Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Reverse (-)

48371324 .. 48372475

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0369000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTGACAAGTTATCGATCTGTCCTTGGTCTTTTTTGAATGTTGAGACGCCCTCGTTGCCTTGCTCGTATGCCTCCGCGGTTGCGAAGCCTGTGATTTCCCTTGCTAATCTGCCATCGCCTGTGATCCATGATGGTAAGACAACAATCACAATCTCAGAGGAAGGGTATAAATCCGGTTTGGACAAGTGCAAACACATGCTGTTGGCGCGCCTTCATCTTGCTTCAGGAGAAAAGCCTTATTCTTCGAATGATCTGCACAAGAAGTTGGGCTTGGTTTGGGGTGATATTGGGCACTGGAGTGTTATCCCAATGGGTAGAGGGTATTTCACCTTCATGTTTGCTTCTGATGCAGCGGCCTCGCTGGTATGGGCGCAGGGAGCAATATCTTTGAAGCCTGGCATCATACGCTTCATGAGATGGTCCCCAAACTTTTCCCCTGCCAATCAAAGACATACCAACGCCCAAGTGTGGGTGCGATTGTGGGATTTAGGGCTGCAATTCTGGGAGCCTGTCACTCTATTTGAGATTGCTAATGGTATTGGAGTCCCAGTCAAAATAGACCAGAATACTTTGGAGAGGAAATTTGGACTCTACGCTAGGGTTCTGGTGGATGTGGACTTGCAGAATGGGGAACTCATGGTGGTGGAGGTTGAATATGAGCGGCTGCCGGATTTTTGCTCTCACTGTGGCAACGTGGGACACCGGGTTACTGCTTGTAAACATGTTCAAAAGCCTGCTGCCCCTGCTCAGACAGAAGATAAGGAGGAGGAAAGGGGGCGTTCACGGAAGCCCCGACGTCGTCGTCATAAAGTTAATAAGGTATATGTTCGAAAGGAGGATAGAGGGAAGAAAGTGATAGTTGATTCTACACCAAGCGCTAAGGAGGATGCCAGAGAGGGACCTTCCTTTGTTCGGAAATCCCTTTCTCCTCATGCAATAGATAATGGTGTGGTTGGTGCTAGGGTGGAAAATTTTGATGTGGTTGAGCAAAGTGACTTGACTCATAAACTCTCGCAAGCGTACGAATCGTTGTCAAGTAAGGGAAGTATTAAAACCTTGATTATCGTACCTCGGGGATTAGGTGTTGGACCTAACCGAGGTAATTGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

371

Amino Acids

41.34

Weight (kDa)

9.39

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	62 - 148	3.3e-08	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	207 - 241	1.2e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	804
AatII	GACGTC	1 cut(s)	802
AccBSI	CCGCTC	1 cut(s)	664
AccII	CGCG	2 cut(s)	80, 211
AciI	CCGC	4 cut(s)	78, 80, 356, 664
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	584, 973
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	50, 799
AfaI	GTAC	2 cut(s)	1025, 1071
AfeI	AGCGCT	1 cut(s)	880
AfiI	CCNNNNNNNGG	4 cut(s)	471, 472, 915, 1100
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	40, 394, 656, 731
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AleI	CACNNNNGTG	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	1074
Aor51HI	AGCGCT	1 cut(s)	880
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	4 cut(s)	353, 496, 667, 740
ApoI	RAATTY	2 cut(s)	584, 973
AscI	GGCGCGCC	1 cut(s)	209
AspLEI	GCGC	5 cut(s)	211, 213, 376, 881, 1113
AspS9I	GGNCC	3 cut(s)	423, 902, 1091
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	296, 322
AsuII	TTCGAA	2 cut(s)	248, 832
AvaI	CYCGRG	1 cut(s)	1074
AvaII	GGWCC	3 cut(s)	423, 902, 1091
BaeGI	GKGCMC	1 cut(s)	297
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbvI	GCAGC	4 cut(s)	365, 483, 654, 727
BccI	CCATC	3 cut(s)	124, 128, 414
BcgI	CGANNNNNNTGC	4 cut(s)	238, 272, 342, 376
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	600, 963, 1114
BfoI	RGCGCY	2 cut(s)	882, 1114
BisI	GCNGC	6 cut(s)	354, 357, 497, 665, 668, 741
BlsI	GCNGC	6 cut(s)	355, 358, 498, 666, 669, 742
Bme1390I	CCNGG	2 cut(s)	399, 707
Bme18I	GGWCC	3 cut(s)	423, 902, 1091
BmeT110I	CYCGRG	1 cut(s)	1074
BmgT120I	GGNCC	3 cut(s)	423, 902, 1091
BmiI	GGNNCC	3 cut(s)	425, 510, 903
BmrFI	CCNGG	2 cut(s)	399, 707
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	3 cut(s)	340, 411, 880
BmuI	ACTGGG	1 cut(s)	545
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu14I	TTCGAA	2 cut(s)	248, 832
BpuMI	CCSGG	1 cut(s)	707
Bsa29I	ATCGAT	1 cut(s)	17
BsaHI	GRCGYC	2 cut(s)	50, 799
BsaJI	CCNNGG	4 cut(s)	26, 78, 1073, 1099
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	4 cut(s)	471, 472, 915, 1100
Bse1I	ACTGG	2 cut(s)	302, 551
BseBI	CCWGG	1 cut(s)	399
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	26, 78, 1073, 1099
BseGI	GGATG	2 cut(s)	619, 895
BseLI	CCNNNNNNNGG	4 cut(s)	471, 472, 915, 1100
BseMII	CTCAG	2 cut(s)	171, 764
BseNI	ACTGG	2 cut(s)	302, 551
BsePI	GCGCGC	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	782, 921
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	365, 483, 654, 727
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	80, 211
BshFI	GGCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	3 cut(s)	177, 671, 706
BsiWI	CGTACG	1 cut(s)	1023
BslFI	GGGAC	4 cut(s)	409, 533, 714, 915
BslI	CCNNNNNNNGG	4 cut(s)	471, 472, 915, 1100
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	4 cut(s)	409, 533, 714, 915
BsnI	GGCC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	1074
Bsp119I	TTCGAA	2 cut(s)	248, 832
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	18, 126, 253
BspACI	CCGC	4 cut(s)	78, 80, 356, 664
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	170, 763
BspDI	ATCGAT	1 cut(s)	17
BspFNI	CGCG	2 cut(s)	80, 211
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	425, 510, 903
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	2 cut(s)	248, 832
BsrBI	CCGCTC	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	302, 551
BssECI	CCNNGG	4 cut(s)	26, 78, 1073, 1099
BssHII	GCGCGC	1 cut(s)	209
BssMI	GATC	3 cut(s)	18, 126, 253
BssNI	GRCGYC	2 cut(s)	50, 799
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	689
BstACI	GRCGYC	2 cut(s)	50, 799
BstBI	TTCGAA	2 cut(s)	248, 832
BstC8I	GCNNGC	3 cut(s)	211, 738, 1020
BstDEI	CTNAG	3 cut(s)	157, 750, 882
BstDSI	CCRYGG	1 cut(s)	78
BstENI	CCTNNNNNAGG	1 cut(s)	1098
BstF5I	GGATG	2 cut(s)	619, 895
BstFNI	CGCG	2 cut(s)	80, 211
BstH2I	RGCGCY	2 cut(s)	882, 1114
BstHHI	GCGC	5 cut(s)	211, 213, 376, 881, 1113
BstKTI	GATC	3 cut(s)	21, 129, 256
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	3 cut(s)	18, 126, 253
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 208, 350, 380, 408, 746
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	2 cut(s)	202, 728
BstSCI	CCNGG	2 cut(s)	397, 705
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	2 cut(s)	80, 211
BstV1I	GCAGC	4 cut(s)	365, 483, 654, 727
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	359
BsuTUI	ATCGAT	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	619, 895
BtsIMutI	CAGTG	2 cut(s)	295, 685
Cac8I	GCNNGC	3 cut(s)	211, 738, 1020
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	5 cut(s)	211, 213, 376, 881, 1113
Cfr13I	GGNCC	3 cut(s)	423, 902, 1091
Cfr42I	CCGCGG	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	1024, 1070
CviAII	CATG	7 cut(s)	131, 199, 337, 415, 640, 725, 935
CviQI	GTAC	2 cut(s)	1024, 1070
DdeI	CTNAG	3 cut(s)	157, 750, 882
DpnI	GATC	3 cut(s)	20, 128, 255
DpnII	GATC	3 cut(s)	18, 126, 253
DrdI	GACNNNNNNGTC	1 cut(s)	804
DseDI	GACNNNNNNGTC	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	26
Eco47I	GGWCC	3 cut(s)	423, 902, 1091
Eco47III	AGCGCT	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	1074
EcoNI	CCTNNNNNAGG	1 cut(s)	1098
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	7 cut(s)	134, 202, 340, 418, 643, 728, 938
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	4 cut(s)	409, 533, 714, 915
FatI	CATG	7 cut(s)	130, 198, 336, 414, 639, 724, 934
Fnu4HI	GCNGC	6 cut(s)	354, 357, 497, 665, 668, 741
FokI	GGATG	2 cut(s)	626, 902
Fsp4HI	GCNGC	6 cut(s)	354, 357, 497, 665, 668, 741
FspBI	CTAG	3 cut(s)	600, 963, 1114
GlaI	GCGC	5 cut(s)	210, 212, 375, 880, 1112
GluI	GCNGC	6 cut(s)	354, 357, 497, 665, 668, 741
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	2 cut(s)	882, 1114
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	3 cut(s)	177, 671, 706
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	5 cut(s)	211, 213, 376, 881, 1113
Hin1I	GRCGYC	2 cut(s)	50, 799
Hin1II	CATG	7 cut(s)	134, 202, 340, 418, 643, 728, 938
Hin6I	GCGC	5 cut(s)	209, 211, 374, 879, 1111
HinP1I	GCGC	5 cut(s)	209, 211, 374, 879, 1111
HinfI	GANTC	5 cut(s)	546, 591, 866, 1003, 1028
HpaII	CCGG	3 cut(s)	177, 671, 706
HphI	GGTGA	2 cut(s)	296, 322
Hpy166II	GTNNAC	3 cut(s)	619, 722, 785
Hpy188I	TCNGA	4 cut(s)	160, 349, 753, 918
Hpy188III	TCNNGA	2 cut(s)	228, 415
Hpy8I	GTNNAC	3 cut(s)	619, 722, 785
Hpy99I	CGWCG	3 cut(s)	801, 804, 807
HpyAV	CCTTC	4 cut(s)	158, 224, 343, 915
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	2 cut(s)	696, 799
HpyCH4V	TGCA	6 cut(s)	192, 259, 353, 499, 625, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 208, 350, 380, 408, 746
HpyF3I	CTNAG	3 cut(s)	157, 750, 882
HpySE526I	ACGT	2 cut(s)	696, 799
Hsp92I	GRCGYC	2 cut(s)	50, 799
Hsp92II	CATG	7 cut(s)	134, 202, 340, 418, 643, 728, 938
HspAI	GCGC	5 cut(s)	209, 211, 374, 879, 1111
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	18, 126, 253
LmnI	GCTCC	2 cut(s)	380, 508
Lsp1109I	GCAGC	4 cut(s)	365, 483, 654, 727
LweI	GCATC	3 cut(s)	340, 411, 880
MaeI	CTAG	3 cut(s)	600, 963, 1114
MaeII	ACGT	2 cut(s)	696, 799
MaeIII	GTNAC	3 cut(s)	514, 709, 995
MalI	GATC	3 cut(s)	20, 128, 255
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	3 cut(s)	18, 126, 253
MboII	GAAGA	3 cut(s)	237, 770, 862
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	4 cut(s)	500, 584, 973, 1105
MlyI	GAGTC	3 cut(s)	555, 585, 997
MmeI	TCCRAC	1 cut(s)	1069
MseI	TTAA	2 cut(s)	816, 1053
MslI	CAYNNNNRTG	3 cut(s)	300, 335, 644
MspA1I	CMGCKG	2 cut(s)	80, 356
MspI	CCGG	3 cut(s)	177, 671, 706
MspR9I	CCNGG	2 cut(s)	399, 707
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	2 cut(s)	80, 211
MwoI	GCNNNNNNNGC	6 cut(s)	58, 208, 350, 380, 408, 746
NciI	CCSGG	1 cut(s)	707
NdeII	GATC	3 cut(s)	18, 126, 253
NlaIII	CATG	7 cut(s)	134, 202, 340, 418, 643, 728, 938
NlaIV	GGNNCC	3 cut(s)	425, 510, 903
NmuCI	GTSAC	2 cut(s)	514, 995
NspI	RCATGY	2 cut(s)	202, 728
NspV	TTCGAA	2 cut(s)	248, 832
OliI	CACNNNNGTG	1 cut(s)	300
PagI	TCATGA	1 cut(s)	414
PalAI	GGCGCGCC	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	209
PciI	ACATGT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	866, 1028
Pfl23II	CGTACG	1 cut(s)	1023
PflFI	GACNNNGTC	1 cut(s)	801
PkrI	GCNGC	6 cut(s)	355, 358, 498, 666, 669, 742
PleI	GAGTC	3 cut(s)	554, 585, 997
PpsI	GAGTC	3 cut(s)	554, 585, 997
PpuMI	RGGWCCY	1 cut(s)	902
PscI	ACATGT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspLI	CGTACG	1 cut(s)	1023
PspN4I	GGNNCC	3 cut(s)	425, 510, 903
PspPI	GGNCC	3 cut(s)	423, 902, 1091
PspPPI	RGGWCCY	1 cut(s)	902
PsyI	GACNNNGTC	1 cut(s)	801
PteI	GCGCGC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	1025, 1071
RsaNI	GTAC	2 cut(s)	1024, 1070
RseI	CAYNNNNRTG	3 cut(s)	300, 335, 644
SacII	CCGCGG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	816, 1053
SatI	GCNGC	6 cut(s)	354, 357, 497, 665, 668, 741
Sau3AI	GATC	3 cut(s)	18, 126, 253
Sau96I	GGNCC	3 cut(s)	423, 902, 1091
SchI	GAGTC	3 cut(s)	555, 585, 997
ScrFI	CCNGG	2 cut(s)	399, 707
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	3 cut(s)	340, 411, 880
Sfr303I	CCGCGG	1 cut(s)	81
SfuI	TTCGAA	2 cut(s)	248, 832
SgrBI	CCGCGG	1 cut(s)	81
SgsI	GGCGCGCC	1 cut(s)	209
SinI	GGWCC	3 cut(s)	423, 902, 1091
SmiMI	CAYNNNNRTG	3 cut(s)	300, 335, 644
Sse9I	AATT	4 cut(s)	500, 584, 973, 1105
SsiI	CCGC	4 cut(s)	78, 80, 356, 664
SspMI	CTAG	3 cut(s)	600, 963, 1114
StyD4I	CCNGG	2 cut(s)	397, 705
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	2 cut(s)	699, 802
TaqI	TCGA	3 cut(s)	17, 248, 832
TasI	AATT	4 cut(s)	500, 584, 973, 1105
TauI	GCSGC	2 cut(s)	359, 667
TfiI	GAWTC	2 cut(s)	866, 1028
Tru1I	TTAA	2 cut(s)	816, 1053
Tru9I	TTAA	2 cut(s)	816, 1053
TscAI	CASTG	2 cut(s)	302, 692
TseFI	GTSAC	2 cut(s)	514, 995
TseI	GCWGC	4 cut(s)	353, 496, 667, 740
Tsp45I	GTSAC	2 cut(s)	514, 995
TspDTI	ATGAA	3 cut(s)	206, 325, 403
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	2 cut(s)	302, 692
Tth111I	GACNNNGTC	1 cut(s)	801
VpaK11BI	GGWCC	3 cut(s)	423, 902, 1091
XagI	CCTNNNNNAGG	1 cut(s)	1098
XapI	RAATTY	2 cut(s)	584, 973
XceI	RCATGY	2 cut(s)	202, 728
XspI	CTAG	3 cut(s)	600, 963, 1114
ZraI	GACGTC	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.