Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006739

Physical Location & Seq

Genomic Coordinates Forward (+)

48339980 .. 48342477

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0368500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGGATTACATGAGTGTGGTGATTCCAAGAAACTCTCGCATTCCCATCAAGAAGAAAAAGATCTTAGCAAATGCTGTTGACACAGTTCCCTTCCTTGTTTATGAGGGTGAGAGTAGAACAGCCAAACAAAATAACTTTTTAGGTAAGTTTTCACTTGATGGCATTCCTCCAGTTCCTAAATGTAAAGCCAAATTTTGCTTTGATATTGATGCAAATGGTATCTTGAATGTCTCTGCTGTGGACACGTCCACAGGCCAAAAGAAGGGGATTACAATCAACAGTGATAGAAGAAACTTTGAAGGCATTGAGAATGCGAGAGGAAAGATAGAGAGCTTTAGAGAGATGGTTGGCATCTTCCCTGACAGGGACGGGAACAGTCTTTGGAAATTCAGTGATACGTCTGTTCAAAGTGACAAGAAGCTCTGGCCATTCAAAGTGGTTGAAGGTCCTGATGATAAGCCTATTATTTTGGTTAAGCATGAAAGCAAAGAGAAACAGTGTGCTGCTGAAGATATCTCATCCATGGTTCTTGCAAAAATGCGGGAGATAGCTGAAGCCTATCTTGGATCAACTGTGAAAAATGCAGTGATCACAGTCCCTGCTTACTTCAATAATTCCCAGCGTGAGGCTACAAAAAAAGCTGGTATTACTGCAGGCCTAAATGTTATGCGTATCATTAATGAACCAACTGCAGCAGCCATTACTTATGGCCTTGACAAGAAGGCTGGTTGGTATAGCAAGAGAAACGTACTCATATTTGATTTGGGTGGGGGTACTTTGGATGTGTCACTACTTACAATAGGCGATGGTGTCTTTGAAGTGAAAGCCACTGCCGGAGATACTCATCTTGGAGGTGAGGACTTCGATACCAAAATGGTGAATTACTGTGTTGAGGAATTTAAGAGGAAGCACAATTTGGATGTCAGTGGAAACATCAGAACTTTTAGGAGGTTAAGAAATGCATGTGAAATGGCAAAGAGGAGACTTTCATTTACAACTACAACTGACATTGAAATTGAATGTTTGCATCAAGGTATTGATTTCTATGTGACTTTTACTCGTGCCAAATTTGAACAGCTCAACTTTGATTTCTTTAATAAGTGTATGGAGCCTGTGGAGAAGTGTTTGGAGGATGCCAAAATGGACATAGGTAGTGTCCATGATGTCGTTCTTGCTGGTGGCTCTTCTAGAATCCCCAAGGTGCAACAACTGCTACAGAATGTGTTCAAGGGGAAGGAGCTGTGCAAGAGCATAAATCCTGATGAGGCAATAGCATATGGTGCAGCTGTTCAAGCTGCAGTCTTGACAGGTGGGAACTTCCTTGGAAAACTTCAAGACTTCAGTCTCTTGGATGTCACCCCTCTCTCACTTGGAACGAATATTACTGATACCAGTGACCCTCACAACTTCAAGCAATACATGAGTGTGGTGATTCCAAGAAACTCTCGCATTCCCATCAAGAAGAAAGAGAAATTTGTAACTGTTTATGACAACCAAAAGTCAGTTGGCTTCCCTGTTTATGAGGGTGAGAGTAGAATACCCAAACAAAATAACCTATTAGGAGATTTTTCACTTGATGGCATTCCTCCACTTCCTAAAGGTAAAGCCAAATTTGATGTTTGCTTTGATATTGATTCAAATGGTATCTTGAGTGTCTCTGCTGAAGACATGTCCACATGCCAAAAGAAAGGGATTACAATCAACAGTGATAGAAGAACATTTGAAGGTATTGAGGACGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005975 GO:0008150 GO:0008152 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

581

Amino Acids

64.43

Weight (kDa)

8.43

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	3 - 97	2.8e-16	Hsp70 protein
HSP70	PF00012	129 - 571	1.5e-162	Hsp70 protein
MreB_Mbl	PF06723	191 - 429	1.8e-16	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56310 AT3G56310
fragaria_vesca	FvH4_7g25770 FvH4_7g25770 FvH4_7g25770
malus_domestica	MD01G1165300.v1.1 MD07G1232600.v1.1
prunus_persica	Prupe.2G262800_v2.0.a1
pyrus_communis	pycom01g17920
rosa_chinensis	RchiOBHm_Chr1g0372021
rosa_laevigata	RLG00000026927
rosa_multiflora	Rmu_sc0001755.1_g000035
rosa_roxburghii	Rroxscaffold_4G00285320
rosa_rugosa	Rorug01G0368400 Rorug01G0368500 Rorug01G0368600.1 Rorug01G0368700 Rorug01G0368800 Rorug01G0368900 Rorug01G0369000 Rorug01G0369100
rosa_samantha	Rh1AG377700 Rh1BG341100 Rh1CG354300 Rh1DG372100
rosa_wichuraiana	Rw1G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	6 cut(s)	191, 386, 896, 1067, 1472, 1610
AcuI	CTGAAG	4 cut(s)	528, 573, 1324, 1683
AfaI	GTAC	2 cut(s)	750, 775
AfiI	CCNNNNNNNGG	3 cut(s)	262, 364, 625
AflIII	ACRYGT	2 cut(s)	243, 1668
AjiI	CACGTC	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	4 cut(s)	546, 578, 899, 931
AluBI	AGCT	8 cut(s)	333, 421, 551, 641, 1078, 1240, 1286, 1295
AluI	AGCT	8 cut(s)	333, 421, 551, 641, 1078, 1240, 1286, 1295
Alw26I	GTCTC	4 cut(s)	235, 976, 1349, 1660
AlwI	GGATC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	4 cut(s)	253, 425, 655, 709
ApeKI	GCWGC	5 cut(s)	503, 692, 695, 1283, 1295
ApoI	RAATTY	6 cut(s)	191, 386, 896, 1067, 1472, 1610
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	1223
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	7 cut(s)	31, 119, 866, 889, 1348, 1441, 1538
AvaII	GGWCC	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BalI	TGGCCA	1 cut(s)	427
BauI	CACGAG	1 cut(s)	1059
BbsI	GAAGAC	1 cut(s)	1671
BbvI	GCAGC	5 cut(s)	490, 704, 707, 1282, 1295
BccI	CCATC	6 cut(s)	53, 152, 337, 800, 1463, 1571
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	4 cut(s)	235, 976, 1349, 1660
BfaI	CTAG	1 cut(s)	1188
BfmI	CTRYAG	4 cut(s)	651, 690, 1214, 1296
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	5 cut(s)	504, 693, 696, 1284, 1296
BlsI	GCNGC	5 cut(s)	505, 694, 697, 1285, 1297
Bme18I	GGWCC	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	1110
BmsI	GCATC	4 cut(s)	199, 360, 1036, 1123
BoxI	GACNNNNGTC	1 cut(s)	1341
BpiI	GAAGAC	1 cut(s)	1671
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	1669
BsaBI	GATNNNNATC	3 cut(s)	272, 843, 1697
BsaJI	CCNNGG	3 cut(s)	522, 1197, 1321
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 364, 625
Bse1I	ACTGG	2 cut(s)	170, 1392
Bse8I	GATNNNNATC	3 cut(s)	272, 843, 1697
BseDI	CCNNGG	3 cut(s)	522, 1197, 1321
BseGI	GGATG	5 cut(s)	518, 787, 925, 1138, 1357
BseJI	GATNNNNATC	3 cut(s)	272, 843, 1697
BseLI	CCNNNNNNNGG	3 cut(s)	262, 364, 625
BseNI	ACTGG	2 cut(s)	170, 1392
BseRI	GAGGAG	1 cut(s)	994
BseXI	GCAGC	5 cut(s)	490, 704, 707, 1282, 1295
BseYI	CCCAGC	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	1302
BshFI	GGCC	4 cut(s)	255, 427, 657, 711
BsiSI	CCGG	1 cut(s)	834
BslFI	GGGAC	2 cut(s)	380, 581
BslI	CCNNNNNNNGG	3 cut(s)	262, 364, 625
BsmAI	GTCTC	4 cut(s)	235, 976, 1349, 1660
BsmFI	GGGAC	2 cut(s)	380, 581
BsmI	GAATGC	5 cut(s)	39, 162, 316, 1449, 1581
BsnI	GGCC	4 cut(s)	255, 427, 657, 711
Bsp143I	GATC	3 cut(s)	60, 566, 588
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	4 cut(s)	255, 427, 657, 711
BspLI	GGNNCC	1 cut(s)	1110
BspMAI	CTGCAG	3 cut(s)	655, 694, 1300
BspPI	GGATC	1 cut(s)	574
BspQI	GCTCTTC	1 cut(s)	1189
BsrI	ACTGG	2 cut(s)	170, 1392
BssECI	CCNNGG	3 cut(s)	522, 1197, 1321
BssMI	GATC	3 cut(s)	60, 566, 588
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	3 cut(s)	522, 1197, 1321
Bst2BI	CACGAG	1 cut(s)	1059
Bst4CI	ACNGT	9 cut(s)	85, 281, 377, 498, 574, 595, 887, 1483, 1706
Bst6I	CTCTTC	1 cut(s)	1189
BstAPI	GCANNNNNTGC	2 cut(s)	1210, 1280
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	5 cut(s)	518, 787, 925, 1138, 1357
BstKTI	GATC	3 cut(s)	63, 569, 591
BstMAI	GTCTC	4 cut(s)	235, 976, 1349, 1660
BstMBI	GATC	3 cut(s)	60, 566, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	1210, 1280, 1292
BstNSI	RCATGY	3 cut(s)	966, 1672, 1680
BstPAI	GACNNNNGTC	1 cut(s)	1341
BstSFI	CTRYAG	4 cut(s)	651, 690, 1214, 1296
BstV1I	GCAGC	5 cut(s)	490, 704, 707, 1282, 1295
BstV2I	GAAGAC	1 cut(s)	1671
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	255, 427, 657, 711
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	5 cut(s)	518, 787, 925, 1138, 1357
BtsI	GCAGTG	2 cut(s)	591, 828
BtsIMutI	CAGTG	8 cut(s)	286, 397, 503, 591, 828, 931, 1399, 1711
Cac8I	GCNNGC	1 cut(s)	655
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	749, 774
CviAII	CATG	8 cut(s)	10, 479, 523, 963, 1160, 1420, 1669, 1677
CviQI	GTAC	2 cut(s)	749, 774
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	62, 568, 590
DpnII	GATC	3 cut(s)	60, 566, 588
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	1189
EarI	CTCTTC	1 cut(s)	1189
Eco130I	CCWWGG	3 cut(s)	522, 1197, 1321
Eco147I	AGGCCT	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	4 cut(s)	528, 573, 1324, 1683
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	3 cut(s)	522, 1197, 1321
EcoT22I	ATGCAT	1 cut(s)	964
ErhI	CCWWGG	3 cut(s)	522, 1197, 1321
FaeI	CATG	8 cut(s)	13, 482, 526, 966, 1163, 1423, 1672, 1680
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	2 cut(s)	380, 581
FatI	CATG	8 cut(s)	9, 478, 522, 962, 1159, 1419, 1668, 1676
FauI	CCCGC	1 cut(s)	534
FauNDI	CATATG	1 cut(s)	1276
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	5 cut(s)	504, 693, 696, 1284, 1296
FokI	GGATG	5 cut(s)	505, 794, 932, 1145, 1364
Fsp4HI	GCNGC	5 cut(s)	504, 693, 696, 1284, 1296
FspBI	CTAG	1 cut(s)	1188
GluI	GCNGC	5 cut(s)	504, 693, 696, 1284, 1296
GsaI	CCCAGC	1 cut(s)	622
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	255, 427, 657, 711
HapII	CCGG	1 cut(s)	834
Hin1II	CATG	8 cut(s)	13, 482, 526, 966, 1163, 1423, 1672, 1680
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	4 cut(s)	22, 1191, 1432, 1634
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	7 cut(s)	31, 119, 866, 889, 1348, 1441, 1538
Hpy166II	GTNNAC	4 cut(s)	79, 241, 249, 1674
Hpy188I	TCNGA	1 cut(s)	938
Hpy188III	TCNNGA	9 cut(s)	49, 223, 449, 1188, 1259, 1303, 1334, 1459, 1648
Hpy8I	GTNNAC	4 cut(s)	79, 241, 249, 1674
HpyAV	CCTTC	7 cut(s)	100, 256, 293, 437, 715, 1228, 1718
HpyCH4III	ACNGT	9 cut(s)	85, 281, 377, 498, 574, 595, 887, 1483, 1706
HpyCH4IV	ACGT	3 cut(s)	245, 398, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1210, 1280, 1292
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	3 cut(s)	245, 398, 747
Hsp92II	CATG	8 cut(s)	13, 482, 526, 966, 1163, 1423, 1672, 1680
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	60, 566, 588
LguI	GCTCTTC	1 cut(s)	1189
LmnI	GCTCC	2 cut(s)	1108, 1237
Lsp1109I	GCAGC	5 cut(s)	490, 704, 707, 1282, 1295
LweI	GCATC	4 cut(s)	199, 360, 1036, 1123
MaeI	CTAG	1 cut(s)	1188
MaeII	ACGT	3 cut(s)	245, 398, 747
MaeIII	GTNAC	6 cut(s)	410, 786, 1048, 1354, 1394, 1477
MalI	GATC	3 cut(s)	62, 568, 590
MboI	GATC	3 cut(s)	60, 566, 588
MboII	GAAGA	8 cut(s)	64, 300, 346, 521, 1176, 1474, 1676, 1725
MflI	RGATCY	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	427
MluNI	TGGCCA	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	427
Mph1103I	ATGCAT	1 cut(s)	964
MroXI	GAANNNNTTC	1 cut(s)	1223
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	5 cut(s)	474, 678, 900, 953, 1095
MslI	CAYNNNNRTG	2 cut(s)	14, 1424
Msp20I	TGGCCA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	1286
MspI	CCGG	1 cut(s)	834
Mva1269I	GAATGC	5 cut(s)	39, 162, 316, 1449, 1581
MwoI	GCNNNNNNNGC	3 cut(s)	1210, 1280, 1292
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	1276
NdeII	GATC	3 cut(s)	60, 566, 588
NlaIII	CATG	8 cut(s)	13, 482, 526, 966, 1163, 1423, 1672, 1680
NlaIV	GGNNCC	1 cut(s)	1110
NmuCI	GTSAC	5 cut(s)	410, 786, 1048, 1354, 1394
NsiI	ATGCAT	1 cut(s)	964
NspI	RCATGY	3 cut(s)	966, 1672, 1680
PceI	AGGCCT	1 cut(s)	657
PciI	ACATGT	1 cut(s)	1668
PciSI	GCTCTTC	1 cut(s)	1189
PctI	GAATGC	5 cut(s)	39, 162, 316, 1449, 1581
PdmI	GAANNNNTTC	1 cut(s)	1223
PfeI	GAWTC	4 cut(s)	22, 1191, 1432, 1634
PkrI	GCNGC	5 cut(s)	505, 694, 697, 1285, 1297
PpuMI	RGGWCCY	1 cut(s)	446
PscI	ACATGT	1 cut(s)	1668
PshAI	GACNNNNGTC	1 cut(s)	1341
PshBI	ATTAAT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	1110
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	1366, 1398
PstI	CTGCAG	3 cut(s)	655, 694, 1300
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	1286
RsaI	GTAC	2 cut(s)	750, 775
RsaNI	GTAC	2 cut(s)	749, 774
RseI	CAYNNNNRTG	2 cut(s)	14, 1424
SapI	GCTCTTC	1 cut(s)	1189
SaqAI	TTAA	5 cut(s)	474, 678, 900, 953, 1095
SatI	GCNGC	5 cut(s)	504, 693, 696, 1284, 1296
Sau3AI	GATC	3 cut(s)	60, 566, 588
Sau96I	GGNCC	1 cut(s)	446
SfaNI	GCATC	4 cut(s)	199, 360, 1036, 1123
SfcI	CTRYAG	4 cut(s)	651, 690, 1214, 1296
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	14, 1424
SmlI	CTYRAG	1 cut(s)	1648
SmoI	CTYRAG	1 cut(s)	1648
SseBI	AGGCCT	1 cut(s)	657
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	1381
SspMI	CTAG	1 cut(s)	1188
StuI	AGGCCT	1 cut(s)	657
StyI	CCWWGG	3 cut(s)	522, 1197, 1321
TaaI	ACNGT	9 cut(s)	85, 281, 377, 498, 574, 595, 887, 1483, 1706
TaiI	ACGT	3 cut(s)	248, 401, 750
TaqI	TCGA	1 cut(s)	864
TfiI	GAWTC	4 cut(s)	22, 1191, 1432, 1634
Tru1I	TTAA	5 cut(s)	474, 678, 900, 953, 1095
Tru9I	TTAA	5 cut(s)	474, 678, 900, 953, 1095
TscAI	CASTG	8 cut(s)	286, 397, 503, 591, 835, 931, 1399, 1711
TseFI	GTSAC	5 cut(s)	410, 786, 1048, 1354, 1394
TseI	GCWGC	5 cut(s)	503, 692, 695, 1283, 1295
Tsp45I	GTSAC	5 cut(s)	410, 786, 1048, 1354, 1394
TspDTI	ATGAA	3 cut(s)	495, 696, 978
TspRI	CASTG	8 cut(s)	286, 397, 503, 591, 835, 931, 1399, 1711
VpaK11BI	GGWCC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	6 cut(s)	191, 386, 896, 1067, 1472, 1610
XbaI	TCTAGA	1 cut(s)	1187
XceI	RCATGY	3 cut(s)	966, 1672, 1680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1502
XmnI	GAANNNNTTC	1 cut(s)	1223
XspI	CTAG	1 cut(s)	1188
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.