Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Forward (+)

48373182 .. 48375827

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGGCTGGAATTGAAGGTCATGCAATCGGAATTGATCTCGGCACAAAGTACTCATGTGTGGGAGTTTGGAAGCATGATAACAATAATGTAGATATCATAGCGAACGATCAGGGCAACAGGACCACGCCGTCATGTGTTGCCTTCACTGATACTGAGTTTCTGGTAGGAGAAGCAGCGTCTTATCAGGTCATGAGAAACCCCGAAAACTCCGTCTTTGATGCAAAGCGGTTAATTGGCAGGAAATTCAGTGATACCTCTGTTCAAAATGACAAGAAGCTCTGGCCATTCAAGTTGGTTGAAGGTCCTGATGATAAGCCCATGATTTTGGTTACGCACGAAGGCAAAGAGAAACAGTGTGCTGCTGAAGAGATATCAAGTATGGTTCTTGCAAAAATGCGGGAGATTGCTGAAGCCTATCTTGGATCAACTGTGAAGAATGCAGTGATCACGGTCCCTGCTTACTTTAATAATTCACAGCGTGTGGCTACAAAAAGAGCTGGGATATCTGCAGGACTAAATGTGATGCGTATCATCAATGAACCAACTGCCGCAGCCATTGCTTACGGCCTTGACAAGAAGGCTGGTTGGTATAGCAAGAGAAATGTACTCATATTTGATTTGGGTGGGGGCACTTTGGATGTGTCACTACTTACAATAGGTGATGGTGTCTTTGAAGTGAAAGCCACTGCTGGAGATACTCATCTTGGAGGTGAGGACTTCGATACCAAAATGGTGAATTACTGTGTTGAGGAATTTAAGAGGAAGCACAATTTGGATGTCAGTGGAAACATCAGAACTCTTAGGAGGTTAAGAAATGCATGTGAAAAGGCAAAGAGGAGACTTTCATTTACAACTACAACTGACATTGAAATCGAATGTTTGCATCAGGGTATCGATTTCTATGTGACATTCACCCGTTCCAAATTTGAACAACTCAACATGGATTTCTTCACCAAATGTATGGAGCCTGTGCAAAAGTGTTTGGAGGATGCTAAAATGGACACGGACAGTGTGGATGATATTGTTCTTGCCGGTGGTTCTTCGAGAATTCCCAAGGTGCAACAACTATTACAGAATGTGTTCAAGGGAAAGGAACTGTGCAAGAGTATTCATCCTGATGAGGCTATTGCATATGGCGCAGCTGTTCAAGCTGCAGTCTTGAGTGGCCATGGAAATGGAAAGCTTCAAGACTTTACTCTGTTGGATGTCACCCCACTCTCACTCGGGGTGGACACTATAGCAGACCATTGCAACACATTCATGACAGTCGTCATCCCGAGGAACAGCCAAATTCCCATAAAAAAGAACACCACAAGTTTAACTACTAGCCGCCATAATCAAACTAAAGCCAAGCTCCCCATTTATGAGGGTGAGAGTGAAACACCCATAAATAATAACTTTCTGGGCCAGTTCATGCTTGATGGCATTCCTCCAGCTCCCGAGGGTGTTCCAAACTTCGATGTTTGTTTTGAGATAGATGCTAATGGTATCCTAAAGGTATCTGCTGAGGACAAGTCCACCGGCCAGAAGAAGGAGATTACAATCAGTGGTTGTGACAGAAAACAAGGAATCGAGACACTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

528

Amino Acids

57.97

Weight (kDa)

5.9

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	8 - 518	4.6e-203	Hsp70 protein
MreB_Mbl	PF06723	142 - 381	1.7e-16	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AciI	CCGC	4 cut(s)	226, 397, 549, 1330
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	3 cut(s)	281, 1165, 1522
AcsI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1290
AcuI	CTGAAG	2 cut(s)	384, 429
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	50, 606
AfiI	CCNNNNNNNGG	1 cut(s)	1531
AjuI	GAANNNNNNNTTGG	4 cut(s)	402, 434, 755, 787
AluBI	AGCT	7 cut(s)	277, 497, 1142, 1151, 1183, 1354, 1436
AluI	AGCT	7 cut(s)	277, 497, 1142, 1151, 1183, 1354, 1436
Alw26I	GTCTC	2 cut(s)	832, 1568
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	3 cut(s)	1223, 1276, 1439
AoxI	GGCC	5 cut(s)	281, 565, 1165, 1405, 1522
ApeKI	GCWGC	5 cut(s)	173, 359, 551, 1139, 1151
ApoI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1290
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	1079
AspLEI	GCGC	1 cut(s)	1139
AspS9I	GGNCC	4 cut(s)	120, 302, 451, 1405
AsuHPI	GGTGA	7 cut(s)	671, 722, 745, 904, 943, 1201, 1382
AvaI	CYCGRG	3 cut(s)	1223, 1276, 1439
AvaII	GGWCC	3 cut(s)	120, 302, 451
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BalI	TGGCCA	2 cut(s)	283, 1167
BbvCI	CCTCAGC	1 cut(s)	1506
BbvI	GCAGC	5 cut(s)	185, 346, 563, 1138, 1151
BccI	CCATC	2 cut(s)	656, 1415
BceAI	ACGGC	2 cut(s)	112, 580
BciVI	GTATCC	1 cut(s)	1499
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	832, 1568
BfaI	CTAG	1 cut(s)	1326
BfmI	CTRYAG	3 cut(s)	507, 1152, 1236
BfuI	GTATCC	1 cut(s)	1499
BisI	GCNGC	7 cut(s)	174, 360, 549, 552, 1140, 1152, 1330
BlsI	GCNGC	7 cut(s)	175, 361, 550, 553, 1141, 1153, 1331
BmcAI	AGTACT	1 cut(s)	50
Bme18I	GGWCC	3 cut(s)	120, 302, 451
BmeT110I	CYCGRG	3 cut(s)	1223, 1276, 1439
BmgT120I	GGNCC	4 cut(s)	120, 302, 451, 1405
BmiI	GGNNCC	2 cut(s)	453, 966
BmsI	GCATC	5 cut(s)	208, 513, 892, 979, 1468
BoxI	GACNNNNGTC	1 cut(s)	1268
BpmI	CTGGAG	2 cut(s)	711, 1416
Bpu10I	CCTNAGC	1 cut(s)	1506
BpuEI	CTTGAG	1 cut(s)	1180
Bsa29I	ATCGAT	1 cut(s)	894
BsaBI	GATNNNNATC	3 cut(s)	527, 699, 1541
BsaJI	CCNNGG	4 cut(s)	1053, 1168, 1277, 1440
Bsc4I	CCNNNNNNNGG	1 cut(s)	1531
Bse118I	RCCGGY	2 cut(s)	1031, 1520
Bse1I	ACTGG	2 cut(s)	1408, 1584
Bse3DI	GCAATG	2 cut(s)	555, 1246
Bse8I	GATNNNNATC	3 cut(s)	527, 699, 1541
BseCI	ATCGAT	1 cut(s)	894
BseDI	CCNNGG	4 cut(s)	1053, 1168, 1277, 1440
BseGI	GGATG	7 cut(s)	643, 781, 994, 1021, 1111, 1210, 1272
BseJI	GATNNNNATC	3 cut(s)	527, 699, 1541
BseLI	CCNNNNNNNGG	1 cut(s)	1531
BseMI	GCAATG	2 cut(s)	555, 1246
BseMII	CTCAG	2 cut(s)	144, 1497
BseNI	ACTGG	2 cut(s)	1408, 1584
BseRI	GAGGAG	1 cut(s)	850
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	5 cut(s)	185, 346, 563, 1138, 1151
BseYI	CCCAGC	1 cut(s)	497
BshFI	GGCC	5 cut(s)	283, 567, 1167, 1407, 1524
BshVI	ATCGAT	1 cut(s)	894
BsiHKCI	CYCGRG	3 cut(s)	1223, 1276, 1439
BsiSI	CCGG	2 cut(s)	1032, 1521
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	1531
BsmAI	GTCTC	2 cut(s)	832, 1568
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	2 cut(s)	442, 1425
BsnI	GGCC	5 cut(s)	283, 567, 1167, 1407, 1524
BsoBI	CYCGRG	3 cut(s)	1223, 1276, 1439
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	34, 106, 422, 444
Bsp19I	CCATGG	1 cut(s)	1168
BspACI	CCGC	4 cut(s)	226, 397, 549, 1330
BspANI	GGCC	5 cut(s)	283, 567, 1167, 1407, 1524
BspCNI	CTCAG	2 cut(s)	145, 1498
BspDI	ATCGAT	1 cut(s)	894
BspHI	TCATGA	2 cut(s)	189, 1260
BspLI	GGNNCC	2 cut(s)	453, 966
BspMAI	CTGCAG	2 cut(s)	511, 1156
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	555, 1246
BsrFI	RCCGGY	2 cut(s)	1031, 1520
BsrI	ACTGG	2 cut(s)	1408, 1584
BssAI	RCCGGY	2 cut(s)	1031, 1520
BssECI	CCNNGG	4 cut(s)	1053, 1168, 1277, 1440
BssMI	GATC	4 cut(s)	34, 106, 422, 444
BssT1I	CCWWGG	2 cut(s)	1053, 1168
Bst4CI	ACNGT	7 cut(s)	354, 430, 451, 743, 1010, 1098, 1267
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstDEI	CTNAG	3 cut(s)	153, 800, 1506
BstDSI	CCRYGG	1 cut(s)	1168
BstF5I	GGATG	7 cut(s)	643, 781, 994, 1021, 1111, 1210, 1272
BstHHI	GCGC	1 cut(s)	1139
BstKTI	GATC	4 cut(s)	37, 109, 425, 447
BstMAI	GTCTC	2 cut(s)	832, 1568
BstMBI	GATC	4 cut(s)	34, 106, 422, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 1136, 1148
BstNSI	RCATGY	1 cut(s)	822
BstPAI	GACNNNNGTC	1 cut(s)	1268
BstSFI	CTRYAG	3 cut(s)	507, 1152, 1236
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	5 cut(s)	185, 346, 563, 1138, 1151
BstXI	CCANNNNNNTGG	3 cut(s)	325, 961, 1175
Bsu15I	ATCGAT	1 cut(s)	894
BsuI	GTATCC	1 cut(s)	1499
BsuRI	GGCC	5 cut(s)	283, 567, 1167, 1407, 1524
BsuTUI	ATCGAT	1 cut(s)	894
BtgI	CCRYGG	1 cut(s)	1168
BtsCI	GGATG	7 cut(s)	643, 781, 994, 1021, 1111, 1210, 1272
BtsI	GCAGTG	2 cut(s)	447, 684
BtsIMutI	CAGTG	9 cut(s)	144, 253, 359, 447, 684, 787, 1015, 1552, 1577
CciI	TCATGA	2 cut(s)	189, 1260
CfoI	GCGC	1 cut(s)	1139
Cfr10I	RCCGGY	2 cut(s)	1031, 1520
Cfr13I	GGNCC	4 cut(s)	120, 302, 451, 1405
ClaI	ATCGAT	1 cut(s)	894
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	49, 605
CviQI	GTAC	2 cut(s)	49, 605
DdeI	CTNAG	3 cut(s)	153, 800, 1506
DpnI	GATC	4 cut(s)	36, 108, 424, 446
DpnII	GATC	4 cut(s)	34, 106, 422, 444
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	3 cut(s)	281, 1165, 1522
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	2 cut(s)	1053, 1168
Eco32I	GATATC	3 cut(s)	94, 372, 504
Eco47I	GGWCC	3 cut(s)	120, 302, 451
Eco57I	CTGAAG	2 cut(s)	384, 429
Eco88I	CYCGRG	3 cut(s)	1223, 1276, 1439
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1047
EcoRV	GATATC	3 cut(s)	94, 372, 504
EcoT14I	CCWWGG	2 cut(s)	1053, 1168
EcoT22I	ATGCAT	1 cut(s)	820
ErhI	CCWWGG	2 cut(s)	1053, 1168
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	437
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	1132
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	7 cut(s)	174, 360, 549, 552, 1140, 1152, 1330
FokI	GGATG	7 cut(s)	650, 788, 1001, 1028, 1098, 1217, 1259
Fsp4HI	GCNGC	7 cut(s)	174, 360, 549, 552, 1140, 1152, 1330
FspBI	CTAG	1 cut(s)	1326
GlaI	GCGC	1 cut(s)	1138
GluI	GCNGC	7 cut(s)	174, 360, 549, 552, 1140, 1152, 1330
GsaI	CCCAGC	1 cut(s)	501
GsuI	CTGGAG	2 cut(s)	711, 1416
HaeIII	GGCC	5 cut(s)	283, 567, 1167, 1407, 1524
HapII	CCGG	2 cut(s)	1032, 1521
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	1139
Hin6I	GCGC	1 cut(s)	1137
HinP1I	GCGC	1 cut(s)	1137
HindIII	AAGCTT	1 cut(s)	1181
HinfI	GANTC	1 cut(s)	1569
HpaII	CCGG	2 cut(s)	1032, 1521
HphI	GGTGA	7 cut(s)	671, 722, 745, 904, 943, 1201, 1382
Hpy166II	GTNNAC	2 cut(s)	1231, 1518
Hpy188I	TCNGA	2 cut(s)	29, 794
Hpy8I	GTNNAC	2 cut(s)	1231, 1518
HpyAV	CCTTC	6 cut(s)	8, 151, 293, 332, 571, 1525
HpyCH4III	ACNGT	7 cut(s)	354, 430, 451, 743, 1010, 1098, 1267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 1136, 1148
HpyF3I	CTNAG	3 cut(s)	153, 800, 1506
HspAI	GCGC	1 cut(s)	1137
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	4 cut(s)	34, 106, 422, 444
LmnI	GCTCC	3 cut(s)	964, 1359, 1441
Lsp1109I	GCAGC	5 cut(s)	185, 346, 563, 1138, 1151
LweI	GCATC	5 cut(s)	208, 513, 892, 979, 1468
MaeI	CTAG	1 cut(s)	1326
MaeIII	GTNAC	5 cut(s)	328, 642, 904, 1207, 1553
MalI	GATC	4 cut(s)	36, 108, 424, 446
MboI	GATC	4 cut(s)	34, 106, 422, 444
MboII	GAAGA	5 cut(s)	377, 445, 940, 1032, 1540
MhlI	GDGCHC	1 cut(s)	632
MlsI	TGGCCA	2 cut(s)	283, 1167
MluNI	TGGCCA	2 cut(s)	283, 1167
MmeI	TCCRAC	1 cut(s)	1182
Mox20I	TGGCCA	2 cut(s)	283, 1167
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	1079
MscI	TGGCCA	2 cut(s)	283, 1167
MseI	TTAA	5 cut(s)	230, 465, 756, 809, 1319
MslI	CAYNNNNRTG	3 cut(s)	1116, 1173, 1259
Msp20I	TGGCCA	2 cut(s)	283, 1167
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	2 cut(s)	1032, 1521
Mva1269I	GAATGC	2 cut(s)	442, 1425
MwoI	GCNNNNNNNGC	3 cut(s)	557, 1136, 1148
NcoI	CCATGG	1 cut(s)	1168
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	4 cut(s)	34, 106, 422, 444
NlaIV	GGNNCC	2 cut(s)	453, 966
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	4 cut(s)	642, 904, 1207, 1553
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	822
PagI	TCATGA	2 cut(s)	189, 1260
PctI	GAATGC	2 cut(s)	442, 1425
PdmI	GAANNNNTTC	1 cut(s)	1079
PfeI	GAWTC	1 cut(s)	1569
PkrI	GCNGC	7 cut(s)	175, 361, 550, 553, 1141, 1153, 1331
PpuMI	RGGWCCY	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	1268
Psp5II	RGGWCCY	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	453, 966
PspPI	GGNCC	4 cut(s)	120, 302, 451, 1405
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	2 cut(s)	511, 1156
PvuII	CAGCTG	1 cut(s)	1142
RsaI	GTAC	2 cut(s)	50, 606
RsaNI	GTAC	2 cut(s)	49, 605
RseI	CAYNNNNRTG	3 cut(s)	1116, 1173, 1259
SaqAI	TTAA	5 cut(s)	230, 465, 756, 809, 1319
SatI	GCNGC	7 cut(s)	174, 360, 549, 552, 1140, 1152, 1330
Sau3AI	GATC	4 cut(s)	34, 106, 422, 444
Sau96I	GGNCC	4 cut(s)	120, 302, 451, 1405
ScaI	AGTACT	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	5 cut(s)	208, 513, 892, 979, 1468
SfcI	CTRYAG	3 cut(s)	507, 1152, 1236
SinI	GGWCC	3 cut(s)	120, 302, 451
SmiMI	CAYNNNNRTG	3 cut(s)	1116, 1173, 1259
SmlI	CTYRAG	1 cut(s)	1159
SmoI	CTYRAG	1 cut(s)	1159
SsiI	CCGC	4 cut(s)	226, 397, 549, 1330
SspMI	CTAG	1 cut(s)	1326
StyI	CCWWGG	2 cut(s)	1053, 1168
TaaI	ACNGT	7 cut(s)	354, 430, 451, 743, 1010, 1098, 1267
TaqI	TCGA	6 cut(s)	720, 873, 894, 1043, 1458, 1572
TatI	WGTACW	2 cut(s)	48, 604
TauI	GCSGC	2 cut(s)	551, 1332
TfiI	GAWTC	1 cut(s)	1569
Tru1I	TTAA	5 cut(s)	230, 465, 756, 809, 1319
Tru9I	TTAA	5 cut(s)	230, 465, 756, 809, 1319
TscAI	CASTG	9 cut(s)	151, 253, 359, 447, 691, 787, 1015, 1552, 1584
TseFI	GTSAC	4 cut(s)	642, 904, 1207, 1553
TseI	GCWGC	5 cut(s)	173, 359, 551, 1139, 1151
Tsp45I	GTSAC	4 cut(s)	642, 904, 1207, 1553
TspDTI	ATGAA	5 cut(s)	552, 834, 1100, 1249, 1402
TspGWI	ACGGA	2 cut(s)	199, 1019
TspRI	CASTG	9 cut(s)	151, 253, 359, 447, 691, 787, 1015, 1552, 1584
VpaK11BI	GGWCC	3 cut(s)	120, 302, 451
XapI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1290
XceI	RCATGY	1 cut(s)	822
XmnI	GAANNNNTTC	1 cut(s)	1079
XspI	CTAG	1 cut(s)	1326
ZrmI	AGTACT	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.