RLG00000029044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0022447
Physical Location & Seq
Forward (+)
31939067 .. 31939417
351 bp
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UTR
Exon/CDS
Intron
RLM00000029044

Sequence Viewer

Length: 351 bp
ATGGCGAGTCGAGGGCCGTCACCATTGGTACCATCTCTAGTAGTAGGAGCTTTGGGATTGATCATCTTGAGACCTACCTTACTATCCCTTCTGGAAATCTCAGTGTCTTTGTTCCAAGTAGGGGCAGAAACAGATGGCAGGACCAACTTGGCTATTGTGATGCTTCTTCTGTTTTTGCTTTTACTAGTTGTACACACTGTTTCTTCTCTTTTCCCCACAATTGTTGGCATGTCATCCCCAGTTACAACTCTTCAATCAGGTAGCTCTGAATCTGCGGGCGATGGGTTTGAATTTGGAATAGGAACATTGCTTCTAATTGTACTCTTCCTTGTTCTGTATCATCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.15

Weight (kDa)

4.97

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022447)

Species Orthologous Gene IDs
prunus_persica Prupe.2G107100_v2.0.a1
pyrus_communis pycom02g20000
rosa_laevigata RLG00000029044
rosa_roxburghii Rroxscaffold_4G00311480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 3 cut(s) 30, 192, 321
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 254, 290
AhlI ACTAGT 1 cut(s) 184
AluBI AGCT 2 cut(s) 50, 264
AluI AGCT 2 cut(s) 50, 264
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 14, 141
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 28
BccI CCATC 3 cut(s) 40, 128, 275
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 2 cut(s) 38, 185
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 14, 141
BmiI GGNNCC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 305
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 239
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 255, 329
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 108, 195
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 14, 141
Csp6I GTAC 3 cut(s) 29, 191, 320
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 16, 50, 152, 264
CviKI_1 RGCY 4 cut(s) 16, 50, 152, 264
CviQI GTAC 3 cut(s) 29, 191, 320
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 255, 329
EarI CTCTTC 2 cut(s) 255, 329
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 141
FaeI CATG 1 cut(s) 232
FaiI YATR 1 cut(s) 230
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 60
FokI GGATG 1 cut(s) 220
FspBI CTAG 2 cut(s) 38, 185
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 1 cut(s) 232
HinfI GANTC 2 cut(s) 7, 269
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 67, 92
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 1 cut(s) 232
KpnI GGTACC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 77, 124, 243, 252
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 38, 185
MaeIII GTNAC 2 cut(s) 18, 241
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 158, 195, 242, 316
MfeI CAATTG 1 cut(s) 219
MluCI AATT 3 cut(s) 219, 290, 315
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 1 cut(s) 5
MunI CAATTG 1 cut(s) 219
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 1 cut(s) 269
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 14, 141
RsaI GTAC 3 cut(s) 30, 192, 321
RsaNI GTAC 3 cut(s) 29, 191, 320
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 14, 141
SchI GAGTC 1 cut(s) 16
SetI ASST 5 cut(s) 52, 76, 80, 262, 266
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 184
Sse9I AATT 3 cut(s) 219, 290, 315
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 38, 185
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 219, 290, 315
TatI WGTACW 2 cut(s) 190, 319
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 2 cut(s) 108, 202
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspRI CASTG 2 cut(s) 108, 202
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 38, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.