Prupe.2G262900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017523
Physical Location & Seq
Reverse (-)
27127478 .. 27128050
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G262900.1

Sequence Viewer

Length: 360 bp
ATGGCACAAATGCTGTGCGTTTTGCTTATATTACTAGCTGTGTCAACTTGTTCATCTGCCAGGCTCTTGAATGACCAGCTTCATCACCTCGAGCTTCCTAAAGCACACAACAAACACAATGTGTTTTTACCAGAAAACCCATCACACGAAGAGGCTCCTCATCATCTCCGTCCTCAGCAGCATGTGTTTCCATGCCACACAGACAATACAGATCAAGCTTCTTCTTCTCATCTTCCTGCTGCTCCTAGATTTGGTGCTGCAGCAGCCGCCAAGTATGGGCCCCTTGTCTTGAATCTTCTTCCCAAAGGGACGAATCCACCTTCCGGACCCAGCAAAGGAACCAACGACCTCAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.83

Weight (kDa)

7.15

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05300
prunus_persica Prupe.2G262900_v2.0.a1
pyrus_communis pycom01g17930
rosa_chinensis RchiOBHm_Chr1g0372031
rosa_laevigata RLG00000026926
rosa_roxburghii Rroxscaffold_4G00285310
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1AG377800 Rh1BG341200 Rh1CG354400 Rh1DG372200
rosa_wichuraiana Rw1G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 323
AciI CCGC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 121
AfiI CCNNNNNNNGG 4 cut(s) 251, 276, 323, 335
AgsI TTSAA 2 cut(s) 70, 292
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 4 cut(s) 38, 79, 94, 218
AluI AGCT 4 cut(s) 38, 79, 94, 218
Ama87I CYCGRG 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 323
AoxI GGCC 1 cut(s) 278
ApaI GGGCCC 1 cut(s) 282
ApeKI GCWGC 5 cut(s) 178, 239, 257, 260, 263
AspS9I GGNCC 3 cut(s) 278, 279, 326
AsuHPI GGTGA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 5 cut(s) 190, 226, 244, 272, 275
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 61
BfaI CTAG 2 cut(s) 35, 246
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 6 cut(s) 179, 240, 258, 261, 264, 267
BlsI GCNGC 6 cut(s) 180, 241, 259, 262, 265, 268
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 3 cut(s) 278, 279, 326
BmiI GGNNCC 5 cut(s) 156, 280, 281, 328, 340
BmrFI CCNGG 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 276, 323, 335
BseAI TCCGGA 1 cut(s) 323
BseBI CCWGG 1 cut(s) 61
BseLI CCNNNNNNNGG 4 cut(s) 251, 276, 323, 335
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 5 cut(s) 190, 226, 244, 272, 275
BseYI CCCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 4 cut(s) 251, 276, 323, 335
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 89
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 323
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 323
BspLI GGNNCC 5 cut(s) 156, 280, 281, 328, 340
BspMAI CTGCAG 1 cut(s) 262
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 263, 266
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 5 cut(s) 190, 226, 244, 272, 275
BsuRI GGCC 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 278, 279, 326
CviAII CATG 2 cut(s) 182, 192
CviJI RGCY 8 cut(s) 38, 64, 79, 94, 155, 218, 266, 280
CviKI_1 RGCY 8 cut(s) 38, 64, 79, 94, 155, 218, 266, 280
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DraIII CACNNNGTG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 2 cut(s) 185, 195
FaiI YATR 4 cut(s) 29, 183, 193, 276
FaqI GGGAC 1 cut(s) 322
FatI CATG 2 cut(s) 181, 191
Fnu4HI GCNGC 6 cut(s) 179, 240, 258, 261, 264, 267
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 6 cut(s) 179, 240, 258, 261, 264, 267
FspBI CTAG 2 cut(s) 35, 246
GluI GCNGC 6 cut(s) 179, 240, 258, 261, 264, 267
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 324
Hin1II CATG 2 cut(s) 185, 195
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 2 cut(s) 292, 313
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 67, 289, 324
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 266
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 185, 195
Kpn2I TCCGGA 1 cut(s) 323
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 160, 247
LpnPI CCDG 7 cut(s) 46, 73, 89, 144, 249, 337, 343
Lsp1109I GCAGC 5 cut(s) 190, 226, 244, 272, 275
MaeI CTAG 2 cut(s) 35, 246
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 161, 213, 216, 224, 287, 290
MhlI GDGCHC 1 cut(s) 282
MnlI CCTC 5 cut(s) 98, 145, 168, 183, 359
MroI TCCGGA 1 cut(s) 323
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 263, 266
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 185, 195
NlaIV GGNNCC 5 cut(s) 156, 280, 281, 328, 340
NspI RCATGY 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 89
PfeI GAWTC 2 cut(s) 292, 313
PkrI GCNGC 6 cut(s) 180, 241, 259, 262, 265, 268
Psp6I CCWGG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 5 cut(s) 156, 280, 281, 328, 340
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 3 cut(s) 278, 279, 326
PspXI VCTCGAGB 1 cut(s) 89
PstI CTGCAG 1 cut(s) 262
SatI GCNGC 6 cut(s) 179, 240, 258, 261, 264, 267
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 3 cut(s) 278, 279, 326
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 282
SetI ASST 8 cut(s) 40, 81, 90, 96, 220, 322, 351, 359
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 35, 246
StyD4I CCNGG 1 cut(s) 59
TaqI TCGA 1 cut(s) 90
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 292, 313
TseI GCWGC 5 cut(s) 178, 239, 257, 260, 263
TspDTI ATGAA 2 cut(s) 42, 71
TspGWI ACGGA 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 326
XceI RCATGY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 35, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.