Rh1CG354400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017523
Physical Location & Seq
Reverse (-)
62982258 .. 62985503
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG354400.1

Sequence Viewer

Length: 309 bp
ATGGCAGCGCAGCTTCAAATCTTCTTATTCTTTTTCCTCGTAGTGTCCTCATCAGCATCTGCTAGGCTCTTGAACGTCGGCAACGTGTTGCAGAACCCACCTGTGTTGGTGTTACCGTGCCACACCGACGGCGAAGGCAACTCCAACCAGCAGACTGAAGTAATTAATGGAATTCGAACTTATCCGACTCCGAGATTTGATGCGGCGGCGAAGAACAGGAAGTACGTGCCGCTGGTTTTTAATATGCTTCCGAAAGGGCCGACGACGCCTTCTGGACCCAGCAAAGGAACCAACAGCATCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.0

Weight (kDa)

9.74

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05300
prunus_persica Prupe.2G262900_v2.0.a1
pyrus_communis pycom01g17930
rosa_chinensis RchiOBHm_Chr1g0372031
rosa_laevigata RLG00000026926
rosa_roxburghii Rroxscaffold_4G00285310
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1AG377800 Rh1BG341200 Rh1CG354400 Rh1DG372200
rosa_wichuraiana Rw1G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 203, 206, 230
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 2 cut(s) 17, 73
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 5, 10
ApoI RAATTY 1 cut(s) 171
AseI ATTAAT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 257, 275
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 17, 22
BceAI ACGGC 1 cut(s) 145
BfaI CTAG 1 cut(s) 63
BisI GCNGC 5 cut(s) 6, 11, 204, 207, 230
BlsI GCNGC 5 cut(s) 7, 12, 205, 208, 231
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 257, 275
BmiI GGNNCC 2 cut(s) 277, 289
BmsI GCATC 2 cut(s) 65, 190
Bpu14I TTCGAA 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 17, 22
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 175
BspACI CCGC 3 cut(s) 203, 206, 230
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 277, 289
BspT104I TTCGAA 1 cut(s) 175
BssNI GRCGYC 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 226
BstBI TTCGAA 1 cut(s) 175
BstHHI GCGC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 17, 22
BsuRI GGCC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 257, 275
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviJI RGCY 3 cut(s) 13, 67, 259
CviKI_1 RGCY 3 cut(s) 13, 67, 259
CviQI GTAC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 171
FaiI YATR 1 cut(s) 245
Fnu4HI GCNGC 5 cut(s) 6, 11, 204, 207, 230
Fsp4HI GCNGC 5 cut(s) 6, 11, 204, 207, 230
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 9
GluI GCNGC 5 cut(s) 6, 11, 204, 207, 230
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 259
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 266
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 186, 192, 252
Hpy188III TCNNGA 2 cut(s) 70, 273
Hpy99I CGWCG 4 cut(s) 80, 131, 265, 268
HpyAV CCTTC 2 cut(s) 128, 279
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 3 cut(s) 75, 84, 225
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpySE526I ACGT 3 cut(s) 75, 84, 225
Hsp92I GRCGYC 1 cut(s) 266
HspAI GCGC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 114, 161, 202, 218, 258, 292
Lsp1109I GCAGC 2 cut(s) 17, 22
LweI GCATC 2 cut(s) 65, 190
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 75, 84, 225
MaeIII GTNAC 1 cut(s) 111
MboII GAAGA 2 cut(s) 13, 223
MluCI AATT 2 cut(s) 162, 171
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 2 cut(s) 168, 209
MnlI CCTC 2 cut(s) 47, 58
MseI TTAA 2 cut(s) 165, 240
MspA1I CMGCKG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 277, 289
NspV TTCGAA 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 5 cut(s) 7, 12, 205, 208, 231
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 277, 289
PspPI GGNCC 2 cut(s) 257, 275
PsrI GAACNNNNNNTAC 2 cut(s) 206, 238
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 165, 240
SatI GCNGC 5 cut(s) 6, 11, 204, 207, 230
Sau96I GGNCC 2 cut(s) 257, 275
SchI GAGTC 1 cut(s) 181
SetI ASST 5 cut(s) 15, 78, 87, 103, 228
SfaNI GCATC 2 cut(s) 65, 190
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 1 cut(s) 275
Sse9I AATT 2 cut(s) 162, 171
SsiI CCGC 3 cut(s) 203, 206, 230
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 3 cut(s) 78, 87, 228
TaqI TCGA 1 cut(s) 175
TasI AATT 2 cut(s) 162, 171
TauI GCSGC 3 cut(s) 206, 209, 232
Tru1I TTAA 2 cut(s) 165, 240
Tru9I TTAA 2 cut(s) 165, 240
TseI GCWGC 2 cut(s) 5, 10
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 171
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.