Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Forward (+)

48335330 .. 48335622

Gene Structure 293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0368400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGATAAGAGTTATGATCCGGTTTATGGTGCTAGACCAATCAGGAGATGGCTTGAGAAGAAGGTGGTGACGGAGTTATCAAGAATGCTGGTTAAAGAAGAGATGAGGGAGAACTCAGCAGTATACATAGATGCAAGAGTGAGTGGAAGTGAGTTGGTGTGTATGGTTGAGAAGAATGGAAGCAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

63

Amino Acids

7.24

Weight (kDa)

7.76

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	2 - 42	6.9e-11	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	26
AlwI	GGATC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	79
BccI	CCATC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	11
BssMI	GATC	1 cut(s)	16
BssNAI	GTATAC	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	124
CviJI	RGCY	1 cut(s)	52
CviKI_1	RGCY	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
FaiI	YATR	5 cut(s)	15, 27, 124, 128, 164
FblI	GTMKAC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	20
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	43, 81
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	28, 33, 74
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	70, 110, 184
MnlI	CCTC	1 cut(s)	99
MseI	TTAA	2 cut(s)	93, 190
MspI	CCGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	90
NdeII	GATC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	93, 190
Sau3AI	GATC	1 cut(s)	16
SetI	ASST	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	121
SgeI	CNNG	7 cut(s)	32, 45, 55, 65, 93, 101, 147
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SspMI	CTAG	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	93, 190
Tru9I	TTAA	2 cut(s)	93, 190
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.