Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Reverse (-)

61344543 .. 61348853

Gene Structure 4311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCGAAGAGCAAGATCATCAGTTTCTCTGTGTTCACTCTGATTCTCTGTCTGTCAGCTCTGGCTATTGCAATTGCAGGCAGAGTAGCTGTGCCTCTGTTGCAATTCCAGGACAAACCCAGTTTCCTGAGACCAACTTTTAGTCGCATTTACGATACTTCAATGTATGGTGCTCTGCAACTCAATAATGGATTGGCTCAAACGCCTCAAATGGGGTGGAATAGCTGGAATTTCTTTGCTTGTGATATTAATGAAACCGTGATCAAGGAAACAGCTGATGCCCTCATCTCCACCGGATTAGCTGATTTAGGTTATGTGTATGTCAATATAGATGATTGCTGGTCTTTACCAACACGAAATTCTGAGGGTCAACTGGTCCCTGATCCTAAAACATTTCCATCGGGAATTAAAGCTCTTGCCGATTATATACATGGGAAGGGCCTCAAGCTTGGAATATATTCTGATGCCGGGGTTTTTACATGTCAAGTTCGACCAGGTTCAATTTATCATGAAAGTGATGATGCCAAGCTGTTTGCTTCTTGGGTTAGCTTAGATTACTTGAAGTATGACAACTGTTACAATCTGGGCATCCCACCAAAAGAACGGTACCCACCCATGCGTGAGGCCCTAAATACAACTGGACGCACAATTTTCTATTCAATTTGTGAATGGGGTGTTGATGATCCTGCTTTATGGGCTGGGAAAGTTGGGAATAGTTGGCGTACAACAGATGATATCAATGATACATGGGCAAGCATGACTACAATTGCTGATTTGAATGACAAGTGGGCATCATATGCTGGACCTGGTGGATGGAATGATCCAGATATGTTGGAAGTTGGCAATGGAGGCATGAGTTACCAGGAATACCGTGCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTGATTGGTTGTGATGTTAGAAACATGACTGCAGAAACATACGAAATTCTGAGCAATGAGGAGGTTATTGCTATAAACCAAGATTCTCTTGGGGTTCAAGGAAGGAAAGTGAATGTTTCAGGAACAGATGGGGTCTACCAGGTTTGGGCGGGTCCTCTATCTGGACATCGTTTGGCTGTTGCTCTTTGGAATCGGGGTTCAACAGCAAAGACTATAACAGCTAAATGGGAAGCACTTGGACTGCAATCCAGCATTAGTGTCTCAGTGAGAGATTTGTGGCAGCACAAACTAGTTAAGGAGGATGCCGTATCATCATTTGGTGCTCTGGTTGAAGCTCATGACTGTCACCTGTACCTCTTCACCCCCAAGACTGAGTCACTAAGTACTTTAGCCTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

437

Amino Acids

48.19

Weight (kDa)

5.16

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	68 - 332	8e-79	Alpha galactosidase A
Melibiase_C	PF17801	348 - 423	4.2e-18	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	1047
AciI	CCGC	1 cut(s)	1061
AclWI	GGATC	3 cut(s)	377, 677, 815
AcsI	RAATTY	3 cut(s)	229, 358, 957
AfaI	GTAC	4 cut(s)	608, 724, 1265, 1297
AfiI	CCNNNNNNNGG	3 cut(s)	212, 1057, 1073
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	8 cut(s)	162, 501, 562, 660, 778, 1010, 1113, 1244
AhlI	ACTAGT	1 cut(s)	1201
AjnI	CCWGG	5 cut(s)	108, 493, 805, 861, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AloI	GAACNNNNNNTCC	2 cut(s)	1093, 1125
Alw21I	GWGCWC	3 cut(s)	175, 877, 1237
Alw26I	GTCTC	2 cut(s)	124, 1177
AlwI	GGATC	3 cut(s)	377, 677, 815
AoxI	GGCC	3 cut(s)	439, 624, 903
ApeKI	GCWGC	1 cut(s)	1192
ApoI	RAATTY	3 cut(s)	229, 358, 957
AseI	ATTAAT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	606
AspS9I	GGNCC	6 cut(s)	376, 439, 625, 803, 904, 1064
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	1250, 1264
AvaII	GGWCC	3 cut(s)	376, 803, 1064
BanI	GGYRCC	1 cut(s)	606
Bbv12I	GWGCWC	3 cut(s)	175, 877, 1237
BbvI	GCAGC	1 cut(s)	1204
BccI	CCATC	3 cut(s)	406, 807, 1034
BceAI	ACGGC	1 cut(s)	1202
BciT130I	CCWGG	5 cut(s)	110, 495, 807, 863, 1052
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	124, 1177
BcuI	ACTAGT	1 cut(s)	1201
BfaI	CTAG	1 cut(s)	1202
BfmI	CTRYAG	1 cut(s)	942
BisI	GCNGC	1 cut(s)	1193
BlsI	GCNGC	1 cut(s)	1194
BmcAI	AGTACT	1 cut(s)	1297
Bme1390I	CCNGG	6 cut(s)	110, 469, 495, 807, 863, 1052
Bme18I	GGWCC	3 cut(s)	376, 803, 1064
BmgT120I	GGNCC	6 cut(s)	376, 439, 625, 803, 904, 1064
BmiI	GGNNCC	4 cut(s)	378, 608, 906, 1065
BmrFI	CCNGG	6 cut(s)	110, 469, 495, 807, 863, 1052
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	7 cut(s)	268, 454, 511, 597, 800, 894, 1204
BmuI	ACTGGG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 1057, 1073
Bse1I	ACTGG	3 cut(s)	120, 378, 643
Bse3DI	GCAATG	2 cut(s)	850, 973
BseBI	CCWGG	5 cut(s)	110, 495, 807, 863, 1052
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	588, 818, 1219
BseLI	CCNNNNNNNGG	3 cut(s)	212, 1057, 1073
BseMI	GCAATG	2 cut(s)	850, 973
BseMII	CTCAG	5 cut(s)	119, 354, 953, 1188, 1275
BseNI	ACTGG	3 cut(s)	120, 378, 643
BseRI	GAGGAG	1 cut(s)	986
BseXI	GCAGC	1 cut(s)	1204
BseYI	CCCAGC	1 cut(s)	698
BshFI	GGCC	3 cut(s)	441, 626, 905
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	175, 877, 1237
BsiSI	CCGG	2 cut(s)	294, 468
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	212, 1057, 1073
BsmAI	GTCTC	2 cut(s)	124, 1177
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	441, 626, 905
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	175, 877, 1237
Bsp143I	GATC	5 cut(s)	15, 261, 382, 682, 820
BspACI	CCGC	1 cut(s)	1061
BspANI	GGCC	3 cut(s)	441, 626, 905
BspCNI	CTCAG	5 cut(s)	120, 355, 954, 1187, 1276
BspHI	TCATGA	2 cut(s)	508, 1249
BspLI	GGNNCC	4 cut(s)	378, 608, 906, 1065
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	3 cut(s)	377, 677, 815
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	606
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	2 cut(s)	850, 973
BsrI	ACTGG	3 cut(s)	120, 378, 643
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	15, 261, 382, 682, 820
Bst2UI	CCWGG	5 cut(s)	110, 495, 807, 863, 1052
Bst4CI	ACNGT	5 cut(s)	259, 575, 606, 872, 1256
Bst6I	CTCTTC	2 cut(s)	2, 1274
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	79, 754
BstDEI	CTNAG	7 cut(s)	128, 363, 550, 962, 1174, 1284, 1292
BstF5I	GGATG	3 cut(s)	588, 818, 1219
BstKTI	GATC	5 cut(s)	18, 264, 385, 685, 823
BstMAI	GTCTC	2 cut(s)	124, 1177
BstMBI	GATC	5 cut(s)	15, 261, 382, 682, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 695, 797, 849
BstNI	CCWGG	5 cut(s)	110, 495, 807, 863, 1052
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	6 cut(s)	108, 467, 493, 805, 861, 1050
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	1 cut(s)	1204
BsuRI	GGCC	3 cut(s)	441, 626, 905
BtsCI	GGATG	3 cut(s)	588, 818, 1219
BtsIMutI	CAGTG	1 cut(s)	1182
Cac8I	GCNNGC	2 cut(s)	79, 754
CciI	TCATGA	2 cut(s)	508, 1249
Cfr13I	GGNCC	6 cut(s)	376, 439, 625, 803, 904, 1064
CseI	GACGC	1 cut(s)	651
CsiI	ACCWGGT	3 cut(s)	493, 805, 1050
Csp6I	GTAC	4 cut(s)	607, 723, 1264, 1296
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	9 cut(s)	431, 480, 509, 616, 747, 757, 853, 937, 1250
CviQI	GTAC	4 cut(s)	607, 723, 1264, 1296
DdeI	CTNAG	7 cut(s)	128, 363, 550, 962, 1174, 1284, 1292
DpnI	GATC	5 cut(s)	17, 263, 384, 684, 822
DpnII	GATC	5 cut(s)	15, 261, 382, 682, 820
Eam1104I	CTCTTC	2 cut(s)	2, 1274
EarI	CTCTTC	2 cut(s)	2, 1274
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	3 cut(s)	376, 803, 1064
EcoO109I	RGGNCCY	4 cut(s)	439, 625, 904, 1064
EcoRII	CCWGG	5 cut(s)	108, 493, 805, 861, 1050
EcoRV	GATATC	1 cut(s)	736
FaeI	CATG	9 cut(s)	434, 483, 512, 619, 750, 760, 856, 940, 1253
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	9 cut(s)	430, 479, 508, 615, 746, 756, 852, 936, 1249
FauI	CCCGC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	1 cut(s)	1193
FokI	GGATG	3 cut(s)	575, 825, 1226
Fsp4HI	GCNGC	1 cut(s)	1193
FspBI	CTAG	1 cut(s)	1202
GluI	GCNGC	1 cut(s)	1193
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	441, 626, 905
HapII	CCGG	2 cut(s)	294, 468
HgaI	GACGC	1 cut(s)	651
Hin1II	CATG	9 cut(s)	434, 483, 512, 619, 750, 760, 856, 940, 1253
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	43, 995, 1102, 1286
HpaII	CCGG	2 cut(s)	294, 468
HphI	GGTGA	2 cut(s)	1250, 1264
Hpy166II	GTNNAC	3 cut(s)	36, 371, 1048
Hpy188I	TCNGA	4 cut(s)	42, 364, 463, 963
Hpy188III	TCNNGA	7 cut(s)	127, 402, 509, 824, 1032, 1074, 1250
Hpy8I	GTNNAC	3 cut(s)	36, 371, 1048
HpyAV	CCTTC	3 cut(s)	430, 895, 1008
HpyCH4III	ACNGT	5 cut(s)	259, 575, 606, 872, 1256
HpyCH4V	TGCA	6 cut(s)	71, 77, 103, 178, 944, 1156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 695, 797, 849
HpyF3I	CTNAG	7 cut(s)	128, 363, 550, 962, 1174, 1284, 1292
Hsp92II	CATG	9 cut(s)	434, 483, 512, 619, 750, 760, 856, 940, 1253
KpnI	GGTACC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	15, 261, 382, 682, 820
LguI	GCTCTTC	1 cut(s)	2
Lsp1109I	GCAGC	1 cut(s)	1204
LweI	GCATC	7 cut(s)	268, 454, 511, 597, 800, 894, 1204
MabI	ACCWGGT	3 cut(s)	493, 805, 1050
MaeI	CTAG	1 cut(s)	1202
MaeIII	GTNAC	4 cut(s)	575, 857, 1256, 1287
MalI	GATC	5 cut(s)	17, 263, 384, 684, 822
MboI	GATC	5 cut(s)	15, 261, 382, 682, 820
MboII	GAAGA	2 cut(s)	19, 1261
MfeI	CAATTG	2 cut(s)	72, 765
MhlI	GDGCHC	3 cut(s)	175, 877, 1237
MlyI	GAGTC	1 cut(s)	1295
MmeI	TCCRAC	1 cut(s)	813
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	4 cut(s)	249, 408, 1206, 1312
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	294, 468
MspR9I	CCNGG	6 cut(s)	110, 469, 495, 807, 863, 1052
MunI	CAATTG	2 cut(s)	72, 765
MvaI	CCWGG	5 cut(s)	110, 495, 807, 863, 1052
MwoI	GCNNNNNNNGC	4 cut(s)	100, 695, 797, 849
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	5 cut(s)	15, 261, 382, 682, 820
NlaIII	CATG	9 cut(s)	434, 483, 512, 619, 750, 760, 856, 940, 1253
NlaIV	GGNNCC	4 cut(s)	378, 608, 906, 1065
NmuCI	GTSAC	2 cut(s)	1256, 1287
NspI	RCATGY	1 cut(s)	483
PagI	TCATGA	2 cut(s)	508, 1249
PciI	ACATGT	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	43, 995, 1102
PflFI	GACNNNGTC	1 cut(s)	1285
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	1194
PleI	GAGTC	1 cut(s)	1294
PpsI	GAGTC	1 cut(s)	1294
PpuMI	RGGWCCY	1 cut(s)	1064
PscI	ACATGT	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	1064
Psp6I	CCWGG	5 cut(s)	108, 493, 805, 861, 1050
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	5 cut(s)	108, 493, 805, 861, 1050
PspN4I	GGNNCC	4 cut(s)	378, 608, 906, 1065
PspPI	GGNCC	6 cut(s)	376, 439, 625, 803, 904, 1064
PspPPI	RGGWCCY	1 cut(s)	1064
PstI	CTGCAG	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	1285
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	608, 724, 1265, 1297
RsaNI	GTAC	4 cut(s)	607, 723, 1264, 1296
RseI	CAYNNNNRTG	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	4 cut(s)	249, 408, 1206, 1312
SatI	GCNGC	1 cut(s)	1193
Sau3AI	GATC	5 cut(s)	15, 261, 382, 682, 820
Sau96I	GGNCC	6 cut(s)	376, 439, 625, 803, 904, 1064
ScaI	AGTACT	1 cut(s)	1297
SchI	GAGTC	1 cut(s)	1295
ScrFI	CCNGG	6 cut(s)	110, 469, 495, 807, 863, 1052
SduI	GDGCHC	3 cut(s)	175, 877, 1237
SexAI	ACCWGGT	3 cut(s)	493, 805, 1050
SfaNI	GCATC	7 cut(s)	268, 454, 511, 597, 800, 894, 1204
SfcI	CTRYAG	1 cut(s)	942
SinI	GGWCC	3 cut(s)	376, 803, 1064
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	1201
SsiI	CCGC	1 cut(s)	1061
SspMI	CTAG	1 cut(s)	1202
StyD4I	CCNGG	6 cut(s)	108, 467, 493, 805, 861, 1050
TaaI	ACNGT	5 cut(s)	259, 575, 606, 872, 1256
TaqI	TCGA	1 cut(s)	490
TatI	WGTACW	1 cut(s)	1295
TfiI	GAWTC	3 cut(s)	43, 995, 1102
Tru1I	TTAA	4 cut(s)	249, 408, 1206, 1312
Tru9I	TTAA	4 cut(s)	249, 408, 1206, 1312
TscAI	CASTG	1 cut(s)	1182
TseFI	GTSAC	2 cut(s)	1256, 1287
TseI	GCWGC	1 cut(s)	1192
Tsp45I	GTSAC	2 cut(s)	1256, 1287
TspDTI	ATGAA	3 cut(s)	267, 525, 914
TspRI	CASTG	1 cut(s)	1182
Tth111I	GACNNNGTC	1 cut(s)	1285
VpaK11BI	GGWCC	3 cut(s)	376, 803, 1064
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	3 cut(s)	229, 358, 957
XceI	RCATGY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XmiI	GTMKAC	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	1202
ZrmI	AGTACT	1 cut(s)	1297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.