Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Forward (+)

20882729 .. 20885915

Gene Structure 3187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGTGATTATGAAGAAGATGAAAGATTCAGTCTTGTTCCTCGTCGTAGGCCTCTTCTCTTTATCTGTTTTGGTCTCTCAGTCGATCGCAGGGAGAGTCAAAGCTCCATTGTTGCAGAGCAATACTGGTGGATTAGTTTTCAGCAAATCCTTCAATTCGATCTATGATACTTCTATGTACGGACGCTTGCAGCTCAACAATGGCCTTGCTCGAACTCCACAAATGGGATGGAATAGCTGGAATTTCTTTGCTTGCAATATCAATGAAACTGTCATAAAGGAAACTGCTGATGCTTTGGTTTCATCTGGCCTGGCTGATTTAGGATACATACATGTCAATATTGATGATTGCTGGTCCAATTTGTTACGCGATTCAGAGGGTCAATTGGTTCCTCATCCTGAAACCTTCCCATCAGGAATTAAGCTTCTTGCTGATTATGTTCATTCAAAGGGTCTCAAACTCGGTATATATTCTGATGCTGGCGTTTTCACTTGTGAAGTTCATCCGGGATCCCTTTTCCATGAAGTGGATGATGCAGACATTTTTGCTTCTTGGGGCGTGGATTATCTGAAATATGACAATTGTTTCAACCTGGGAATAAAACCAATCGAAAGATACCCTCCAATGCGTGATGCTCTAAACGCAACTGGCCGCTCAATCTTCTATTCACTATGTGAATGGGGCGTTGATGATCCTGCCTTGTGGGCAAAAGAAGTTGGAAACAGTTGGCGCACAACCGATGACATCAACGATACATGGGCAAGTATGACTACAATTGCTGATTTGAATAACAAGTGGGCTGCATATGCTGGACCTGGTGGTTGGAATGATCCGGATATGTTGGAAATAGGGAATGGAGGGATGACATACGAGGAGTATCGAGGTCATTTTAGCATTTGGGCTTTGATGAAGGCACCTCTCTTGATTGGTTGTGATGTAAGAAACATGACCGCTGAAACTTTGGAGATTTTGAGTAATAAGGAGATTATCGCTGTTAACCAAGACCCACTTGGTGTTCAAGGAAGGAAAATTCAAGCCAATGGAGAAAATGATTGTCAGCAGGTGTGGTCAGGACCTTTATCTGGTGACCGTATGGTAGTTGCTCTCTGGAACCGTTGCTCTGAGCCAGCAACTATTACAGCATCATGGGATATGATCGGTCTTGAATCTACCATTAGCGTTTCAGTAAGAGATTTGTGGCAGCACAAAGATGTAACAGAGAATACTTCTGGCTCCTTTGAAGCTCAAGTTGACGCACACGACTGTCATATGTACGTTCTCACTCCCCAGACAGTATCACACTCTGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

437

Amino Acids

48.36

Weight (kDa)

4.73

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	72 - 335	2.3e-81	Alpha galactosidase A
Melibiase_C	PF17801	352 - 427	1.1e-21	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1051
Acc36I	ACCTGC	1 cut(s)	1051
AccB1I	GGYRCC	1 cut(s)	913
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	654
AccII	CGCG	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	832
AciI	CCGC	2 cut(s)	652, 951
AclWI	GGATC	4 cut(s)	504, 517, 686, 824
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	241, 1029
AdeI	CACNNNGTG	2 cut(s)	674, 1013
AfaI	GTAC	2 cut(s)	179, 1274
AfiI	CCNNNNNNNGG	3 cut(s)	224, 526, 1082
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	8 cut(s)	154, 447, 589, 787, 1019, 1034, 1166, 1241
AjnI	CCWGG	3 cut(s)	309, 591, 814
AluBI	AGCT	5 cut(s)	104, 193, 237, 424, 1244
AluI	AGCT	5 cut(s)	104, 193, 237, 424, 1244
Alw26I	GTCTC	2 cut(s)	79, 458
AlwI	GGATC	4 cut(s)	504, 517, 686, 824
Aor13HI	TCCGGA	1 cut(s)	832
AoxI	GGCC	4 cut(s)	49, 202, 307, 649
ApeKI	GCWGC	3 cut(s)	190, 800, 1201
ApoI	RAATTY	2 cut(s)	241, 1029
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	3 cut(s)	354, 812, 1073
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	2 cut(s)	16, 1097
AvaII	GGWCC	3 cut(s)	354, 812, 1073
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	202, 787, 1213
BccI	CCATC	2 cut(s)	222, 418
BciT130I	CCWGG	3 cut(s)	311, 593, 816
BciVI	GTATCC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	79, 458
BfuAI	ACCTGC	1 cut(s)	1051
BfuI	GTATCC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	704
BisI	GCNGC	4 cut(s)	191, 652, 801, 1202
BlsI	GCNGC	4 cut(s)	192, 653, 802, 1203
Bme1390I	CCNGG	4 cut(s)	311, 507, 593, 816
Bme18I	GGWCC	3 cut(s)	354, 812, 1073
BmgT120I	GGNCC	3 cut(s)	354, 812, 1073
BmiI	GGNNCC	5 cut(s)	390, 511, 915, 1112, 1234
BmrFI	CCNGG	4 cut(s)	311, 507, 593, 816
BmsI	GCATC	5 cut(s)	280, 466, 523, 622, 1151
BpuEI	CTTGAG	1 cut(s)	1230
BpuMI	CCSGG	1 cut(s)	507
BsaI	GGTCTC	2 cut(s)	79, 458
BsaJI	CCNNGG	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 526, 1082
Bse1I	ACTGG	2 cut(s)	130, 652
BseAI	TCCGGA	1 cut(s)	832
BseBI	CCWGG	3 cut(s)	311, 593, 816
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	5 cut(s)	233, 394, 502, 535, 867
BseLI	CCNNNNNNNGG	3 cut(s)	224, 526, 1082
BseMII	CTCAG	2 cut(s)	92, 1113
BseNI	ACTGG	2 cut(s)	130, 652
BseRI	GAGGAG	1 cut(s)	887
BseXI	GCAGC	3 cut(s)	202, 787, 1213
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	51, 204, 309, 651
BshNI	GGYRCC	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	506, 833
BslI	CCNNNNNNNGG	3 cut(s)	224, 526, 1082
BsmAI	GTCTC	2 cut(s)	79, 458
BsnI	GGCC	4 cut(s)	51, 204, 309, 651
Bso31I	GGTCTC	2 cut(s)	79, 458
Bsp13I	TCCGGA	1 cut(s)	832
Bsp143I	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
BspACI	CCGC	2 cut(s)	652, 951
BspANI	GGCC	4 cut(s)	51, 204, 309, 651
BspCNI	CTCAG	2 cut(s)	91, 1114
BspEI	TCCGGA	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	5 cut(s)	390, 511, 915, 1112, 1234
BspMI	ACCTGC	1 cut(s)	1051
BspPI	GGATC	4 cut(s)	504, 517, 686, 824
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	2 cut(s)	79, 458
BsrBI	CCGCTC	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	130, 652
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
Bst2UI	CCWGG	3 cut(s)	311, 593, 816
Bst4CI	ACNGT	6 cut(s)	271, 725, 1091, 1115, 1265, 1294
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	4 cut(s)	188, 253, 481, 1128
BstDEI	CTNAG	2 cut(s)	78, 1122
BstEII	GGTNACC	1 cut(s)	1085
BstF5I	GGATG	5 cut(s)	233, 394, 502, 535, 867
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	6 cut(s)	87, 162, 512, 694, 832, 1158
BstMAI	GTCTC	2 cut(s)	79, 458
BstMBI	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	641, 704, 806
BstNI	CCWGG	3 cut(s)	311, 593, 816
BstNSI	RCATGY	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	1085
BstSCI	CCNGG	4 cut(s)	309, 505, 591, 814
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	202, 787, 1213
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	4 cut(s)	51, 204, 309, 651
BtsCI	GGATG	5 cut(s)	233, 394, 502, 535, 867
BveI	ACCTGC	1 cut(s)	1051
Cac8I	GCNNGC	4 cut(s)	188, 253, 481, 1128
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	354, 812, 1073
CseI	GACGC	2 cut(s)	192, 1262
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	178, 1273
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	5 cut(s)	332, 521, 756, 946, 1146
CviQI	GTAC	2 cut(s)	178, 1273
DdeI	CTNAG	2 cut(s)	78, 1122
DpnI	GATC	6 cut(s)	86, 161, 511, 693, 831, 1157
DpnII	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
DraIII	CACNNNGTG	2 cut(s)	674, 1013
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	51
Eco31I	GGTCTC	2 cut(s)	79, 458
Eco47I	GGWCC	3 cut(s)	354, 812, 1073
Eco91I	GGTNACC	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoO65I	GGTNACC	1 cut(s)	1085
EcoRII	CCWGG	3 cut(s)	309, 591, 814
FaeI	CATG	5 cut(s)	335, 524, 759, 949, 1149
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FatI	CATG	5 cut(s)	331, 520, 755, 945, 1145
FauNDI	CATATG	2 cut(s)	805, 1269
Fnu4HI	GCNGC	4 cut(s)	191, 652, 801, 1202
FokI	GGATG	5 cut(s)	240, 381, 489, 542, 874
Fsp4HI	GCNGC	4 cut(s)	191, 652, 801, 1202
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	4 cut(s)	191, 652, 801, 1202
HaeIII	GGCC	4 cut(s)	51, 204, 309, 651
HapII	CCGG	2 cut(s)	506, 833
HgaI	GACGC	2 cut(s)	192, 1262
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	335, 524, 759, 949, 1149
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HincII	GTYRAC	2 cut(s)	997, 1252
HindII	GTYRAC	2 cut(s)	997, 1252
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	26, 96, 371, 1166
HpaI	GTTAAC	1 cut(s)	997
HpaII	CCGG	2 cut(s)	506, 833
HphI	GGTGA	2 cut(s)	16, 1097
Hpy166II	GTNNAC	2 cut(s)	997, 1252
Hpy188I	TCNGA	5 cut(s)	376, 475, 570, 1123, 1306
Hpy188III	TCNNGA	7 cut(s)	398, 414, 833, 922, 1071, 1108, 1163
Hpy8I	GTNNAC	2 cut(s)	997, 1252
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	160, 415, 904, 1017
HpyCH4III	ACNGT	6 cut(s)	271, 725, 1091, 1115, 1265, 1294
HpyCH4IV	ACGT	1 cut(s)	1275
HpyCH4V	TGCA	5 cut(s)	115, 190, 255, 536, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	641, 704, 806
HpyF3I	CTNAG	2 cut(s)	78, 1122
HpySE526I	ACGT	1 cut(s)	1275
Hsp92II	CATG	5 cut(s)	335, 524, 759, 949, 1149
HspAI	GCGC	1 cut(s)	730
Kpn2I	TCCGGA	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	997
Kzo9I	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
LmnI	GCTCC	2 cut(s)	109, 1238
Lsp1109I	GCAGC	3 cut(s)	202, 787, 1213
LweI	GCATC	5 cut(s)	280, 466, 523, 622, 1151
MabI	ACCWGGT	1 cut(s)	814
MaeII	ACGT	1 cut(s)	1275
MaeIII	GTNAC	3 cut(s)	363, 1085, 1213
MalI	GATC	6 cut(s)	86, 161, 511, 693, 831, 1157
MbiI	CCGCTC	1 cut(s)	654
MboI	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
MboII	GAAGA	4 cut(s)	25, 28, 46, 652
MfeI	CAATTG	3 cut(s)	383, 580, 774
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	8 cut(s)	154, 241, 358, 383, 417, 580, 774, 1029
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	3 cut(s)	697, 803, 822
MnlI	CCTC	9 cut(s)	50, 62, 370, 402, 630, 851, 865, 875, 927
MroI	TCCGGA	1 cut(s)	832
MseI	TTAA	2 cut(s)	420, 996
MslI	CAYNNNNRTG	2 cut(s)	1209, 1305
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	2 cut(s)	506, 833
MspR9I	CCNGG	4 cut(s)	311, 507, 593, 816
MunI	CAATTG	3 cut(s)	383, 580, 774
MvaI	CCWGG	3 cut(s)	311, 593, 816
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	641, 704, 806
NciI	CCSGG	1 cut(s)	507
NdeI	CATATG	2 cut(s)	805, 1269
NdeII	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
NlaIII	CATG	5 cut(s)	335, 524, 759, 949, 1149
NlaIV	GGNNCC	5 cut(s)	390, 511, 915, 1112, 1234
NmuCI	GTSAC	1 cut(s)	1085
NspI	RCATGY	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	1051
PceI	AGGCCT	1 cut(s)	51
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	26, 371, 1166
PflMI	CCANNNNNTGG	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	4 cut(s)	192, 653, 802, 1203
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	1073
PscI	ACATGT	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	1073
Psp6I	CCWGG	3 cut(s)	309, 591, 814
PspEI	GGTNACC	1 cut(s)	1085
PspGI	CCWGG	3 cut(s)	309, 591, 814
PspN4I	GGNNCC	5 cut(s)	390, 511, 915, 1112, 1234
PspPI	GGNCC	3 cut(s)	354, 812, 1073
PspPPI	RGGWCCY	1 cut(s)	1073
PsuI	RGATCY	1 cut(s)	509
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	2 cut(s)	179, 1274
RsaNI	GTAC	2 cut(s)	178, 1273
RseI	CAYNNNNRTG	2 cut(s)	1209, 1305
SaqAI	TTAA	2 cut(s)	420, 996
SatI	GCNGC	4 cut(s)	191, 652, 801, 1202
Sau3AI	GATC	6 cut(s)	84, 159, 509, 691, 829, 1155
Sau96I	GGNCC	3 cut(s)	354, 812, 1073
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	4 cut(s)	311, 507, 593, 816
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	5 cut(s)	280, 466, 523, 622, 1151
SinI	GGWCC	3 cut(s)	354, 812, 1073
SmiMI	CAYNNNNRTG	2 cut(s)	1209, 1305
SmlI	CTYRAG	1 cut(s)	1245
SmoI	CTYRAG	1 cut(s)	1245
Sse9I	AATT	8 cut(s)	154, 241, 358, 383, 417, 580, 774, 1029
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	652, 951
SspI	AATATT	1 cut(s)	340
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	309, 505, 591, 814
TaaI	ACNGT	6 cut(s)	271, 725, 1091, 1115, 1265, 1294
TaiI	ACGT	1 cut(s)	1278
TaqI	TCGA	5 cut(s)	83, 158, 211, 609, 880
TaqII	GACCGA	1 cut(s)	1148
TasI	AATT	8 cut(s)	154, 241, 358, 383, 417, 580, 774, 1029
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	3 cut(s)	26, 371, 1166
Tru1I	TTAA	2 cut(s)	420, 996
Tru9I	TTAA	2 cut(s)	420, 996
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	3 cut(s)	190, 800, 1201
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	8 cut(s)	26, 35, 279, 291, 431, 491, 537, 923
TspGWI	ACGGA	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	3 cut(s)	354, 812, 1073
XapI	RAATTY	2 cut(s)	241, 1029
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	2 cut(s)	225, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.