Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018800

Physical Location & Seq

Genomic Coordinates Forward (+)

27920174 .. 27922051

Gene Structure 1878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATTGCCATTGGGATGATGAACATTGCTGGTTCTTGCACTTCTTGTTACCTCACCACAGGGCCGTTTTCCATATCAGCAGTTAAATACAACGCAGGATGCAAGACGGCAATGTCAAACGTTGTCATGGCAATTGCGGTTATGTTCACATTGTTGTTCCTCACTCCTCTATTCCATTACACTCCCCTGAAGGTTGACACGTTTGACTTTGTTGTCTGCATGAGTGCCTATATCGGTGTCGTTTTTCACAGCGTTGAAATCGGCCTAGTCTTAGCGGTTGCAATATCTGTGATCAGGGTACTTTTGTTTGTGGCAAGGCCAAGGACTTTTGTTCAAGGAAACCTTCCGAATTCCATGGTTTACAGAAATGTTGAGCAGTATCCCAATGCAAGCAATGTTCATGGAATTCTCATACTTGAGATTGATGCTCCCATTTACTTTGCAAATACCAACTACTTAAGAAAAAGGATTACAAGGTGGATAAATGATGAGGAAGATAGGATCAAATCTGCAGGGGAAAGTAGCTTACAATGTGTGATATTGGATATAACTGCTGTTGGTAACATAGACACAAGTGGGATAAGCATGTTTGAAGAGGTCAAAAAGCTTGTTGACAGAAGGAGTTTCCAGCTTGTACTGGCGAACCCAGGAAGCGAGGTGATGAAGAAGATGAACAAGTCAGAGTTGATTGAGAAAACATGTCAAGAATGGATTTATCTCACAGTTGCAGAGGCTGTTGCAGCATGCAACTTCAGGCTTCACTCCACTAAGCCCAACCCTGGAAAATATCAAGAACCAGCTGCATGGAACAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009507 GO:0009536 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

273

Amino Acids

30.24

Weight (kDa)

8.11

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018800)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100
prunus_persica	Prupe.2G279100_v2.0.a1
pyrus_communis	pycom13g17190
rosa_multiflora	Rmu_co8339971.1_g000001
rosa_rugosa	Rorug06G0211400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	112, 212
AciI	CCGC	2 cut(s)	137, 275
AclI	AACGTT	2 cut(s)	120, 813
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	349, 405
AcuI	CTGAAG	2 cut(s)	209, 736
AfaI	GTAC	2 cut(s)	300, 636
AfiI	CCNNNNNNNGG	1 cut(s)	779
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	2 cut(s)	198, 698
AgsI	TTSAA	3 cut(s)	257, 335, 593
AjnI	CCWGG	2 cut(s)	646, 778
AluBI	AGCT	4 cut(s)	525, 607, 631, 800
AluI	AGCT	4 cut(s)	525, 607, 631, 800
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	62, 262, 317
ApeKI	GCWGC	2 cut(s)	740, 800
ApoI	RAATTY	2 cut(s)	349, 405
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	46, 670
BaeI	ACNNNNGTAYC	2 cut(s)	290, 323
BbvI	GCAGC	2 cut(s)	752, 787
BceAI	ACGGC	2 cut(s)	49, 123
BciT130I	CCWGG	2 cut(s)	648, 780
BciVI	GTATCC	1 cut(s)	390
BclI	TGATCA	1 cut(s)	291
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	2 cut(s)	741, 801
BlsI	GCNGC	2 cut(s)	742, 802
Bme1390I	CCNGG	2 cut(s)	648, 780
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	2 cut(s)	648, 780
BmsI	GCATC	2 cut(s)	89, 415
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	320, 354, 646, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	3 cut(s)	24, 117, 400
BseBI	CCWGG	2 cut(s)	648, 780
BseDI	CCNNGG	4 cut(s)	320, 354, 646, 778
BseGI	GGATG	2 cut(s)	21, 104
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMI	GCAATG	3 cut(s)	24, 117, 400
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	752, 787
BshFI	GGCC	3 cut(s)	64, 264, 319
BslI	CCNNNNNNNGG	1 cut(s)	779
BsnI	GGCC	3 cut(s)	64, 264, 319
Bsp143I	GATC	2 cut(s)	291, 501
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	2 cut(s)	137, 275
BspANI	GGCC	3 cut(s)	64, 264, 319
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	457
BsrDI	GCAATG	3 cut(s)	24, 117, 400
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	4 cut(s)	320, 354, 646, 778
BssMI	GATC	2 cut(s)	291, 501
BssT1I	CCWWGG	2 cut(s)	320, 354
Bst2UI	CCWGG	2 cut(s)	648, 780
Bst4CI	ACNGT	1 cut(s)	724
Bst6I	CTCTTC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	391, 745
BstDEI	CTNAG	2 cut(s)	271, 768
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	21, 104
BstKTI	GATC	2 cut(s)	294, 504
BstMBI	GATC	2 cut(s)	291, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	2 cut(s)	648, 780
BstNSI	RCATGY	3 cut(s)	589, 702, 747
BstSCI	CCNGG	2 cut(s)	646, 778
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	752, 787
BstXI	CCANNNNNNTGG	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	64, 264, 319
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	21, 104
Cac8I	GCNNGC	2 cut(s)	391, 745
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	299, 635
CviAII	CATG	8 cut(s)	127, 220, 355, 401, 586, 699, 744, 804
CviQI	GTAC	2 cut(s)	299, 635
DdeI	CTNAG	2 cut(s)	271, 768
DpnI	GATC	2 cut(s)	293, 503
DpnII	GATC	2 cut(s)	291, 501
DrdI	GACNNNNNNGTC	2 cut(s)	112, 212
DseDI	GACNNNNNNGTC	2 cut(s)	112, 212
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	320, 354
Eco57I	CTGAAG	2 cut(s)	209, 736
EcoRI	GAATTC	2 cut(s)	349, 405
EcoRII	CCWGG	2 cut(s)	646, 778
EcoT14I	CCWWGG	2 cut(s)	320, 354
ErhI	CCWWGG	2 cut(s)	320, 354
FaeI	CATG	8 cut(s)	130, 223, 358, 404, 589, 702, 747, 807
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	8 cut(s)	126, 219, 354, 400, 585, 698, 743, 803
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	741, 801
FokI	GGATG	2 cut(s)	28, 111
Fsp4HI	GCNGC	2 cut(s)	741, 801
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	741, 801
HaeIII	GGCC	3 cut(s)	64, 264, 319
Hin1II	CATG	8 cut(s)	130, 223, 358, 404, 589, 702, 747, 807
HincII	GTYRAC	2 cut(s)	196, 613
HindII	GTYRAC	2 cut(s)	196, 613
HindIII	AAGCTT	1 cut(s)	605
HphI	GGTGA	2 cut(s)	46, 670
Hpy166II	GTNNAC	4 cut(s)	147, 196, 361, 613
Hpy188I	TCNGA	2 cut(s)	348, 682
Hpy188III	TCNNGA	2 cut(s)	704, 791
Hpy8I	GTNNAC	4 cut(s)	147, 196, 361, 613
HpyAV	CCTTC	3 cut(s)	184, 353, 612
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4IV	ACGT	3 cut(s)	120, 200, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	2 cut(s)	271, 768
HpySE526I	ACGT	3 cut(s)	120, 200, 813
Hsp92II	CATG	8 cut(s)	130, 223, 358, 404, 589, 702, 747, 807
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	291, 501
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	752, 787
LweI	GCATC	2 cut(s)	89, 415
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	3 cut(s)	120, 200, 813
MaeIII	GTNAC	2 cut(s)	47, 560
MalI	GATC	2 cut(s)	293, 503
MboI	GATC	2 cut(s)	291, 501
MboII	GAAGA	4 cut(s)	506, 605, 676, 679
MfeI	CAATTG	1 cut(s)	132
MluCI	AATT	3 cut(s)	132, 349, 405
MnlI	CCTC	7 cut(s)	62, 170, 177, 484, 589, 649, 724
MseI	TTAA	2 cut(s)	84, 458
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	800
MspCI	CTTAAG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	648, 780
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	648, 780
MwoI	GCNNNNNNNGC	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	291, 501
NlaIII	CATG	8 cut(s)	130, 223, 358, 404, 589, 702, 747, 807
NspI	RCATGY	3 cut(s)	589, 702, 747
PaeI	GCATGC	1 cut(s)	747
PciI	ACATGT	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	742, 802
PscI	ACATGT	1 cut(s)	698
Psp1406I	AACGTT	2 cut(s)	120, 813
Psp6I	CCWGG	2 cut(s)	646, 778
PspGI	CCWGG	2 cut(s)	646, 778
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	734
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	300, 636
RsaNI	GTAC	2 cut(s)	299, 635
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	84, 458
SatI	GCNGC	2 cut(s)	741, 801
Sau3AI	GATC	2 cut(s)	291, 501
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	648, 780
SfaNI	GCATC	2 cut(s)	89, 415
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	416, 457
SmoI	CTYRAG	2 cut(s)	416, 457
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	3 cut(s)	132, 349, 405
SsiI	CCGC	2 cut(s)	137, 275
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	646, 778
StyI	CCWWGG	2 cut(s)	320, 354
TaaI	ACNGT	1 cut(s)	724
TaiI	ACGT	3 cut(s)	123, 203, 816
TasI	AATT	3 cut(s)	132, 349, 405
TatI	WGTACW	1 cut(s)	634
Tru1I	TTAA	2 cut(s)	84, 458
Tru9I	TTAA	2 cut(s)	84, 458
TseI	GCWGC	2 cut(s)	740, 800
TspDTI	ATGAA	4 cut(s)	35, 389, 677, 686
Vha464I	CTTAAG	1 cut(s)	457
XapI	RAATTY	2 cut(s)	349, 405
XceI	RCATGY	3 cut(s)	589, 702, 747
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.