Rroxscaffold_4G00311480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0022447
Physical Location & Seq
Forward (+)
33999108 .. 33999950
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311480.1

Sequence Viewer

Length: 399 bp
ATGGCGAGTCGAGGGCCGTCACCATTGGTACCATCTCTAGTAGTAGGAGCTTTGGGATTGATCATCTTGAGACCTACCTTACTATCCCTTCTGGAAATCTCAGTGTCTTTGTTCCAAGTAGGGGCAGAAACAGATGGCAGGACCAACTTGGCTTTTGTGATGCTTCTTCTGTTTTTGCTTTTACTAGTTGCACACTTTGTTTCTTCTCTTTTCCCCACAATTGTTGGCATGTCATCCCCTGTTACAACTCTTCAATCAGGTAGCTCTGAATCTGGGGGTGATGGGATGGGGTTTCCTACTAACCCGAGGGTGGGCGTGCGTAGCAGTGCTCACCGAAGTGAGCTACAAATCAAGACCCCGACACCTCTCCTAGCATGGTTAGGCAACCAATCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.83

Weight (kDa)

8.53

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022447)

Species Orthologous Gene IDs
prunus_persica Prupe.2G107100_v2.0.a1
pyrus_communis pycom02g20000
rosa_laevigata RLG00000029044
rosa_roxburghii Rroxscaffold_4G00311480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 121, 310, 311
AgsI TTSAA 1 cut(s) 254
AhlI ACTAGT 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 336
AluBI AGCT 3 cut(s) 50, 264, 343
AluI AGCT 3 cut(s) 50, 264, 343
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 14, 141
AsuHPI GGTGA 3 cut(s) 12, 290, 323
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 331
BccI CCATC 4 cut(s) 40, 128, 275, 280
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 3 cut(s) 38, 185, 371
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 14, 141
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 310, 311
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 233, 291
BseLI CCNNNNNNNGG 3 cut(s) 121, 310, 311
BseMII CTCAG 1 cut(s) 114
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 3 cut(s) 121, 310, 311
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 60
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 233, 291
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 233, 291
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 108, 331
Cac8I GCNNGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 14, 141
Csp6I GTAC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 229, 375
CviJI RGCY 5 cut(s) 16, 50, 152, 264, 343
CviKI_1 RGCY 5 cut(s) 16, 50, 152, 264, 343
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 304
FaeI CATG 2 cut(s) 232, 378
FaiI YATR 2 cut(s) 230, 376
FatI CATG 2 cut(s) 228, 374
FbaI TGATCA 1 cut(s) 60
FokI GGATG 2 cut(s) 220, 298
FspBI CTAG 3 cut(s) 38, 185, 371
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 2 cut(s) 232, 378
HinfI GANTC 2 cut(s) 7, 269
HphI GGTGA 3 cut(s) 12, 290, 323
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 67, 92, 352
HpyAV CCTTC 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 2 cut(s) 232, 378
KpnI GGTACC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 77, 124, 243, 252, 258
LweI GCATC 1 cut(s) 150
MaeI CTAG 3 cut(s) 38, 185, 371
MaeIII GTNAC 2 cut(s) 18, 241
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 158, 195, 242
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 3 cut(s) 5, 300, 375
MseI TTAA 1 cut(s) 397
MslI CAYNNNNRTG 1 cut(s) 336
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 321
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 232, 378
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 336
PfeI GAWTC 1 cut(s) 269
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 14, 141
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 397
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 14, 141
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 331
SetI ASST 7 cut(s) 52, 76, 80, 262, 266, 345, 367
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 184
Sse9I AATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 38, 185, 371
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 2 cut(s) 108, 331
TseFI GTSAC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 18
TspRI CASTG 2 cut(s) 108, 331
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 1 cut(s) 232
XspI CTAG 3 cut(s) 38, 185, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.