MD07G1232600.v1.1

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30645173 .. 30649536
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1232600.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGGCGAAGAGGAGGATCACTCTCTCTCTCTACACTCTGTTTCTCTCTCTGTCGGTGGTTTCCTTGGCAATTGCAGTCAGAGTAACGCCTCTCCTGCAAACCCAGGAGAAACCCAGTTTTCAAAGACCAACATTTAATCGCATTTTTGATACTTCCAAGTATGGCATTTTGCAGCTCAACAACGGCTTGGCTCAAACGCCTCAGATGGGGTGGAATAGCTGGAATTTCTTTGCTTGCAATATCAATGAAACCGTGATCAAGGAAACCGCTGATGCGCTCATCTCAACTGGCCTAGCAGAATTAGGTTATGTGTATGTCAATATAGATGATTGCTGGTCTTCTCCAACACGAAATTCTGAGGGTCAATTGGTCCCTGAACCTAAAACATTTCCATCGGGAATTAAAGCTCTTGCTGATTATATACATGGAAAAGGACTCAAGCTTGGAATTTATTCTGATGCTGGGGTTTTTACATGTCAAGTTCGACCAGGATCACTTTATCATGAAAGTGCGGATGCAAAGCTATTTGCTTCTTGGGATGTGGATTATTTGAAGTATGACAACTGTTATAACCTGGGGATCCCACCAAAAGAACGATACCCACCAATGCGTGAGGCCCTAAATGCATCTGGGCGCACAATTTTCTATTCGCTTTGTGAATGGGGTGTTGACGACCCTGCTTTGTGGGCTGGAAAGGTTGGAAATAGTTGGCGTACTACAGATGACATTAATGATACTTGGGCGAGCATGACAACAATTGCTGATTTGAATGACAAGTGGGCAGCGTATGCAGGACCTGGTGGATGGAATGATCCGGATATGTTGGAAGTTGGCAATGGAGGCATGACTTACAAGGAGTACCGTGCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTGATTGGTTGTGATGTAAGAAACATGACTGCAGAAACATTTGAGATTCTAAGCAATGCGGAGATTATTGCTGTAAACCAAGATCCACTTGGGGTTCAGGGAAGGAAAGTTTATGTTTCTGGAACAGATGGTTGCTATCAGGTTTGGGCAGGTCCTCTATCAGGAGATCGGTTGACTGTTGCTCTCTGGAATCGGTGCTCGAAATCAGAGACTATAACAGCTACTTGGGAAGTACTTGGACTTGAATCCGGCATCAGTGTCTCAGTGAGAGATTTGTGGCAGCACAAAGAGGTAGCGGTAGACGCGGTGTCGTCATTTGGTGCTCAGGTCGATGCTCACGACTGCCGGATGTACATTTTTACTCCTCGGACCGGCTCGCTCAGATATGTAGCTTAG

Protein Analysis

433

Amino Acids

47.94

Weight (kDa)

5.29

Isoelectric Point (pI)

22.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 66 - 329 1.9e-80 Alpha galactosidase A
Melibiase_C PF17801 344 - 420 2.6e-19 Alpha galactosidase C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 1043
AccI GTMKAC 1 cut(s) 1203
AccII CGCG 1 cut(s) 1208
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 5 cut(s) 267, 512, 962, 1199, 1208
AclWI GGATC 6 cut(s) 23, 499, 574, 587, 806, 980
AcsI RAATTY 3 cut(s) 223, 352, 447
AfaI GTAC 4 cut(s) 715, 860, 1137, 1256
AfiI CCNNNNNNNGG 3 cut(s) 206, 1064, 1274
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 4 cut(s) 122, 553, 769, 1148
AhdI GACNNNNNGTC 1 cut(s) 1210
AjnI CCWGG 4 cut(s) 102, 487, 573, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 7 cut(s) 175, 219, 407, 442, 523, 1124, 1295
AluI AGCT 7 cut(s) 175, 219, 407, 442, 523, 1124, 1295
Alw21I GWGCWC 3 cut(s) 868, 1103, 1228
Alw26I GTCTC 2 cut(s) 1106, 1168
AlwI GGATC 6 cut(s) 23, 499, 574, 587, 806, 980
AlwNI CAGNNNCTG 1 cut(s) 797
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 3 cut(s) 289, 615, 894
ApeKI GCWGC 3 cut(s) 172, 782, 1183
ApoI RAATTY 3 cut(s) 223, 352, 447
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 451
AspLEI GCGC 2 cut(s) 277, 636
AspS9I GGNCC 6 cut(s) 370, 616, 794, 895, 1055, 1272
AvaII GGWCC 4 cut(s) 370, 794, 1055, 1272
BamHI GGATCC 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 3 cut(s) 868, 1103, 1228
BbvI GCAGC 3 cut(s) 184, 794, 1195
BccI CCATC 4 cut(s) 199, 400, 798, 1025
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 4 cut(s) 104, 489, 575, 798
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 1106, 1168
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 717, 933
BfuAI ACCTGC 1 cut(s) 1043
BisI GCNGC 3 cut(s) 173, 783, 1184
BlsI GCNGC 3 cut(s) 174, 784, 1185
BmcAI AGTACT 1 cut(s) 1137
Bme1390I CCNGG 4 cut(s) 104, 489, 575, 798
Bme18I GGWCC 4 cut(s) 370, 794, 1055, 1272
BmeRI GACNNNNNGTC 1 cut(s) 1210
BmgT120I GGNCC 6 cut(s) 370, 616, 794, 895, 1055, 1272
BmiI GGNNCC 3 cut(s) 372, 581, 897
BmrFI CCNGG 4 cut(s) 104, 489, 575, 798
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 7 cut(s) 262, 448, 505, 635, 885, 1164, 1225
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 1227
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 63, 102, 574, 1268
BsaWI WCCGGW 1 cut(s) 814
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 1064, 1274
Bse118I RCCGGY 1 cut(s) 1274
Bse1I ACTGG 2 cut(s) 114, 292
Bse3DI GCAATG 2 cut(s) 841, 964
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 4 cut(s) 104, 489, 575, 798
BseDI CCNNGG 4 cut(s) 63, 102, 574, 1268
BseGI GGATG 4 cut(s) 520, 544, 809, 1257
BseLI CCNNNNNNNGG 3 cut(s) 206, 1064, 1274
BseMI GCAATG 2 cut(s) 841, 964
BseMII CTCAG 5 cut(s) 215, 348, 1179, 1241, 1297
BseNI ACTGG 2 cut(s) 114, 292
BseRI GAGGAG 2 cut(s) 25, 1257
BseXI GCAGC 3 cut(s) 184, 794, 1195
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 1208
BshFI GGCC 3 cut(s) 291, 617, 896
BsiHKAI GWGCWC 3 cut(s) 868, 1103, 1228
BsiSI CCGG 4 cut(s) 815, 1152, 1249, 1275
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 206, 1064, 1274
BsmAI GTCTC 2 cut(s) 1106, 1168
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 291, 617, 896
Bsp1286I GDGCHC 3 cut(s) 868, 1103, 1228
Bsp13I TCCGGA 1 cut(s) 814
Bsp1407I TGTACA 1 cut(s) 1254
Bsp143I GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
BspACI CCGC 5 cut(s) 267, 512, 962, 1199, 1208
BspANI GGCC 3 cut(s) 291, 617, 896
BspCNI CTCAG 5 cut(s) 214, 349, 1178, 1240, 1296
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 1 cut(s) 1208
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 3 cut(s) 372, 581, 897
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 1 cut(s) 1043
BspPI GGATC 6 cut(s) 23, 499, 574, 587, 806, 980
BsrDI GCAATG 2 cut(s) 841, 964
BsrFI RCCGGY 1 cut(s) 1274
BsrGI TGTACA 1 cut(s) 1254
BsrI ACTGG 2 cut(s) 114, 292
BssAI RCCGGY 1 cut(s) 1274
BssECI CCNNGG 4 cut(s) 63, 102, 574, 1268
BssMI GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 4 cut(s) 104, 489, 575, 798
Bst4CI ACNGT 4 cut(s) 253, 566, 863, 1081
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 1 cut(s) 788
BstAUI TGTACA 1 cut(s) 1254
BstC8I GCNNGC 3 cut(s) 235, 745, 1280
BstDEI CTNAG 7 cut(s) 201, 357, 953, 1165, 1227, 1283, 1296
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 4 cut(s) 520, 544, 809, 1257
BstFNI CGCG 1 cut(s) 1208
BstHHI GCGC 2 cut(s) 277, 636
BstKTI GATC 7 cut(s) 18, 258, 494, 582, 814, 988, 1072
BstMAI GTCTC 2 cut(s) 1106, 1168
BstMBI GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
BstMWI GCNNNNNNNGC 6 cut(s) 94, 623, 686, 788, 840, 1205
BstNI CCWGG 4 cut(s) 104, 489, 575, 798
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 4 cut(s) 102, 487, 573, 796
BstSFI CTRYAG 2 cut(s) 717, 933
BstUI CGCG 1 cut(s) 1208
BstV1I GCAGC 3 cut(s) 184, 794, 1195
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 579, 985
BstYI RGATCY 2 cut(s) 579, 985
BsuRI GGCC 3 cut(s) 291, 617, 896
BtsCI GGATG 4 cut(s) 520, 544, 809, 1257
BtsIMutI CAGTG 2 cut(s) 1165, 1173
BveI ACCTGC 1 cut(s) 1043
Cac8I GCNNGC 3 cut(s) 235, 745, 1280
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 502
CfoI GCGC 2 cut(s) 277, 636
Cfr10I RCCGGY 1 cut(s) 1274
Cfr13I GGNCC 6 cut(s) 370, 616, 794, 895, 1055, 1272
CpoI CGGWCCG 1 cut(s) 1272
CseI GACGC 1 cut(s) 1214
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 4 cut(s) 714, 859, 1136, 1255
CspI CGGWCCG 1 cut(s) 1272
CviAII CATG 6 cut(s) 425, 474, 503, 748, 844, 928
CviQI GTAC 4 cut(s) 714, 859, 1136, 1255
DdeI CTNAG 7 cut(s) 201, 357, 953, 1165, 1227, 1283, 1296
DpnI GATC 7 cut(s) 17, 257, 493, 581, 813, 987, 1071
DpnII GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
DriI GACNNNNNGTC 1 cut(s) 1210
Eam1104I CTCTTC 1 cut(s) 2
Eam1105I GACNNNNNGTC 1 cut(s) 1210
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 4 cut(s) 370, 794, 1055, 1272
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 4 cut(s) 616, 794, 895, 1055
EcoRII CCWGG 4 cut(s) 102, 487, 573, 796
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 6 cut(s) 428, 477, 506, 751, 847, 931
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 1 cut(s) 356
FatI CATG 6 cut(s) 424, 473, 502, 747, 843, 927
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 1 cut(s) 1203
Fnu4HI GCNGC 3 cut(s) 173, 783, 1184
FokI GGATG 4 cut(s) 527, 551, 816, 1264
Fsp4HI GCNGC 3 cut(s) 173, 783, 1184
FspBI CTAG 1 cut(s) 293
GlaI GCGC 2 cut(s) 276, 635
GluI GCNGC 3 cut(s) 173, 783, 1184
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 291, 617, 896
HapII CCGG 4 cut(s) 815, 1152, 1249, 1275
HgaI GACGC 1 cut(s) 1214
HhaI GCGC 2 cut(s) 277, 636
Hin1II CATG 6 cut(s) 428, 477, 506, 751, 847, 931
Hin6I GCGC 2 cut(s) 275, 634
HinP1I GCGC 2 cut(s) 275, 634
HincII GTYRAC 2 cut(s) 670, 1077
HindII GTYRAC 2 cut(s) 670, 1077
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 4 cut(s) 435, 949, 1093, 1148
HpaII CCGG 4 cut(s) 815, 1152, 1249, 1275
Hpy166II GTNNAC 4 cut(s) 670, 979, 1077, 1204
Hpy188I TCNGA 7 cut(s) 80, 204, 358, 457, 1111, 1272, 1286
Hpy188III TCNNGA 7 cut(s) 396, 503, 815, 1023, 1065, 1090, 1241
Hpy8I GTNNAC 4 cut(s) 670, 979, 1077, 1204
HpyAV CCTTC 2 cut(s) 886, 999
HpyCH4III ACNGT 4 cut(s) 253, 566, 863, 1081
HpyCH4V TGCA 8 cut(s) 74, 97, 172, 237, 518, 626, 791, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 623, 686, 788, 840, 1205
HpyF3I CTNAG 7 cut(s) 201, 357, 953, 1165, 1227, 1283, 1296
Hsp92II CATG 6 cut(s) 428, 477, 506, 751, 847, 931
HspAI GCGC 2 cut(s) 275, 634
Kpn2I TCCGGA 1 cut(s) 814
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
Lsp1109I GCAGC 3 cut(s) 184, 794, 1195
LweI GCATC 7 cut(s) 262, 448, 505, 635, 885, 1164, 1225
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 82
MalI GATC 7 cut(s) 17, 257, 493, 581, 813, 987, 1071
MboI GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
MboII GAAGA 2 cut(s) 19, 330
MfeI CAATTG 3 cut(s) 69, 365, 756
MflI RGATCY 2 cut(s) 579, 985
MhlI GDGCHC 3 cut(s) 868, 1103, 1228
MluCI AATT 9 cut(s) 69, 223, 299, 352, 365, 399, 447, 639, 756
MlyI GAGTC 1 cut(s) 429
MmeI TCCRAC 3 cut(s) 368, 679, 804
Mph1103I ATGCAT 1 cut(s) 628
MroI TCCGGA 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 3 cut(s) 135, 402, 729
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 4 cut(s) 815, 1152, 1249, 1275
MspR9I CCNGG 4 cut(s) 104, 489, 575, 798
MunI CAATTG 3 cut(s) 69, 365, 756
MvaI CCWGG 4 cut(s) 104, 489, 575, 798
MvnI CGCG 1 cut(s) 1208
MwoI GCNNNNNNNGC 6 cut(s) 94, 623, 686, 788, 840, 1205
NdeII GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
NlaIII CATG 6 cut(s) 428, 477, 506, 751, 847, 931
NlaIV GGNNCC 3 cut(s) 372, 581, 897
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 1 cut(s) 477
PagI TCATGA 1 cut(s) 502
PciI ACATGT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 1239
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 949, 1093, 1148
PkrI GCNGC 3 cut(s) 174, 784, 1185
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PpuMI RGGWCCY 2 cut(s) 794, 1055
PscI ACATGT 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 570
Psp5II RGGWCCY 2 cut(s) 794, 1055
Psp6I CCWGG 4 cut(s) 102, 487, 573, 796
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 4 cut(s) 102, 487, 573, 796
PspN4I GGNNCC 3 cut(s) 372, 581, 897
PspPI GGNCC 6 cut(s) 370, 616, 794, 895, 1055, 1272
PspPPI RGGWCCY 2 cut(s) 794, 1055
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 2 cut(s) 579, 985
RsaI GTAC 4 cut(s) 715, 860, 1137, 1256
RsaNI GTAC 4 cut(s) 714, 859, 1136, 1255
RseI CAYNNNNRTG 1 cut(s) 507
Rsr2I CGGWCCG 1 cut(s) 1272
RsrII CGGWCCG 1 cut(s) 1272
SaqAI TTAA 3 cut(s) 135, 402, 729
SatI GCNGC 3 cut(s) 173, 783, 1184
Sau3AI GATC 7 cut(s) 15, 255, 491, 579, 811, 985, 1069
Sau96I GGNCC 6 cut(s) 370, 616, 794, 895, 1055, 1272
ScaI AGTACT 1 cut(s) 1137
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 4 cut(s) 104, 489, 575, 798
SduI GDGCHC 3 cut(s) 868, 1103, 1228
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 7 cut(s) 262, 448, 505, 635, 885, 1164, 1225
SfcI CTRYAG 2 cut(s) 717, 933
SinI GGWCC 4 cut(s) 370, 794, 1055, 1272
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 9 cut(s) 69, 223, 299, 352, 365, 399, 447, 639, 756
SsiI CCGC 5 cut(s) 267, 512, 962, 1199, 1208
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 4 cut(s) 102, 487, 573, 796
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 253, 566, 863, 1081
TaqI TCGA 3 cut(s) 484, 1103, 1233
TasI AATT 9 cut(s) 69, 223, 299, 352, 365, 399, 447, 639, 756
TatI WGTACW 2 cut(s) 1135, 1254
TfiI GAWTC 3 cut(s) 949, 1093, 1148
Tru1I TTAA 3 cut(s) 135, 402, 729
Tru9I TTAA 3 cut(s) 135, 402, 729
TscAI CASTG 2 cut(s) 1165, 1173
TseI GCWGC 3 cut(s) 172, 782, 1183
TspDTI ATGAA 3 cut(s) 261, 519, 905
TspRI CASTG 2 cut(s) 1165, 1173
VpaK11BI GGWCC 4 cut(s) 370, 794, 1055, 1272
VspI ATTAAT 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 3 cut(s) 223, 352, 447
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 1203
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 1137
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.