrFI RCCGGY 1 cut(s) 216
BsrGI TGTACA 1 cut(s) 487
BsrI ACTGG 2 cut(s) 616, 993
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 5 cut(s) 69, 259, 267, 433, 563
Bst4CI ACNGT 3 cut(s) 508, 1025, 1394
Bst6I CTCTTC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 1324
BstDEI CTNAG 3 cut(s) 194, 1169, 1249
BstEII GGTNACC 1 cut(s) 331
BstF5I GGATG 2 cut(s) 691, 1390
BstFNI CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
BstHHI GCGC 7 cut(s) 28, 79, 93, 112, 144, 166, 1095
BstKTI GATC 5 cut(s) 72, 262, 270, 436, 566
BstMAI GTCTC 4 cut(s) 876, 1031, 1271, 1395
BstMBI GATC 5 cut(s) 69, 259, 267, 433, 563
BstNSI RCATGY 4 cut(s) 323, 388, 423, 1408
BstPI GGTNACC 1 cut(s) 331
BstSFI CTRYAG 3 cut(s) 389, 459, 1215
BstSLI GKGCMC 1 cut(s) 526
BstSNI TACGTA 1 cut(s) 1324
BstUI CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
BstV1I GCAGC 1 cut(s) 856
BsuI GTATCC 1 cut(s) 1313
BtsCI GGATG 2 cut(s) 691, 1390
BtsIMutI CAGTG 2 cut(s) 609, 1021
CfoI GCGC 7 cut(s) 28, 79, 93, 112, 144, 166, 1095
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 892
CseI GACGC 1 cut(s) 850
Csp6I GTAC 2 cut(s) 41, 488
CspAI ACCGGT 1 cut(s) 216
CviAII CATG 8 cut(s) 263, 320, 385, 420, 431, 491, 567, 1405
CviJI RGCY 8 cut(s) 59, 283, 357, 586, 615, 847, 922, 1158
CviKI_1 RGCY 8 cut(s) 59, 283, 357, 586, 615, 847, 922, 1158
CviQI GTAC 2 cut(s) 41, 488
DdeI CTNAG 3 cut(s) 194, 1169, 1249
DpnI GATC 5 cut(s) 71, 261, 269, 435, 565
DpnII GATC 5 cut(s) 69, 259, 267, 433, 563
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco105I TACGTA 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 1241
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 8 cut(s) 266, 323, 388, 423, 434, 494, 570, 1408
FalI AAGNNNNNCTT 6 cut(s) 47, 79, 170, 202, 215, 247
FaqI GGGAC 2 cut(s) 381, 674
FatI CATG 8 cut(s) 262, 319, 384, 419, 430, 490, 566, 1404
FauI CCCGC 1 cut(s) 435
FblI GTMKAC 1 cut(s) 1396
Fnu4HI GCNGC 2 cut(s) 845, 982
FokI GGATG 2 cut(s) 698, 1397
Fsp4HI GCNGC 2 cut(s) 845, 982
FspBI CTAG 2 cut(s) 674, 1053
GlaI GCGC 7 cut(s) 27, 78, 92, 111, 143, 165, 1094
GluI GCNGC 2 cut(s) 845, 982
GsaI CCCAGC 1 cut(s) 419
HapII CCGG 1 cut(s) 217
HgaI GACGC 1 cut(s) 850
HhaI GCGC 7 cut(s) 28, 79, 93, 112, 144, 166, 1095
Hin1II CATG 8 cut(s) 266, 323, 388, 423, 434, 494, 570, 1408
Hin6I GCGC 7 cut(s) 26, 77, 91, 110, 142, 164, 1093
HinP1I GCGC 7 cut(s) 26, 77, 91, 110, 142, 164, 1093
HincII GTYRAC 1 cut(s) 1397
HindII GTYRAC 1 cut(s) 1397
HinfI GANTC 5 cut(s) 369, 803, 1049, 1139, 1355
HpaII CCGG 1 cut(s) 217
HphI GGTGA 4 cut(s) 325, 636, 1058, 1240
Hpy166II GTNNAC 2 cut(s) 7, 1397
Hpy188I TCNGA 1 cut(s) 808
Hpy188III TCNNGA 7 cut(s) 67, 404, 674, 729, 911, 1053, 1241
Hpy8I GTNNAC 2 cut(s) 7, 1397
Hpy99I CGWCG 9 cut(s) 16, 33, 51, 84, 98, 101, 149, 164, 1401
HpyAV CCTTC 5 cut(s) 27, 299, 661, 803, 1361
HpyCH4III ACNGT 3 cut(s) 508, 1025, 1394
HpyCH4IV ACGT 6 cut(s) 99, 147, 719, 851, 1102, 1323
HpyCH4V TGCA 4 cut(s) 350, 430, 570, 784
HpyF3I CTNAG 3 cut(s) 194, 1169, 1249
HpySE526I ACGT 6 cut(s) 99, 147, 719, 851, 1102, 1323
Hsp92II CATG 8 cut(s) 266, 323, 388, 423, 434, 494, 570, 1408
HspAI GCGC 7 cut(s) 26, 77, 91, 110, 142, 164, 1093
Kzo9I GATC 5 cut(s) 69, 259, 267, 433, 563
LguI GCTCTTC 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 3 cut(s) 192, 417, 1375
MaeI CTAG 2 cut(s) 674, 1053
MaeII ACGT 6 cut(s) 99, 147, 719, 851, 1102, 1323
MaeIII GTNAC 3 cut(s) 331, 380, 852
MalI GATC 5 cut(s) 71, 261, 269, 435, 565
MbiI CCGCTC 1 cut(s) 981
MboI GATC 5 cut(s) 69, 259, 267, 433, 563
MfeI CAATTG 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 526, 1302
MlyI GAGTC 2 cut(s) 363, 1148
Mph1103I ATGCAT 1 cut(s) 432
MroXI GAANNNNTTC 2 cut(s) 938, 956
MseI TTAA 2 cut(s) 657, 1202
MspI CCGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 738
MvnI CGCG 7 cut(s) 28, 77, 79, 93, 110, 144, 164
NdeII GATC 5 cut(s) 69, 259, 267, 433, 563
NlaIII CATG 8 cut(s) 266, 323, 388, 423, 434, 494, 570, 1408
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 4 cut(s) 323, 388, 423, 1408
PaeR7I CTCGAG 1 cut(s) 1241
PciI ACATGT 1 cut(s) 1404
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 848
PdmI GAANNNNTTC 2 cut(s) 938, 956
PfeI GAWTC 3 cut(s) 803, 1049, 1355
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 2 cut(s) 846, 983
PleI GAGTC 2 cut(s) 363, 1147
PpsI GAGTC 2 cut(s) 363, 1147
Ppu21I YACGTR 1 cut(s) 1324
PpuMI RGGWCCY 1 cut(s) 892
PscI ACATGT 1 cut(s) 1404
Psp5II RGGWCCY 1 cut(s) 892
PspEI GGTNACC 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 892
PspPPI RGGWCCY 1 cut(s) 892
RsaI GTAC 2 cut(s) 42, 489
RsaNI GTAC 2 cut(s) 41, 488
SalI GTCGAC 1 cut(s) 1395
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 657, 1202
SatI GCNGC 2 cut(s) 845, 982
Sau3AI GATC 5 cut(s) 69, 259, 267, 433, 563
Sau96I GGNCC 1 cut(s) 892
SchI GAGTC 2 cut(s) 363, 1148
SduI GDGCHC 2 cut(s) 526, 1302
SfaNI GCATC 3 cut(s) 192, 417, 1375
SfcI CTRYAG 3 cut(s) 389, 459, 1215
Sfr274I CTCGAG 1 cut(s) 1241
SinI GGWCC 1 cut(s) 892
SlaI CTCGAG 1 cut(s) 1241
SmlI CTYRAG 2 cut(s) 1241, 1267
SmoI CTYRAG 2 cut(s) 1241, 1267
SnaBI TACGTA 1 cut(s) 1324
SsiI CCGC 2 cut(s) 442, 981
SspMI CTAG 2 cut(s) 674, 1053
TaaI ACNGT 3 cut(s) 508, 1025, 1394
TaiI ACGT 6 cut(s) 102, 150, 722, 854, 1105, 1326
TaqI TCGA 6 cut(s) 49, 403, 942, 960, 1242, 1396
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 3 cut(s) 803, 1049, 1355
Tru1I TTAA 2 cut(s) 657, 1202
Tru9I TTAA 2 cut(s) 657, 1202
TscAI CASTG 2 cut(s) 616, 1028
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 844
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 191, 788, 932
TspGWI ACGGA 2 cut(s) 97, 368
TspRI CASTG 2 cut(s) 616, 1028
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 4 cut(s) 934, 952, 1066, 1189
XbaI TCTAGA 2 cut(s) 673, 1052
XceI RCATGY 4 cut(s) 323, 388, 423, 1408
XhoI CTCGAG 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 1396
XmnI GAANNNNTTC 2 cut(s) 938, 956
XspI CTAG 2 cut(s) 674, 1053
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.