Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Reverse (-)

47472744 .. 47477086

Gene Structure 4343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGAAGAGCAAGATCATCACTTTCTCTATGTTCACTCTGATTCTCTATCTGTCAGCTCTGGCTATTGCAATTGCAGGCAGAGTAGCTGTGCCTCTGTTGCAATTCCAGGACAAACCCAGTTTCCTGACACCAACTTTTAGTCGCATTTACGATACTTCAATGTATGGTACTCTGCAACTCAACAACGGATTGGCTCACACGCCTCAAATGGGGTGGAATAGCTGGAATTTCTTTGCTTGTGATATTAATGAAACCGTGATCAAGGAAACAGCTGATGCGCTCATCTCAACCGGATTAGCTGATTTAGGTTATGTGTATGTCAATATAGATGATTGCTGGTCTTTACCAACACGAAATTCTGAGGGTCAACTGGTCTCTGATCCTAAAACATTTCCATCGGGAATTAAAGCTCTTGCCAATTATATACATGGGAAGGGCCTTAAGCTTGGAATATATTCTGACGCCGGGGTTTTTACATGTCAAGTTCGACCAGGTTCAATTTATCATGAAAGTGATGATGCCAAGCTGTTTGCTTCTTGGGACATAGATTATTTGAAGTATGACAACTGTTACAATCTGGGCATCCCACCAAAAGAACGGTACCCACCCATGCGTGAGGCCCTAAATGCATCTGGACGCACAATTTTCTATTCAATTTGTGAATGGGGTGTTGATGATCCTGCTTTATGGGCCGGGAGAGTTGGGAATAGTTGGCGTACAACAGATGATATCAATGATACATGGGCAAGCATGACTACGATTGCTGATTTGAATGACAAGTGGGCGTCGTATGCAGGACCTGGTGGATGGAATGATCCAGATATGTTGGAAGTTGGCAATGGAGGCATGAGTTACCAGGAATACCGTGCTCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTGATTGGTTGTGATGTTAGAAACATGACTGCAGAAACATACGAAATTCTGAGCAATGAGGAGGTTATTGCTATAAACCAAGATTCTCTTGGGGTTCAGGGAAGGAAAGTGAATGTTTCAGGAACAGATGGGGTCTATCAGGTTTGGGCGGGTCCTCTATCTGGACATCGTTTGGCTGTTGCTCTTTGGAATCGGGGTTCAACAGCAAAGACTATAACAGCTAAATGGGAAGCACTTGGACTGCAATCCAGCATTAGTGTCTCAGTGAGAGATTTGTGGCAGCACAAACTAGTTAAGGAGGATGCCTTATCATCATTTGGTGCTCTGGTTGAAGCTCATGACTGTCACCTGTACCTCTTCACCCCCAAGACTGAGTCACTAAGTACTTTAGCCTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

436

Amino Acids

48.19

Weight (kDa)

5.15

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	68 - 331	6.7e-80	Alpha galactosidase A
Melibiase_C	PF17801	347 - 422	4.3e-18	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	1 cut(s)	1058
AclWI	GGATC	3 cut(s)	377, 674, 812
AcsI	RAATTY	3 cut(s)	229, 358, 954
AcyI	GRCGYC	2 cut(s)	465, 788
AfaI	GTAC	5 cut(s)	172, 605, 721, 1262, 1294
AfiI	CCNNNNNNNGG	2 cut(s)	212, 1070
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	7 cut(s)	162, 501, 559, 657, 775, 1110, 1241
AhlI	ACTAGT	1 cut(s)	1198
AjnI	CCWGG	4 cut(s)	108, 493, 802, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AloI	GAACNNNNNNTCC	2 cut(s)	1090, 1122
Alw21I	GWGCWC	2 cut(s)	874, 1234
Alw26I	GTCTC	2 cut(s)	382, 1174
AlwI	GGATC	3 cut(s)	377, 674, 812
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	439, 621, 693, 900
ApeKI	GCWGC	1 cut(s)	1189
ApoI	RAATTY	3 cut(s)	229, 358, 954
AseI	ATTAAT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	6 cut(s)	439, 622, 693, 800, 901, 1061
AsuC2I	CCSGG	2 cut(s)	469, 697
AsuHPI	GGTGA	2 cut(s)	1247, 1261
AvaII	GGWCC	2 cut(s)	800, 1061
BanI	GGYRCC	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	874, 1234
BbvI	GCAGC	1 cut(s)	1201
BccI	CCATC	3 cut(s)	406, 804, 1031
BciT130I	CCWGG	4 cut(s)	110, 495, 804, 860
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	469, 697
BcoDI	GTCTC	2 cut(s)	382, 1174
BcuI	ACTAGT	1 cut(s)	1198
BfaI	CTAG	1 cut(s)	1199
BfmI	CTRYAG	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	1190
BlsI	GCNGC	1 cut(s)	1191
BmcAI	AGTACT	1 cut(s)	1294
Bme1390I	CCNGG	6 cut(s)	110, 469, 495, 697, 804, 860
Bme18I	GGWCC	2 cut(s)	800, 1061
BmgT120I	GGNCC	6 cut(s)	439, 622, 693, 800, 901, 1061
BmiI	GGNNCC	3 cut(s)	605, 903, 1062
BmrFI	CCNGG	6 cut(s)	110, 469, 495, 697, 804, 860
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	6 cut(s)	268, 511, 594, 641, 891, 1201
BmuI	ACTGGG	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	469, 697
BsaHI	GRCGYC	2 cut(s)	465, 788
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 1070
Bse1I	ACTGG	2 cut(s)	120, 378
Bse3DI	GCAATG	2 cut(s)	847, 970
BseBI	CCWGG	4 cut(s)	110, 495, 804, 860
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	585, 815, 1216
BseLI	CCNNNNNNNGG	2 cut(s)	212, 1070
BseMI	GCAATG	2 cut(s)	847, 970
BseMII	CTCAG	4 cut(s)	354, 950, 1185, 1272
BseNI	ACTGG	2 cut(s)	120, 378
BseRI	GAGGAG	1 cut(s)	983
BseXI	GCAGC	1 cut(s)	1201
BshFI	GGCC	4 cut(s)	441, 623, 695, 902
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	2 cut(s)	874, 1234
BsiSI	CCGG	3 cut(s)	294, 468, 696
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	212, 1070
BsmAI	GTCTC	2 cut(s)	382, 1174
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	4 cut(s)	441, 623, 695, 902
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	874, 1234
Bsp143I	GATC	5 cut(s)	15, 261, 382, 679, 817
BspACI	CCGC	1 cut(s)	1058
BspANI	GGCC	4 cut(s)	441, 623, 695, 902
BspCNI	CTCAG	4 cut(s)	355, 951, 1184, 1273
BspHI	TCATGA	2 cut(s)	508, 1246
BspLI	GGNNCC	3 cut(s)	605, 903, 1062
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	3 cut(s)	377, 674, 812
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	603
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	847, 970
BsrI	ACTGG	2 cut(s)	120, 378
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	15, 261, 382, 679, 817
BssNI	GRCGYC	2 cut(s)	465, 788
Bst2UI	CCWGG	4 cut(s)	110, 495, 804, 860
Bst4CI	ACNGT	5 cut(s)	259, 572, 603, 869, 1253
Bst6I	CTCTTC	2 cut(s)	2, 1271
BstACI	GRCGYC	2 cut(s)	465, 788
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	79, 751
BstDEI	CTNAG	5 cut(s)	363, 959, 1171, 1281, 1289
BstF5I	GGATG	3 cut(s)	585, 815, 1216
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	18, 264, 385, 682, 820
BstMAI	GTCTC	2 cut(s)	382, 1174
BstMBI	GATC	5 cut(s)	15, 261, 382, 679, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 629, 692, 794, 846
BstNI	CCWGG	4 cut(s)	110, 495, 804, 860
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	6 cut(s)	108, 467, 493, 695, 802, 858
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	1 cut(s)	1201
BsuRI	GGCC	4 cut(s)	441, 623, 695, 902
BtsCI	GGATG	3 cut(s)	585, 815, 1216
BtsIMutI	CAGTG	1 cut(s)	1179
Cac8I	GCNNGC	2 cut(s)	79, 751
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	2 cut(s)	508, 1246
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	6 cut(s)	439, 622, 693, 800, 901, 1061
CseI	GACGC	3 cut(s)	473, 648, 777
CsiI	ACCWGGT	2 cut(s)	493, 802
Csp6I	GTAC	5 cut(s)	171, 604, 720, 1261, 1293
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	9 cut(s)	431, 480, 509, 613, 744, 754, 850, 934, 1247
CviQI	GTAC	5 cut(s)	171, 604, 720, 1261, 1293
DdeI	CTNAG	5 cut(s)	363, 959, 1171, 1281, 1289
DpnI	GATC	5 cut(s)	17, 263, 384, 681, 819
DpnII	GATC	5 cut(s)	15, 261, 382, 679, 817
Eam1104I	CTCTTC	2 cut(s)	2, 1271
EarI	CTCTTC	2 cut(s)	2, 1271
Eco31I	GGTCTC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	800, 1061
EcoO109I	RGGNCCY	5 cut(s)	439, 622, 800, 901, 1061
EcoRII	CCWGG	4 cut(s)	108, 493, 802, 858
EcoRV	GATATC	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	9 cut(s)	434, 483, 512, 616, 747, 757, 853, 937, 1250
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	9 cut(s)	430, 479, 508, 612, 743, 753, 849, 933, 1246
FauI	CCCGC	1 cut(s)	1051
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	1190
FokI	GGATG	3 cut(s)	572, 822, 1223
Fsp4HI	GCNGC	1 cut(s)	1190
FspBI	CTAG	1 cut(s)	1199
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	1190
HaeIII	GGCC	4 cut(s)	441, 623, 695, 902
HapII	CCGG	3 cut(s)	294, 468, 696
HgaI	GACGC	3 cut(s)	473, 648, 777
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	465, 788
Hin1II	CATG	9 cut(s)	434, 483, 512, 616, 747, 757, 853, 937, 1250
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	43, 992, 1099, 1283
HpaII	CCGG	3 cut(s)	294, 468, 696
HphI	GGTGA	2 cut(s)	1247, 1261
Hpy166II	GTNNAC	2 cut(s)	36, 371
Hpy188I	TCNGA	5 cut(s)	42, 364, 382, 463, 960
Hpy188III	TCNNGA	8 cut(s)	127, 402, 509, 636, 821, 1029, 1071, 1247
Hpy8I	GTNNAC	2 cut(s)	36, 371
Hpy99I	CGWCG	1 cut(s)	793
HpyAV	CCTTC	3 cut(s)	430, 892, 1005
HpyCH4III	ACNGT	5 cut(s)	259, 572, 603, 869, 1253
HpyCH4V	TGCA	8 cut(s)	71, 77, 103, 178, 632, 797, 941, 1153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 629, 692, 794, 846
HpyF3I	CTNAG	5 cut(s)	363, 959, 1171, 1281, 1289
Hsp92I	GRCGYC	2 cut(s)	465, 788
Hsp92II	CATG	9 cut(s)	434, 483, 512, 616, 747, 757, 853, 937, 1250
HspAI	GCGC	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	15, 261, 382, 679, 817
LguI	GCTCTTC	1 cut(s)	2
Lsp1109I	GCAGC	1 cut(s)	1201
LweI	GCATC	6 cut(s)	268, 511, 594, 641, 891, 1201
MabI	ACCWGGT	2 cut(s)	493, 802
MaeI	CTAG	1 cut(s)	1199
MaeIII	GTNAC	4 cut(s)	572, 854, 1253, 1284
MalI	GATC	5 cut(s)	17, 263, 384, 681, 819
MboI	GATC	5 cut(s)	15, 261, 382, 679, 817
MboII	GAAGA	2 cut(s)	19, 1258
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	874, 1234
MlyI	GAGTC	1 cut(s)	1292
MmeI	TCCRAC	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	5 cut(s)	249, 408, 444, 1203, 1309
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	3 cut(s)	294, 468, 696
MspR9I	CCNGG	6 cut(s)	110, 469, 495, 697, 804, 860
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	4 cut(s)	110, 495, 804, 860
MwoI	GCNNNNNNNGC	5 cut(s)	100, 629, 692, 794, 846
NciI	CCSGG	2 cut(s)	469, 697
NdeII	GATC	5 cut(s)	15, 261, 382, 679, 817
NlaIII	CATG	9 cut(s)	434, 483, 512, 616, 747, 757, 853, 937, 1250
NlaIV	GGNNCC	3 cut(s)	605, 903, 1062
NmuCI	GTSAC	2 cut(s)	1253, 1284
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	483
PagI	TCATGA	2 cut(s)	508, 1246
PciI	ACATGT	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	43, 992, 1099
PflFI	GACNNNGTC	1 cut(s)	1282
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	1191
PleI	GAGTC	1 cut(s)	1291
PpsI	GAGTC	1 cut(s)	1291
PpuMI	RGGWCCY	2 cut(s)	800, 1061
PscI	ACATGT	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	249
Psp5II	RGGWCCY	2 cut(s)	800, 1061
Psp6I	CCWGG	4 cut(s)	108, 493, 802, 858
PspGI	CCWGG	4 cut(s)	108, 493, 802, 858
PspN4I	GGNNCC	3 cut(s)	605, 903, 1062
PspPI	GGNCC	6 cut(s)	439, 622, 693, 800, 901, 1061
PspPPI	RGGWCCY	2 cut(s)	800, 1061
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	1282
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	5 cut(s)	172, 605, 721, 1262, 1294
RsaNI	GTAC	5 cut(s)	171, 604, 720, 1261, 1293
RseI	CAYNNNNRTG	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	5 cut(s)	249, 408, 444, 1203, 1309
SatI	GCNGC	1 cut(s)	1190
Sau3AI	GATC	5 cut(s)	15, 261, 382, 679, 817
Sau96I	GGNCC	6 cut(s)	439, 622, 693, 800, 901, 1061
ScaI	AGTACT	1 cut(s)	1294
SchI	GAGTC	1 cut(s)	1292
ScrFI	CCNGG	6 cut(s)	110, 469, 495, 697, 804, 860
SduI	GDGCHC	2 cut(s)	874, 1234
SexAI	ACCWGGT	2 cut(s)	493, 802
SfaNI	GCATC	6 cut(s)	268, 511, 594, 641, 891, 1201
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	2 cut(s)	800, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	1198
SsiI	CCGC	1 cut(s)	1058
SspMI	CTAG	1 cut(s)	1199
StyD4I	CCNGG	6 cut(s)	108, 467, 493, 695, 802, 858
TaaI	ACNGT	5 cut(s)	259, 572, 603, 869, 1253
TaqI	TCGA	1 cut(s)	490
TatI	WGTACW	1 cut(s)	1292
TfiI	GAWTC	3 cut(s)	43, 992, 1099
Tru1I	TTAA	5 cut(s)	249, 408, 444, 1203, 1309
Tru9I	TTAA	5 cut(s)	249, 408, 444, 1203, 1309
TscAI	CASTG	1 cut(s)	1179
TseFI	GTSAC	2 cut(s)	1253, 1284
TseI	GCWGC	1 cut(s)	1189
Tsp45I	GTSAC	2 cut(s)	1253, 1284
TspDTI	ATGAA	3 cut(s)	267, 525, 911
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	1179
Tth111I	GACNNNGTC	1 cut(s)	1282
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	800, 1061
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	3 cut(s)	229, 358, 954
XceI	RCATGY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	995
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	1199
ZrmI	AGTACT	1 cut(s)	1294
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.