Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339971.1

Orthogroup ID

OG0018800

Physical Location & Seq

Genomic Coordinates Reverse (-)

50 .. 996

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339971.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggtggtgattatacaggaaggaatagctgttggaagaagttttgccacagtcaagaactatcacatcgatggaaacaaagaaatgatcgcttttggattgatgaacattataggctctttcttttcttgcttcttgtcggcaggaccattttcgagaagtgcggtgaacttcaatgccggatgcaaaactcaagtctccaacatagtcatggcgtttattatgatgctgacactgctatttatgacaccattgttccagtatacaccaaatgtggtcctctgttccattataatgatggccatgatcggcatcatggacgtcccagccgccatccacctctggaaggtagataagatcgactgtatgatatgcctgggtgcatttttgggtgttagctttggcagtgttgagattggcttatccattgcggtcgtaatttcattgctaagactgatcctgttcatagcgagacccaggactctcaatttaggcaaccttccaaacacatcgacttatagaagcattgatcaatacacagctgcaaagaatgttccaggagttctcattcttcagatcgattcacccatctactttgccaattctaactatttgagggaaaggatctcaaggtgggtatatgaagaggaagacaggataaaatcttctggagaaacaagcttacaatacattatactagacattagcagtaagtatgaagctgcagcagtctcaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009507 GO:0009536 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

246

Amino Acids

27.2

Weight (kDa)

7.6

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018800)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100 FvH4_2g23100
prunus_persica	Prupe.2G279100_v2.0.a1
pyrus_communis	pycom13g17190
rosa_multiflora	Rmu_co8339971.1_g000001
rosa_rugosa	Rorug06G0211400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	263
AciI	CCGC	3 cut(s)	164, 330, 431
AclWI	GGATC	2 cut(s)	451, 632
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	557
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	375, 476, 556
AluBI	AGCT	5 cut(s)	29, 399, 542, 681, 722
AluI	AGCT	5 cut(s)	29, 399, 542, 681, 722
Alw26I	GTCTC	3 cut(s)	202, 466, 736
AlwI	GGATC	2 cut(s)	451, 632
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	542, 722, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AspS9I	GGNCC	2 cut(s)	146, 277
AsuHPI	GGTGA	3 cut(s)	19, 178, 576
AvaII	GGWCC	2 cut(s)	146, 277
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	3 cut(s)	529, 709, 737
BccI	CCATC	4 cut(s)	65, 292, 341, 596
BciT130I	CCWGG	3 cut(s)	377, 478, 558
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	3 cut(s)	202, 466, 736
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	4 cut(s)	330, 543, 723, 726
BlsI	GCNGC	4 cut(s)	331, 544, 724, 727
Bme1390I	CCNGG	3 cut(s)	377, 478, 558
Bme18I	GGWCC	2 cut(s)	146, 277
BmgT120I	GGNCC	2 cut(s)	146, 277
BmrFI	CCNGG	3 cut(s)	377, 478, 558
BmsI	GCATC	3 cut(s)	173, 216, 321
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	177, 613
Bsa29I	ATCGAT	2 cut(s)	69, 579
BsaBI	GATNNNNATC	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	2 cut(s)	376, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	2 cut(s)	426, 443
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	377, 478, 558
BseCI	ATCGAT	2 cut(s)	69, 579
BseDI	CCNNGG	2 cut(s)	376, 476
BseGI	GGATG	2 cut(s)	188, 333
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	426, 443
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	529, 709, 737
BseYI	CCCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	302
BshVI	ATCGAT	2 cut(s)	69, 579
BsiEI	CGRYCG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	3 cut(s)	202, 466, 736
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
BspACI	CCGC	3 cut(s)	164, 330, 431
BspANI	GGCC	1 cut(s)	302
BspDI	ATCGAT	2 cut(s)	69, 579
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	451, 632
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	2 cut(s)	426, 443
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	376, 476
BssMI	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
BssNAI	GTATAC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	321
Bst1107I	GTATAC	1 cut(s)	264
Bst2UI	CCWGG	3 cut(s)	377, 478, 558
Bst4CI	ACNGT	2 cut(s)	52, 365
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	188, 333
BstKTI	GATC	7 cut(s)	90, 309, 360, 459, 532, 579, 627
BstMAI	GTCTC	3 cut(s)	202, 466, 736
BstMBI	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	3 cut(s)	377, 478, 558
BstSCI	CCNGG	3 cut(s)	375, 476, 556
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	529, 709, 737
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BstZ17I	GTATAC	1 cut(s)	264
Bsu15I	ATCGAT	2 cut(s)	69, 579
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	2 cut(s)	69, 579
BtsCI	GGATG	2 cut(s)	188, 333
BtsI	GCAGTG	2 cut(s)	233, 412
BtsIMutI	CAGTG	2 cut(s)	233, 412
Cfr13I	GGNCC	2 cut(s)	146, 277
ClaI	ATCGAT	2 cut(s)	69, 579
CviAII	CATG	3 cut(s)	211, 304, 316
CviJI	RGCY	9 cut(s)	29, 117, 302, 329, 399, 420, 542, 681, 722
CviKI_1	RGCY	9 cut(s)	29, 117, 302, 329, 399, 420, 542, 681, 722
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	7 cut(s)	89, 308, 359, 458, 531, 578, 626
DpnII	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	146, 277
Eco57I	CTGAAG	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoRII	CCWGG	3 cut(s)	375, 476, 556
FaeI	CATG	3 cut(s)	214, 307, 319
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	210, 303, 315
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	330, 543, 723, 726
FokI	GGATG	2 cut(s)	195, 320
Fsp4HI	GCNGC	4 cut(s)	330, 543, 723, 726
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	4 cut(s)	330, 543, 723, 726
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	214, 307, 319
HindIII	AAGCTT	1 cut(s)	679
HinfI	GANTC	2 cut(s)	481, 581
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	19, 178, 576
Hpy166II	GTNNAC	2 cut(s)	169, 264
Hpy188I	TCNGA	1 cut(s)	576
Hpy188III	TCNNGA	4 cut(s)	55, 156, 343, 669
Hpy8I	GTNNAC	2 cut(s)	169, 264
HpyAV	CCTTC	3 cut(s)	14, 340, 509
HpyCH4III	ACNGT	2 cut(s)	52, 365
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	186, 383, 545, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	214, 307, 319
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
Lsp1109I	GCAGC	3 cut(s)	529, 709, 737
LweI	GCATC	3 cut(s)	173, 216, 321
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	321
MalI	GATC	7 cut(s)	89, 308, 359, 458, 531, 578, 626
MboI	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
MboII	GAAGA	5 cut(s)	48, 563, 656, 657, 662
MflI	RGATCY	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	4 cut(s)	438, 487, 601, 736
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	13, 225
MnlI	CCTC	4 cut(s)	290, 350, 609, 640
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	739
MslI	CAYNNNNRTG	3 cut(s)	69, 209, 293
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	377, 478, 558
MvaI	CCWGG	3 cut(s)	377, 478, 558
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
NlaIII	CATG	3 cut(s)	214, 307, 319
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	331, 544, 724, 727
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	375, 476, 556
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	3 cut(s)	375, 476, 556
PspPI	GGNCC	2 cut(s)	146, 277
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	542
RseI	CAYNNNNRTG	3 cut(s)	69, 209, 293
SaqAI	TTAA	1 cut(s)	739
SatI	GCNGC	4 cut(s)	330, 543, 723, 726
Sau3AI	GATC	7 cut(s)	87, 306, 357, 456, 529, 576, 624
Sau96I	GGNCC	2 cut(s)	146, 277
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	377, 478, 558
SfaNI	GCATC	3 cut(s)	173, 216, 321
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	146, 277
SmiMI	CAYNNNNRTG	3 cut(s)	69, 209, 293
SmlI	CTYRAG	2 cut(s)	192, 628
SmoI	CTYRAG	2 cut(s)	192, 628
Sse9I	AATT	4 cut(s)	438, 487, 601, 736
SsiI	CCGC	3 cut(s)	164, 330, 431
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	375, 476, 556
TaaI	ACNGT	2 cut(s)	52, 365
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	5 cut(s)	69, 155, 360, 512, 579
TasI	AATT	4 cut(s)	438, 487, 601, 736
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	739
Tru9I	TTAA	1 cut(s)	739
TscAI	CASTG	2 cut(s)	240, 412
TseI	GCWGC	3 cut(s)	542, 722, 725
TspDTI	ATGAA	5 cut(s)	119, 432, 454, 657, 732
TspRI	CASTG	2 cut(s)	240, 412
VpaK11BI	GGWCC	2 cut(s)	146, 277
XagI	CCTNNNNNAGG	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	2 cut(s)	208, 295
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	1 cut(s)	698
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.