Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Reverse (-)

17077195 .. 17081455

Gene Structure 4261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCGAAGAGGAAGATCACTCTCTCTCTCTACACTCTGATTCTCTCTCTATCGGTTGTCTCCTTGGCAGTTGCAGTCAGATTAACGCCTGTCCTGCAAACCCAGGAGAAGCCCAGTATTAAAAGACCAACATTTAATCGGATTTTTGATACTTCCAAGTATGGGATTTTGCAGCTCAACAACGGTTTGGCTCAAACGCCTCAGATGGGGTGGAATAGCTGGAATTTCTTTGCTTGCAATATTGATGAAACCGTTATCAAAGAAACCGCTGATGCGCTCATCTCAACTGGCTTAGCTGATTTAGGCTATGTGTATGTCAATATAGATGATTGCTGGTGTCCAACACGAAATTCTGAGGGTCAATTGGTCCCGGATCCTAAAGCATTTCCATCGGGAATTAAAGTGCTTGCTGATTATATACATGGAAAAGGACTCAAGCTTGGAATTTATTCTGACGCTGGGGCTTTTACATGTCAAGTTCGACCTGGATCACTTTATCATGAAAGTGATGATGCAAAGCTGTTTGCTTCTTGGGGCGTGGATTATTTGAAGTATGACAACTGTTATAACCTGGGGATCCCACCAAAAGAACGATACCCACCAATGCGTGAGGCCCTAAATGTGTCTGGACGCACAATTTTCTATTCGATTTGTGAATGGGGTGTTGACGACCCTGCTTTATGGGCTGGCAAGCTCGGAAATAGTTGGCGTACTACAGACGACATCAATGATAGTTGGGCGAGCATGACAGCAATTGCTGATTTGAATGACAAGTGGGCAGCATATGCAGGACCTGGTGGATGGAATGATCCCGATATGTTGGAAGTTGGCAATGGAGGCATGACTTACCAGGAGTACCGTTCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTGATTGGTTGCGATGTGAGAAACATGACTGCAGAAACATTTGAGATTCTAAGCAACGAGGAGGTTATTGCTGTAAACCAAGATCCACTTGGGGTTCAGGGAAGGAAGGTTAATGTTTCTGGACCAGATGGCTGCTATCAGGTTTGGGCAGGTCCTCTGTCAGGCCATCGATGGGCCGTTGTTCTCTGGAACCGTTGCTCGAAAGCAAATACTATAACAGCTACATGGGAAGCACTTGGACTCGAATCCGGCATTAGTGTCTCAGTGAGAGATTTGTGGCAGCACAAAGAAGTAGCGGTCGATGCAGTATCGTCATTTGGTGCTCAAGTTGATGCTCACGACTGCCTGATGTATATTTTTACTCCGCATACCGCCTCGCTCAGAAATATAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

432

Amino Acids

47.64

Weight (kDa)

5.25

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
Acc36I	ACCTGC	1 cut(s)	1040
AciI	CCGC	4 cut(s)	267, 1196, 1265, 1272
AclWI	GGATC	7 cut(s)	368, 381, 496, 571, 584, 803, 977
AcsI	RAATTY	3 cut(s)	223, 349, 444
AfaI	GTAC	2 cut(s)	712, 857
AfiI	CCNNNNNNNGG	4 cut(s)	162, 206, 1061, 1072
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	550, 766
AjnI	CCWGG	5 cut(s)	102, 484, 570, 793, 849
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	8 cut(s)	175, 219, 296, 439, 520, 694, 1121, 1292
AluI	AGCT	8 cut(s)	175, 219, 296, 439, 520, 694, 1121, 1292
Alw21I	GWGCWC	1 cut(s)	1225
Alw26I	GTCTC	2 cut(s)	64, 1165
AlwI	GGATC	7 cut(s)	368, 381, 496, 571, 584, 803, 977
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	4 cut(s)	612, 891, 1063, 1074
ApeKI	GCWGC	4 cut(s)	172, 779, 1032, 1180
ApoI	RAATTY	3 cut(s)	223, 349, 444
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	7 cut(s)	367, 613, 791, 892, 1022, 1052, 1074
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	4 cut(s)	367, 791, 1022, 1052
BamHI	GGATCC	2 cut(s)	373, 576
Bbv12I	GWGCWC	1 cut(s)	1225
BbvI	GCAGC	4 cut(s)	184, 791, 1019, 1192
BccI	CCATC	6 cut(s)	199, 397, 795, 1022, 1065, 1074
BceAI	ACGGC	1 cut(s)	1061
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	5 cut(s)	104, 486, 572, 795, 851
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	64, 1165
BfmI	CTRYAG	2 cut(s)	714, 930
BfuAI	ACCTGC	1 cut(s)	1040
BisI	GCNGC	4 cut(s)	173, 780, 1033, 1181
BlpI	GCTNAGC	1 cut(s)	292
BlsI	GCNGC	4 cut(s)	174, 781, 1034, 1182
Bme1390I	CCNGG	6 cut(s)	104, 371, 486, 572, 795, 851
Bme18I	GGWCC	4 cut(s)	367, 791, 1022, 1052
BmgT120I	GGNCC	7 cut(s)	367, 613, 791, 892, 1022, 1052, 1074
BmiI	GGNNCC	5 cut(s)	369, 375, 578, 894, 1091
BmrFI	CCNGG	6 cut(s)	104, 371, 486, 572, 795, 851
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	5 cut(s)	262, 502, 882, 1192, 1222
BmuI	ACTGGG	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	2 cut(s)	419, 1209
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	1069
BsaJI	CCNNGG	3 cut(s)	63, 102, 571
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 206, 1061, 1072
Bse1I	ACTGG	2 cut(s)	114, 292
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	5 cut(s)	104, 486, 572, 795, 851
BseCI	ATCGAT	1 cut(s)	1069
BseDI	CCNNGG	3 cut(s)	63, 102, 571
BseGI	GGATG	1 cut(s)	806
BseLI	CCNNNNNNNGG	4 cut(s)	162, 206, 1061, 1072
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	4 cut(s)	215, 345, 1176, 1294
BseNI	ACTGG	2 cut(s)	114, 292
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	4 cut(s)	184, 791, 1019, 1192
BseYI	CCCAGC	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	1200
BshFI	GGCC	4 cut(s)	614, 893, 1065, 1076
BshVI	ATCGAT	1 cut(s)	1069
BsiEI	CGRYCG	1 cut(s)	1200
BsiHKAI	GWGCWC	1 cut(s)	1225
BsiSI	CCGG	2 cut(s)	371, 1149
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	4 cut(s)	162, 206, 1061, 1072
BsmAI	GTCTC	2 cut(s)	64, 1165
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	4 cut(s)	614, 893, 1065, 1076
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp143I	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
Bsp1720I	GCTNAGC	1 cut(s)	292
BspACI	CCGC	4 cut(s)	267, 1196, 1265, 1272
BspANI	GGCC	4 cut(s)	614, 893, 1065, 1076
BspCNI	CTCAG	4 cut(s)	214, 346, 1175, 1293
BspDI	ATCGAT	1 cut(s)	1069
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	5 cut(s)	369, 375, 578, 894, 1091
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	1040
BspPI	GGATC	7 cut(s)	368, 381, 496, 571, 584, 803, 977
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	2 cut(s)	114, 292
BssECI	CCNNGG	3 cut(s)	63, 102, 571
BssMI	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	5 cut(s)	104, 486, 572, 795, 851
Bst4CI	ACNGT	5 cut(s)	185, 253, 563, 860, 1094
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	5 cut(s)	235, 408, 688, 692, 742
BstDEI	CTNAG	7 cut(s)	201, 292, 354, 950, 1162, 1280, 1293
BstENI	CCTNNNNNAGG	1 cut(s)	1059
BstF5I	GGATG	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	6 cut(s)	18, 376, 491, 579, 811, 985
BstMAI	GTCTC	2 cut(s)	64, 1165
BstMBI	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
BstMCI	CGRYCG	1 cut(s)	1200
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 683, 785, 837, 1202
BstNI	CCWGG	5 cut(s)	104, 486, 572, 795, 851
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	6 cut(s)	102, 369, 484, 570, 793, 849
BstSFI	CTRYAG	2 cut(s)	714, 930
BstV1I	GCAGC	4 cut(s)	184, 791, 1019, 1192
BstX2I	RGATCY	3 cut(s)	373, 576, 982
BstYI	RGATCY	3 cut(s)	373, 576, 982
Bsu15I	ATCGAT	1 cut(s)	1069
BsuRI	GGCC	4 cut(s)	614, 893, 1065, 1076
BsuTUI	ATCGAT	1 cut(s)	1069
BtgZI	GCGATG	1 cut(s)	927
BtsCI	GGATG	1 cut(s)	806
BtsIMutI	CAGTG	1 cut(s)	1170
BveI	ACCTGC	1 cut(s)	1040
Cac8I	GCNNGC	5 cut(s)	235, 408, 688, 692, 742
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	7 cut(s)	367, 613, 791, 892, 1022, 1052, 1074
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	2 cut(s)	464, 639
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	2 cut(s)	711, 856
CviAII	CATG	7 cut(s)	422, 471, 500, 745, 841, 925, 1125
CviQI	GTAC	2 cut(s)	711, 856
DdeI	CTNAG	7 cut(s)	201, 292, 354, 950, 1162, 1280, 1293
DpnI	GATC	6 cut(s)	17, 375, 490, 578, 810, 984
DpnII	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	4 cut(s)	367, 791, 1022, 1052
EcoNI	CCTNNNNNAGG	1 cut(s)	1059
EcoO109I	RGGNCCY	4 cut(s)	613, 791, 892, 1052
EcoRII	CCWGG	5 cut(s)	102, 484, 570, 793, 849
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	7 cut(s)	425, 474, 503, 748, 844, 928, 1128
FalI	AAGNNNNNCTT	2 cut(s)	972, 1004
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	7 cut(s)	421, 470, 499, 744, 840, 924, 1124
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	4 cut(s)	173, 780, 1033, 1181
FokI	GGATG	1 cut(s)	813
Fsp4HI	GCNGC	4 cut(s)	173, 780, 1033, 1181
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	4 cut(s)	173, 780, 1033, 1181
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	614, 893, 1065, 1076
HapII	CCGG	2 cut(s)	371, 1149
HgaI	GACGC	2 cut(s)	464, 639
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	7 cut(s)	425, 474, 503, 748, 844, 928, 1128
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	5 cut(s)	40, 432, 946, 1140, 1145
HpaII	CCGG	2 cut(s)	371, 1149
Hpy166II	GTNNAC	2 cut(s)	667, 976
Hpy188I	TCNGA	8 cut(s)	39, 80, 141, 204, 355, 454, 698, 1283
Hpy188III	TCNNGA	7 cut(s)	393, 500, 627, 812, 1020, 1087, 1238
Hpy8I	GTNNAC	2 cut(s)	667, 976
HpyAV	CCTTC	3 cut(s)	883, 996, 1000
HpyCH4III	ACNGT	5 cut(s)	185, 253, 563, 860, 1094
HpyCH4V	TGCA	8 cut(s)	74, 97, 172, 237, 515, 788, 932, 1205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 683, 785, 837, 1202
HpyF3I	CTNAG	7 cut(s)	201, 292, 354, 950, 1162, 1280, 1293
Hsp92II	CATG	7 cut(s)	425, 474, 503, 748, 844, 928, 1128
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
Lsp1109I	GCAGC	4 cut(s)	184, 791, 1019, 1192
LweI	GCATC	5 cut(s)	262, 502, 882, 1192, 1222
MabI	ACCWGGT	1 cut(s)	793
MalI	GATC	6 cut(s)	17, 375, 490, 578, 810, 984
MboI	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
MboII	GAAGA	2 cut(s)	19, 25
MfeI	CAATTG	2 cut(s)	362, 753
MflI	RGATCY	3 cut(s)	373, 576, 982
MhlI	GDGCHC	1 cut(s)	1225
MluCI	AATT	7 cut(s)	223, 349, 362, 396, 444, 636, 753
MlyI	GAGTC	2 cut(s)	426, 1134
MmeI	TCCRAC	2 cut(s)	365, 801
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	5 cut(s)	83, 120, 135, 399, 1011
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	371, 1149
MspR9I	CCNGG	6 cut(s)	104, 371, 486, 572, 795, 851
MunI	CAATTG	2 cut(s)	362, 753
MvaI	CCWGG	5 cut(s)	104, 486, 572, 795, 851
MwoI	GCNNNNNNNGC	5 cut(s)	94, 683, 785, 837, 1202
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
NlaIII	CATG	7 cut(s)	425, 474, 503, 748, 844, 928, 1128
NlaIV	GGNNCC	5 cut(s)	369, 375, 578, 894, 1091
NspI	RCATGY	1 cut(s)	474
PagI	TCATGA	1 cut(s)	499
PciI	ACATGT	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	40, 946, 1145
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	174, 781, 1034, 1182
PleI	GAGTC	2 cut(s)	426, 1134
PpsI	GAGTC	2 cut(s)	426, 1134
PpuMI	RGGWCCY	2 cut(s)	791, 1052
PscI	ACATGT	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	567
Psp5II	RGGWCCY	2 cut(s)	791, 1052
Psp6I	CCWGG	5 cut(s)	102, 484, 570, 793, 849
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	5 cut(s)	102, 484, 570, 793, 849
PspN4I	GGNNCC	5 cut(s)	369, 375, 578, 894, 1091
PspPI	GGNCC	7 cut(s)	367, 613, 791, 892, 1022, 1052, 1074
PspPPI	RGGWCCY	2 cut(s)	791, 1052
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	3 cut(s)	373, 576, 982
RsaI	GTAC	2 cut(s)	712, 857
RsaNI	GTAC	2 cut(s)	711, 856
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	5 cut(s)	83, 120, 135, 399, 1011
SatI	GCNGC	4 cut(s)	173, 780, 1033, 1181
Sau3AI	GATC	6 cut(s)	15, 373, 488, 576, 808, 982
Sau96I	GGNCC	7 cut(s)	367, 613, 791, 892, 1022, 1052, 1074
SchI	GAGTC	2 cut(s)	426, 1134
ScrFI	CCNGG	6 cut(s)	104, 371, 486, 572, 795, 851
SduI	GDGCHC	1 cut(s)	1225
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	5 cut(s)	262, 502, 882, 1192, 1222
SfcI	CTRYAG	2 cut(s)	714, 930
SinI	GGWCC	4 cut(s)	367, 791, 1022, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	434, 1224
SmoI	CTYRAG	2 cut(s)	434, 1224
Sse9I	AATT	7 cut(s)	223, 349, 362, 396, 444, 636, 753
SsiI	CCGC	4 cut(s)	267, 1196, 1265, 1272
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	6 cut(s)	102, 369, 484, 570, 793, 849
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	5 cut(s)	185, 253, 563, 860, 1094
TaqI	TCGA	6 cut(s)	481, 647, 1069, 1100, 1143, 1200
TasI	AATT	7 cut(s)	223, 349, 362, 396, 444, 636, 753
TfiI	GAWTC	3 cut(s)	40, 946, 1145
Tru1I	TTAA	5 cut(s)	83, 120, 135, 399, 1011
Tru9I	TTAA	5 cut(s)	83, 120, 135, 399, 1011
TscAI	CASTG	1 cut(s)	1170
TseI	GCWGC	4 cut(s)	172, 779, 1032, 1180
TspDTI	ATGAA	3 cut(s)	261, 516, 902
TspRI	CASTG	1 cut(s)	1170
VpaK11BI	GGWCC	4 cut(s)	367, 791, 1022, 1052
XagI	CCTNNNNNAGG	1 cut(s)	1059
XapI	RAATTY	3 cut(s)	223, 349, 444
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	986
XmnI	GAANNNNTTC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.