Rorug06G0211400

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011704
Physical Location & Seq
Forward (+)
33600970 .. 33605266
4297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0211400.1

Sequence Viewer

Length: 738 bp
ATGGATTCCAACAGCCACAGCTTCACCTCACCCACCTCCTCAAACGACATTGAGCAGATGCCGGAGACCCCCCACCGCGGTGGGTCCTACCACCGCCGCGCTCACTCCGACTTCTCCTCCTTCCGCCTCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCCTTCCCCTCCCCCTCCCCCTCTCCCGTCCCCCCGCCACGTGGCACCACCACCACCCCCGCCAACTCCGCCGTCGTCCCCATGCCGATCGACTCCGACGACTCCTCCGCCTCCCGCCCCAGGCCCAGCGCCGCCGCCGCGCATTTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTCGCGCTCGCCGGAGACGCCGGCGGGAAGGAAGTCGTTGGGGGTAAGAGGGCCGGCGGCGGCCACCACAGGCACAGCAACTCCATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCTGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCTGCTGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGCGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGGCCTTATATCTTCAGGCTTCTTGGATATGGTGGAAAGTTTGTTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

245

Amino Acids

26.64

Weight (kDa)

6.71

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 179 - 229 4e-07 Basic region leucine zipper
bZIP_1 PF00170 181 - 229 8.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63270
fragaria_vesca FvH4_2g23101
malus_domestica MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis pycom03g20770
rosa_chinensis RchiOBHm_Chr6g0290271
rosa_laevigata RLG00000012229
rosa_multiflora Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii Rroxscaffold_7G00177190
rosa_rugosa Rorug06G0211400
rosa_samantha Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 342
AccII CGCG 4 cut(s) 78, 99, 320, 368
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 2 cut(s) 626, 683
AcvI CACGTG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 381
AfiI CCNNNNNNNGG 4 cut(s) 77, 221, 300, 594
AjnI CCWGG 1 cut(s) 299
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 7 cut(s) 21, 472, 514, 523, 548, 563, 619
AluI AGCT 7 cut(s) 21, 472, 514, 523, 548, 563, 619
Alw21I GWGCWC 2 cut(s) 474, 525
Alw26I GTCTC 2 cut(s) 59, 372
AlwI GGATC 1 cut(s) 563
AoxI GGCC 5 cut(s) 302, 361, 414, 424, 687
ApeKI GCWGC 2 cut(s) 330, 578
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 4 cut(s) 101, 311, 322, 370
AspS9I GGNCC 4 cut(s) 84, 303, 414, 585
AsuHPI GGTGA 3 cut(s) 16, 21, 613
AvaII GGWCC 2 cut(s) 84, 585
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 3 cut(s) 474, 489, 525
BbrPI CACGTG 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 474, 525
BbvI GCAGC 2 cut(s) 342, 565
BccI CCATC 1 cut(s) 476
BceAI ACGGC 3 cut(s) 236, 376, 469
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 59, 372
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 8 cut(s) 97, 312, 315, 318, 331, 421, 424, 579
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 8 cut(s) 98, 313, 316, 319, 332, 422, 425, 580
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 2 cut(s) 84, 585
BmgT120I GGNCC 4 cut(s) 84, 303, 414, 585
BmiI GGNNCC 3 cut(s) 85, 226, 457
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 641
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 76, 299, 447, 588
BsaXI ACNNNNNCTCC 8 cut(s) 101, 131, 164, 194, 269, 299, 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 221, 300, 594
Bse118I RCCGGY 2 cut(s) 383, 416
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 4 cut(s) 76, 299, 447, 588
BseLI CCNNNNNNNGG 4 cut(s) 77, 221, 300, 594
BseMII CTCAG 2 cut(s) 459, 510
BseRI GAGGAG 6 cut(s) 28, 106, 137, 140, 169, 274
BseXI GCAGC 2 cut(s) 342, 565
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 4 cut(s) 78, 99, 320, 368
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 5 cut(s) 304, 363, 416, 426, 689
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 2 cut(s) 474, 525
BsiSI CCGG 4 cut(s) 62, 375, 384, 417
BslFI GGGAC 2 cut(s) 194, 242
BslI CCNNNNNNNGG 4 cut(s) 77, 221, 300, 594
BsmAI GTCTC 2 cut(s) 59, 372
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 194, 242
BsnI GGCC 5 cut(s) 304, 363, 416, 426, 689
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 474, 489, 525
Bsp143I GATC 2 cut(s) 267, 555
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp19I CCATGG 1 cut(s) 447
BspANI GGCC 5 cut(s) 304, 363, 416, 426, 689
BspCNI CTCAG 2 cut(s) 460, 511
BspFNI CGCG 4 cut(s) 78, 99, 320, 368
BspLI GGNNCC 3 cut(s) 85, 226, 457
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 625
BsrFI RCCGGY 2 cut(s) 383, 416
BssAI RCCGGY 2 cut(s) 383, 416
BssECI CCNNGG 4 cut(s) 76, 299, 447, 588
BssMI GATC 2 cut(s) 267, 555
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 447, 588
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 381
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 372, 385, 418, 516
BstDEI CTNAG 4 cut(s) 468, 519, 540, 559
BstDSI CCRYGG 2 cut(s) 76, 447
BstFNI CGCG 4 cut(s) 78, 99, 320, 368
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 4 cut(s) 101, 311, 322, 370
BstKTI GATC 2 cut(s) 270, 558
BstMAI GTCTC 2 cut(s) 59, 372
BstMBI GATC 2 cut(s) 267, 555
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 5 cut(s) 248, 317, 380, 520, 631
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 4 cut(s) 78, 99, 320, 368
BstV1I GCAGC 2 cut(s) 342, 565
BstX2I RGATCY 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 80
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 5 cut(s) 304, 363, 416, 426, 689
BtgI CCRYGG 2 cut(s) 76, 447
BtsIMutI CAGTG 1 cut(s) 677
Cac8I GCNNGC 4 cut(s) 372, 385, 418, 516
CfoI GCGC 4 cut(s) 101, 311, 322, 370
Cfr10I RCCGGY 2 cut(s) 383, 416
Cfr13I GGNCC 4 cut(s) 84, 303, 414, 585
Cfr42I CCGCGG 1 cut(s) 79
CseI GACGC 2 cut(s) 389, 646
CviAII CATG 2 cut(s) 262, 448
DdeI CTNAG 4 cut(s) 468, 519, 540, 559
DpnI GATC 2 cut(s) 269, 557
DpnII GATC 2 cut(s) 267, 555
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 3 cut(s) 113, 238, 277
Ecl136II GAGCTC 2 cut(s) 472, 523
Eco130I CCWWGG 2 cut(s) 447, 588
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 3 cut(s) 474, 489, 525
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 84, 585
Eco53kI GAGCTC 2 cut(s) 472, 523
Eco57I CTGAAG 2 cut(s) 626, 683
Eco72I CACGTG 1 cut(s) 221
EcoICRI GAGCTC 2 cut(s) 472, 523
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 2 cut(s) 447, 588
EcoT38I GRGCYC 3 cut(s) 474, 489, 525
ErhI CCWWGG 2 cut(s) 447, 588
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 2 cut(s) 265, 451
FaiI YATR 7 cut(s) 263, 449, 500, 609, 694, 715, 736
FaqI GGGAC 2 cut(s) 194, 242
FatI CATG 2 cut(s) 261, 447
FauI CCCGC 4 cut(s) 222, 247, 302, 380
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 8 cut(s) 97, 312, 315, 318, 331, 421, 424, 579
FriOI GRGCYC 3 cut(s) 474, 489, 525
Fsp4HI GCNGC 8 cut(s) 97, 312, 315, 318, 331, 421, 424, 579
GlaI GCGC 4 cut(s) 100, 310, 321, 369
GluI GCNGC 8 cut(s) 97, 312, 315, 318, 331, 421, 424, 579
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 5 cut(s) 304, 363, 416, 426, 689
HapII CCGG 4 cut(s) 62, 375, 384, 417
HgaI GACGC 2 cut(s) 389, 646
HhaI GCGC 4 cut(s) 101, 311, 322, 370
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 2 cut(s) 265, 451
Hin6I GCGC 4 cut(s) 99, 309, 320, 368
HinP1I GCGC 4 cut(s) 99, 309, 320, 368
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 5 cut(s) 5, 272, 281, 344, 464
HpaII CCGG 4 cut(s) 62, 375, 384, 417
HphI GGTGA 3 cut(s) 16, 21, 613
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 7 cut(s) 109, 166, 277, 349, 469, 531, 645
Hpy188III TCNNGA 3 cut(s) 479, 490, 506
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 5 cut(s) 143, 257, 281, 344, 362
HpyAV CCTTC 6 cut(s) 130, 171, 193, 385, 592, 622
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 611, 634
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 317, 380, 520, 631
HpyF3I CTNAG 4 cut(s) 468, 519, 540, 559
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 2 cut(s) 265, 451
HspAI GCGC 4 cut(s) 99, 309, 320, 368
KroI GCCGGC 2 cut(s) 383, 416
KroNI GCCGGC 2 cut(s) 385, 418
KspI CCGCGG 1 cut(s) 79
Kzo9I GATC 2 cut(s) 267, 555
LmnI GCTCC 2 cut(s) 461, 622
Lsp1109I GCAGC 2 cut(s) 342, 565
LweI GCATC 1 cut(s) 48
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 673, 681
MalI GATC 2 cut(s) 269, 557
MbiI CCGCTC 1 cut(s) 625
MboI GATC 2 cut(s) 267, 555
MboII GAAGA 3 cut(s) 145, 346, 689
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 3 cut(s) 474, 489, 525
MlyI GAGTC 3 cut(s) 266, 275, 338
MmeI TCCRAC 5 cut(s) 33, 132, 189, 300, 372
MreI CGCCGGCG 1 cut(s) 383
MroNI GCCGGC 2 cut(s) 383, 416
MslI CAYNNNNRTG 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 4 cut(s) 62, 375, 384, 417
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 4 cut(s) 78, 99, 320, 368
MwoI GCNNNNNNNGC 5 cut(s) 248, 317, 380, 520, 631
NaeI GCCGGC 2 cut(s) 385, 418
NcoI CCATGG 1 cut(s) 447
NdeII GATC 2 cut(s) 267, 555
NgoMIV GCCGGC 2 cut(s) 383, 416
NlaIII CATG 2 cut(s) 265, 451
NlaIV GGNNCC 3 cut(s) 85, 226, 457
NmuCI GTSAC 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 78
PceI AGGCCT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 276
PdiI GCCGGC 2 cut(s) 385, 418
PfeI GAWTC 2 cut(s) 5, 464
PkrI GCNGC 8 cut(s) 98, 313, 316, 319, 332, 422, 425, 580
Ple19I CGATCG 1 cut(s) 270
PleI GAGTC 3 cut(s) 266, 275, 338
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
PpsI GAGTC 3 cut(s) 266, 275, 338
Ppu21I YACGTR 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 2 cut(s) 474, 525
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 299
PspCI CACGTG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 85, 226, 457
PspPI GGNCC 4 cut(s) 84, 303, 414, 585
PspPPI RGGWCCY 1 cut(s) 84
PsuI RGATCY 1 cut(s) 555
PvuI CGATCG 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 78
SacI GAGCTC 2 cut(s) 474, 525
SacII CCGCGG 1 cut(s) 79
SalI GTCGAC 1 cut(s) 341
SatI GCNGC 8 cut(s) 97, 312, 315, 318, 331, 421, 424, 579
Sau3AI GATC 2 cut(s) 267, 555
Sau96I GGNCC 4 cut(s) 84, 303, 414, 585
SchI GAGTC 3 cut(s) 266, 275, 338
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 3 cut(s) 474, 489, 525
SfaNI GCATC 1 cut(s) 48
Sfr303I CCGCGG 1 cut(s) 79
SgrAI CRCCGGYG 1 cut(s) 383
SgrBI CCGCGG 1 cut(s) 79
SinI GGWCC 2 cut(s) 84, 585
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SseBI AGGCCT 1 cut(s) 689
SstI GAGCTC 2 cut(s) 474, 525
StuI AGGCCT 1 cut(s) 689
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 447, 588
TaaI ACNGT 1 cut(s) 681
TaiI ACGT 1 cut(s) 223
TaqI TCGA 7 cut(s) 138, 156, 171, 270, 342, 357, 480
TauI GCSGC 6 cut(s) 99, 314, 317, 320, 423, 426
TfiI GAWTC 2 cut(s) 5, 464
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 2 cut(s) 330, 578
Tsp45I GTSAC 1 cut(s) 673
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 684
VpaK11BI GGWCC 2 cut(s) 84, 585
XmiI GTMKAC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.