Prupe.2G107100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
16471414 .. 16472109
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G107100.1

Sequence Viewer

Length: 348 bp
ATGGGGAGCAGAGGGCCTTCACCCCTTGTTCCTTCTCTAATGGTAGGAGCATTGGGCTTGATCATCTGCAAACCTACCTTAGTATCCCTCTTGGAAATCTCAGTGTCTTTGTTCCAATTAGGGGCAGATACAGAGGGGAGAGCTACCTTTGCTTTTGTGATGCTTCTTCTTCTTTTAGTTTTGCTCGCTTTACAAGTTGTTTCTTATTTTTTTCCCGCATTTGGGATGTCTTCTCCGGTTACAGTTCATCAAACAAGTAGCTCTGACCAGGGTGGTGACGGGTTCGGGTTCGGTGTGGGGTCGTTTCTTCTACTTGTTCTCTTCCTTGTTCTGTATCATCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.11

Weight (kDa)

5.34

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022447)

Species Orthologous Gene IDs
prunus_persica Prupe.2G107100_v2.0.a1
pyrus_communis pycom02g20000
rosa_laevigata RLG00000029044
rosa_roxburghii Rroxscaffold_4G00311480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AfiI CCNNNNNNNGG 3 cut(s) 121, 221, 222
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 143, 261
AluI AGCT 2 cut(s) 143, 261
AoxI GGCC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 12, 287
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BbsI GAAGAC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 269
BciVI GTATCC 1 cut(s) 94
BclI TGATCA 1 cut(s) 60
BfuI GTATCC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 221, 222
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 121, 221, 222
BseMII CTCAG 1 cut(s) 114
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 121, 221, 222
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 79, 100
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 222
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 14
CviJI RGCY 4 cut(s) 16, 57, 143, 261
CviKI_1 RGCY 4 cut(s) 16, 57, 143, 261
DdeI CTNAG 2 cut(s) 79, 100
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 267
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 60
FokI GGATG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 236
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 12, 287
Hpy188I TCNGA 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 27, 42
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 79, 100
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 6, 47
LpnPI CCDG 4 cut(s) 249, 254, 281, 326
LweI GCATC 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 238, 275
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 5 cut(s) 158, 161, 222, 299, 313
MluCI AATT 1 cut(s) 116
MnlI CCTC 3 cut(s) 5, 98, 127
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 269
SetI ASST 5 cut(s) 76, 80, 145, 149, 263
SfaNI GCATC 1 cut(s) 150
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 244
TasI AATT 1 cut(s) 116
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.