Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Reverse (-)

60986730 .. 60991453

Gene Structure 4724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGAAGAGCAAGATCATCAGTTTCTCTGTGTTCACTCTGATTCTCTGTCTGTCAGCTCTGGCTATTGCAATTGCAGGCAGAGTAGCTGTGCCTCTGTTGCAATTCCAGGACAAACCCAGTTTCCTGAGACCAACTTTTAGTCGCATTTACGATACTTCAATGTATGGTGCTCTGCAACTCAATAATGGATTGGCTCAAACGCCTCAAATGGGGTGGAATAGCTGGAATTTCTTTGCTTGTGATATTAATGAAACCGTGATCAAGGAAACAGCTGATGCCCTCATCTCCACCGGATTAGCTGATTTAGGTTATGTGTATGTCAATATAGATGATTGCTGGTCTTTACCAACACGAAATTCTGAGGGTCAACTGGTCCCTGATCCTAAAACATTTCCATCGGGAATTAAAGCTCTTGCCGATTATATACATGGGAAGGGCCTCAAGCTTGGAATATATTCTGATGCCGGGGTTTTTACATGTCAAGTTCGACCAGGTTCAATTTATCATGAAAGTGATGACGCCAAGCTGTTTGCTTCTTGGGACTTAGATTACTTGAAGTATGACAACTGTTACAATCTGGGCATCCCACCAAAAGAACGGTACCCACCCATGCGTGAGGCCCTAAATACAACTGGACGCACAATTTTCTATTCAATTTGTGAATGGGGTGTTGATGATCCTGCTTTATGGGCTGGGAAAGTTGGGAATAGTTGGCGTACAACAGATGATATCAATGATACATGGGCAAGCATGACTACAATTGCTGATTTGAATGACAAGTGGGCATCATATGCTGGACCTGGTGGATGGAATGATCCAGATATGTTGGAAGTTGGCAATGGAGGCATGAGTTACCAGGAATACCGTGCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTAATTGGTTGTGATGTTAGAAACATGACTGCAGAAACATACGAAATTCTGAGCAATGAGGAGGTTATTGCTATAAACCAAGATTCTCTTGGGGTTCAAGGAAGGAAAGTGAATGTTTCAGGAACAGATGGGGTCTACCAGGTCCGTCCTCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

355

Amino Acids

39.33

Weight (kDa)

4.73

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	68 - 331	8e-81	Alpha galactosidase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	1044
AclWI	GGATC	3 cut(s)	377, 674, 812
AcsI	RAATTY	3 cut(s)	229, 358, 954
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	2 cut(s)	605, 721
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	6 cut(s)	162, 501, 559, 657, 775, 1007
AjnI	CCWGG	5 cut(s)	108, 493, 802, 858, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AluBI	AGCT	8 cut(s)	59, 89, 225, 275, 302, 413, 448, 529
AluI	AGCT	8 cut(s)	59, 89, 225, 275, 302, 413, 448, 529
Alw21I	GWGCWC	2 cut(s)	175, 874
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	377, 674, 812
AoxI	GGCC	3 cut(s)	439, 621, 900
ApoI	RAATTY	3 cut(s)	229, 358, 954
AseI	ATTAAT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	603
AspS9I	GGNCC	6 cut(s)	376, 439, 622, 800, 901, 1051
AsuC2I	CCSGG	1 cut(s)	469
AvaII	GGWCC	3 cut(s)	376, 800, 1051
BanI	GGYRCC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	175, 874
BccI	CCATC	3 cut(s)	406, 804, 1031
BciT130I	CCWGG	5 cut(s)	110, 495, 804, 860, 1049
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	939
Bme1390I	CCNGG	6 cut(s)	110, 469, 495, 804, 860, 1049
Bme18I	GGWCC	3 cut(s)	376, 800, 1051
BmgT120I	GGNCC	6 cut(s)	376, 439, 622, 800, 901, 1051
BmiI	GGNNCC	3 cut(s)	378, 605, 903
BmrFI	CCNGG	6 cut(s)	110, 469, 495, 804, 860, 1049
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	268, 454, 594, 797, 891
BmuI	ACTGGG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	120, 378, 640
Bse3DI	GCAATG	2 cut(s)	847, 970
BseBI	CCWGG	5 cut(s)	110, 495, 804, 860, 1049
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	585, 815
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	2 cut(s)	847, 970
BseMII	CTCAG	3 cut(s)	119, 354, 950
BseNI	ACTGG	3 cut(s)	120, 378, 640
BseRI	GAGGAG	2 cut(s)	983, 1050
BseYI	CCCAGC	1 cut(s)	695
BshFI	GGCC	3 cut(s)	441, 623, 902
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	2 cut(s)	175, 874
BsiSI	CCGG	2 cut(s)	294, 468
BslFI	GGGAC	2 cut(s)	362, 557
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	362, 557
BsnI	GGCC	3 cut(s)	441, 623, 902
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	175, 874
Bsp143I	GATC	5 cut(s)	15, 261, 382, 679, 817
BspANI	GGCC	3 cut(s)	441, 623, 902
BspCNI	CTCAG	3 cut(s)	120, 355, 951
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	3 cut(s)	378, 605, 903
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	3 cut(s)	377, 674, 812
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	2 cut(s)	847, 970
BsrI	ACTGG	3 cut(s)	120, 378, 640
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	15, 261, 382, 679, 817
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	5 cut(s)	110, 495, 804, 860, 1049
Bst4CI	ACNGT	4 cut(s)	259, 572, 603, 869
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	522
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	79, 751
BstDEI	CTNAG	4 cut(s)	128, 363, 547, 959
BstF5I	GGATG	2 cut(s)	585, 815
BstKTI	GATC	5 cut(s)	18, 264, 385, 682, 820
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	5 cut(s)	15, 261, 382, 679, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 692, 794, 846
BstNI	CCWGG	5 cut(s)	110, 495, 804, 860, 1049
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	6 cut(s)	108, 467, 493, 802, 858, 1047
BstSFI	CTRYAG	1 cut(s)	939
BsuRI	GGCC	3 cut(s)	441, 623, 902
BtsCI	GGATG	2 cut(s)	585, 815
Cac8I	GCNNGC	2 cut(s)	79, 751
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	6 cut(s)	376, 439, 622, 800, 901, 1051
CseI	GACGC	2 cut(s)	530, 648
CsiI	ACCWGGT	3 cut(s)	493, 802, 1047
Csp6I	GTAC	2 cut(s)	604, 720
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	8 cut(s)	431, 480, 509, 613, 744, 754, 850, 934
CviQI	GTAC	2 cut(s)	604, 720
DdeI	CTNAG	4 cut(s)	128, 363, 547, 959
DpnI	GATC	5 cut(s)	17, 263, 384, 681, 819
DpnII	GATC	5 cut(s)	15, 261, 382, 679, 817
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	3 cut(s)	376, 800, 1051
EcoO109I	RGGNCCY	3 cut(s)	439, 622, 901
EcoRII	CCWGG	5 cut(s)	108, 493, 802, 858, 1047
EcoRV	GATATC	1 cut(s)	733
FaeI	CATG	8 cut(s)	434, 483, 512, 616, 747, 757, 853, 937
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	362, 557
FatI	CATG	8 cut(s)	430, 479, 508, 612, 743, 753, 849, 933
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	1044
FokI	GGATG	2 cut(s)	572, 822
GsaI	CCCAGC	1 cut(s)	699
HaeIII	GGCC	3 cut(s)	441, 623, 902
HapII	CCGG	2 cut(s)	294, 468
HgaI	GACGC	2 cut(s)	530, 648
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	8 cut(s)	434, 483, 512, 616, 747, 757, 853, 937
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	43, 992
HpaII	CCGG	2 cut(s)	294, 468
Hpy166II	GTNNAC	3 cut(s)	36, 371, 1045
Hpy188I	TCNGA	4 cut(s)	42, 364, 463, 960
Hpy188III	TCNNGA	5 cut(s)	127, 402, 509, 821, 1029
Hpy8I	GTNNAC	3 cut(s)	36, 371, 1045
HpyAV	CCTTC	3 cut(s)	430, 892, 1005
HpyCH4III	ACNGT	4 cut(s)	259, 572, 603, 869
HpyCH4V	TGCA	5 cut(s)	71, 77, 103, 178, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 692, 794, 846
HpyF3I	CTNAG	4 cut(s)	128, 363, 547, 959
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	8 cut(s)	434, 483, 512, 616, 747, 757, 853, 937
KpnI	GGTACC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	15, 261, 382, 679, 817
LguI	GCTCTTC	1 cut(s)	2
LweI	GCATC	5 cut(s)	268, 454, 594, 797, 891
MabI	ACCWGGT	3 cut(s)	493, 802, 1047
MaeIII	GTNAC	2 cut(s)	572, 854
MalI	GATC	5 cut(s)	17, 263, 384, 681, 819
MboI	GATC	5 cut(s)	15, 261, 382, 679, 817
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	2 cut(s)	72, 762
MhlI	GDGCHC	2 cut(s)	175, 874
MmeI	TCCRAC	1 cut(s)	810
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	3 cut(s)	249, 408, 911
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	294, 468
MspR9I	CCNGG	6 cut(s)	110, 469, 495, 804, 860, 1049
MunI	CAATTG	2 cut(s)	72, 762
MvaI	CCWGG	5 cut(s)	110, 495, 804, 860, 1049
MwoI	GCNNNNNNNGC	4 cut(s)	100, 692, 794, 846
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	5 cut(s)	15, 261, 382, 679, 817
NlaIII	CATG	8 cut(s)	434, 483, 512, 616, 747, 757, 853, 937
NlaIV	GGNNCC	3 cut(s)	378, 605, 903
NspI	RCATGY	1 cut(s)	483
PagI	TCATGA	1 cut(s)	508
PciI	ACATGT	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	43, 992
PfoI	TCCNGGA	1 cut(s)	108
PscI	ACATGT	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	249
Psp6I	CCWGG	5 cut(s)	108, 493, 802, 858, 1047
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	5 cut(s)	108, 493, 802, 858, 1047
PspN4I	GGNNCC	3 cut(s)	378, 605, 903
PspPI	GGNCC	6 cut(s)	376, 439, 622, 800, 901, 1051
PstI	CTGCAG	1 cut(s)	943
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	605, 721
RsaNI	GTAC	2 cut(s)	604, 720
RseI	CAYNNNNRTG	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	3 cut(s)	249, 408, 911
Sau3AI	GATC	5 cut(s)	15, 261, 382, 679, 817
Sau96I	GGNCC	6 cut(s)	376, 439, 622, 800, 901, 1051
ScrFI	CCNGG	6 cut(s)	110, 469, 495, 804, 860, 1049
SduI	GDGCHC	2 cut(s)	175, 874
SexAI	ACCWGGT	3 cut(s)	493, 802, 1047
SfaNI	GCATC	5 cut(s)	268, 454, 594, 797, 891
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	3 cut(s)	376, 800, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
StyD4I	CCNGG	6 cut(s)	108, 467, 493, 802, 858, 1047
TaaI	ACNGT	4 cut(s)	259, 572, 603, 869
TaqI	TCGA	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	43, 992
Tru1I	TTAA	3 cut(s)	249, 408, 911
Tru9I	TTAA	3 cut(s)	249, 408, 911
TspDTI	ATGAA	3 cut(s)	267, 525, 911
TspGWI	ACGGA	1 cut(s)	1043
VpaK11BI	GGWCC	3 cut(s)	376, 800, 1051
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	3 cut(s)	229, 358, 954
XceI	RCATGY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	995
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.