AT3G63270

nuclease HARBI1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
23375584 .. 23377661
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63270.1

Sequence Viewer

Length: 1191 bp
ATGGCTCCGGTGAAGCAGAAGAAGAAGAATAAGAAGAAGCCTCTGGATAAGGCGAAGAAGTTGGCGAAGAATAAAGAGAAGAAGAGAGTCAACGCAGTGCCATTGGATCCGGAGGCTATCGACTGCGACTGGTGGGATACTTTCTGGCTCCGAAACTCTTCTCCCTCAGTCCCCTCAGACGAAGACTATGCGTTCAAGCACTTCTTTAGGGCTTCTAAGACAACTTTTAGCTACATTTGCTCGCTCGTCAGGGAGGACCTTATCTCTAGACCTCCCTCTGGTCTCATCAACATCGAGGGAAGGCTTCTTAGTGTTGAGAAACAAGTCGCCATTGCTCTTCGAAGGTTAGCTTCCGGTGATTCTCAGGTCTCCGTTGGTGCTGCCTTTGGTGTTGGCCAGTCCACTGTTTCTCAGGTTACATGGAGATTCATCGAGGCACTCGAAGAACGTGCCAAGCATCATCTTAGATGGCCAGATTCTGACCGAATTGAAGAGATCAAGTCAAAGTTCGAGGAGATGTACGGTCTCCCCAATTGCTGCGGAGCCATTGACACTACGCACATCATCATGACTCTCCCGGCTGTGCAAGCATCAGATGACTGGTGTGACCAGGAGAAGAACTACAGCATGTTCTTACAAGGAGTCTTTGATCACGAGATGAGATTTCTCAACATGGTTACCGGCTGGCCTGGCGGCATGACCGTCTCCAAGCTTCTCAAGTTCTCTGGCTTCTTCAAACTCTGTGAAAACGCTCAGATTTTAGACGGCAATCCTAAAACTCTATCCCAAGGAGCCCAGATTAGAGAATACGTTGTTGGAGGGATCAGTTACCCGCTTCTTCCCTGGCTTATAACTCCTCACGACAGCGATCATCCCTCTGATTCCATGGTGGCGTTCAACGAAAGGCATGAGAAGGTGAGGTCAGTCGCAGCTACTGCCTTTCAACAGCTTAAAGGAAGCTGGAGGATTCTGAGCAAAGTTATGTGGAGACCAGACAGGAGGAAGCTACCTAGTATAATACTGGTGTGTTGTTTGTTGCATAACATCATTATCGACTGTGGGGATTATCTTCAAGAAGATGTTCCTTTGTCTGGTCATCACGACTCCGGTTATGCAGACCGGTACTGCAAGCAGACCGAGCCGCTTGGTAGTGAGCTCAGAGGATGTCTGACTGAGCATTTGCTTAGGTGA

Protein Analysis

396

Amino Acids

44.97

Weight (kDa)

8.39

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 155 - 352 5.2e-06 Plant transposon protein
DDE_Tnp_4 PF13359 183 - 348 7e-19 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011704)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 4 cut(s) 540, 693, 833, 1142
AclWI GGATC 3 cut(s) 101, 114, 830
AcoI YGGCCR 2 cut(s) 394, 470
AfaI GTAC 2 cut(s) 521, 1124
AfiI CCNNNNNNNGG 2 cut(s) 278, 1091
AgeI ACCGGT 1 cut(s) 1119
AgsI TTSAA 6 cut(s) 196, 491, 736, 898, 944, 1073
AjnI CCWGG 3 cut(s) 609, 688, 842
AjuI GAANNNNNNNTTGG 2 cut(s) 798, 830
AluBI AGCT 8 cut(s) 231, 350, 712, 932, 949, 960, 1006, 1156
AluI AGCT 8 cut(s) 231, 350, 712, 932, 949, 960, 1006, 1156
Alw21I GWGCWC 1 cut(s) 1158
Alw26I GTCTC 5 cut(s) 287, 373, 530, 709, 982
AlwI GGATC 3 cut(s) 101, 114, 830
AlwNI CAGNNNCTG 2 cut(s) 479, 935
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 3 cut(s) 394, 470, 686
ApeKI GCWGC 3 cut(s) 380, 537, 929
ArsI GACNNNNNNTTYG 1 cut(s) 1162
AsiGI ACCGGT 1 cut(s) 1119
Asp700I GAANNNNTTC 2 cut(s) 157, 1080
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 3 cut(s) 22, 368, 928
AsuII TTCGAA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 256
BalI TGGCCA 2 cut(s) 396, 472
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 796, 1158
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 1158
BbvI GCAGC 3 cut(s) 367, 524, 941
BccI CCATC 1 cut(s) 462
BceAI ACGGC 1 cut(s) 781
BcgI CGANNNNNNTGC 4 cut(s) 170, 204, 431, 465
BciT130I CCWGG 3 cut(s) 611, 690, 844
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 578
BcoDI GTCTC 5 cut(s) 287, 373, 530, 709, 982
BfaI CTAG 2 cut(s) 267, 1011
BfmI CTRYAG 1 cut(s) 622
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 5 cut(s) 381, 538, 694, 930, 1142
BlsI GCNGC 5 cut(s) 382, 539, 695, 931, 1143
Bme1390I CCNGG 4 cut(s) 578, 611, 690, 844
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 5 cut(s) 6, 108, 149, 544, 793
BmrFI CCNGG 4 cut(s) 578, 611, 690, 844
BmsI GCATC 2 cut(s) 466, 599
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 982
Bpu10I CCTNAGC 1 cut(s) 1184
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 578
BsaI GGTCTC 4 cut(s) 287, 373, 530, 982
BsaJI CCNNGG 3 cut(s) 787, 842, 885
BsaWI WCCGGW 5 cut(s) 7, 109, 353, 1106, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 1091
Bse118I RCCGGY 2 cut(s) 680, 1119
Bse1I ACTGG 4 cut(s) 134, 397, 605, 1026
Bse3DI GCAATG 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 3 cut(s) 611, 690, 844
BseDI CCNNGG 3 cut(s) 787, 842, 885
BseGI GGATG 2 cut(s) 871, 1169
BseLI CCNNNNNNNGG 2 cut(s) 278, 1091
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 8 cut(s) 180, 189, 377, 425, 767, 962, 1164, 1171
BseNI ACTGG 4 cut(s) 134, 397, 605, 1026
BseRI GAGGAG 2 cut(s) 527, 846
BseXI GCAGC 3 cut(s) 367, 524, 941
BshFI GGCC 3 cut(s) 396, 472, 688
BshTI ACCGGT 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 1158
BsiSI CCGG 7 cut(s) 8, 110, 354, 578, 681, 1107, 1120
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 278, 1091
BsmAI GTCTC 5 cut(s) 287, 373, 530, 709, 982
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 3 cut(s) 396, 472, 688
Bso31I GGTCTC 4 cut(s) 287, 373, 530, 982
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 796, 1158
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 106, 495, 649, 822, 868
Bsp19I CCATGG 1 cut(s) 885
BspACI CCGC 4 cut(s) 540, 693, 833, 1142
BspANI GGCC 3 cut(s) 396, 472, 688
BspCNI CTCAG 8 cut(s) 179, 188, 376, 424, 766, 963, 1165, 1170
BspEI TCCGGA 1 cut(s) 109
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 5 cut(s) 6, 108, 149, 544, 793
BspPI GGATC 3 cut(s) 101, 114, 830
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 340
BspTNI GGTCTC 4 cut(s) 287, 373, 530, 982
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 680, 1119
BsrI ACTGG 4 cut(s) 134, 397, 605, 1026
BssAI RCCGGY 2 cut(s) 680, 1119
BssECI CCNNGG 3 cut(s) 787, 842, 885
BssMI GATC 5 cut(s) 106, 495, 649, 822, 868
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 787, 885
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 3 cut(s) 611, 690, 844
Bst4CI ACNGT 4 cut(s) 406, 524, 703, 1058
Bst6I CTCTTC 4 cut(s) 77, 163, 342, 486
BstAPI GCANNNNNTGC 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 4 cut(s) 242, 588, 686, 1130
BstDSI CCRYGG 1 cut(s) 885
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 2 cut(s) 871, 1169
BstKTI GATC 5 cut(s) 109, 498, 652, 825, 871
BstMAI GTCTC 5 cut(s) 287, 373, 530, 709, 982
BstMBI GATC 5 cut(s) 106, 495, 649, 822, 868
BstMWI GCNNNNNNNGC 5 cut(s) 237, 587, 690, 935, 1138
BstNI CCWGG 3 cut(s) 611, 690, 844
BstNSI RCATGY 1 cut(s) 631
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 4 cut(s) 576, 609, 688, 842
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 3 cut(s) 367, 524, 941
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 3 cut(s) 396, 472, 688
BtgI CCRYGG 1 cut(s) 885
BtsCI GGATG 2 cut(s) 871, 1169
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 402
Cac8I GCNNGC 4 cut(s) 242, 588, 686, 1130
CaiI CAGNNNCTG 2 cut(s) 479, 935
CciI TCATGA 1 cut(s) 567
Cfr10I RCCGGY 2 cut(s) 680, 1119
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 520, 1123
CspAI ACCGGT 1 cut(s) 1119
CviAII CATG 7 cut(s) 420, 568, 628, 673, 697, 886, 908
CviQI GTAC 2 cut(s) 520, 1123
DpnI GATC 5 cut(s) 108, 497, 651, 824, 870
DpnII GATC 5 cut(s) 106, 495, 649, 822, 868
EaeI YGGCCR 2 cut(s) 394, 470
Eam1104I CTCTTC 4 cut(s) 77, 163, 342, 486
EarI CTCTTC 4 cut(s) 77, 163, 342, 486
Ecl136II GAGCTC 1 cut(s) 1156
Eco130I CCWWGG 2 cut(s) 787, 885
Eco24I GRGCYC 2 cut(s) 796, 1158
Eco31I GGTCTC 4 cut(s) 287, 373, 530, 982
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 1156
Eco91I GGTNACC 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 676
EcoRII CCWGG 3 cut(s) 609, 688, 842
EcoT14I CCWWGG 2 cut(s) 787, 885
EcoT38I GRGCYC 2 cut(s) 796, 1158
ErhI CCWWGG 2 cut(s) 787, 885
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 7 cut(s) 423, 571, 631, 676, 700, 889, 911
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 334, 366
FaqI GGGAC 1 cut(s) 155
FatI CATG 7 cut(s) 419, 567, 627, 672, 696, 885, 907
FauI CCCGC 1 cut(s) 840
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 5 cut(s) 381, 538, 694, 930, 1142
FokI GGATG 2 cut(s) 858, 1176
FriOI GRGCYC 2 cut(s) 796, 1158
Fsp4HI GCNGC 5 cut(s) 381, 538, 694, 930, 1142
FspBI CTAG 2 cut(s) 267, 1011
GluI GCNGC 5 cut(s) 381, 538, 694, 930, 1142
GsuI CTGGAG 1 cut(s) 982
HaeIII GGCC 3 cut(s) 396, 472, 688
HapII CCGG 7 cut(s) 8, 110, 354, 578, 681, 1107, 1120
Hin1II CATG 7 cut(s) 423, 571, 631, 676, 700, 889, 911
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 9 cut(s) 87, 359, 426, 476, 571, 642, 881, 967, 1103
HpaII CCGG 7 cut(s) 8, 110, 354, 578, 681, 1107, 1120
HphI GGTGA 3 cut(s) 22, 368, 928
Hpy166II GTNNAC 2 cut(s) 91, 402
Hpy188I TCNGA 9 cut(s) 152, 178, 481, 595, 756, 880, 972, 1160, 1170
Hpy188III TCNNGA 8 cut(s) 44, 110, 267, 568, 653, 860, 1073, 1100
Hpy8I GTNNAC 2 cut(s) 91, 402
HpyAV CCTTC 3 cut(s) 294, 336, 907
HpyCH4III ACNGT 4 cut(s) 406, 524, 703, 1058
HpyCH4IV ACGT 2 cut(s) 448, 810
HpyCH4V TGCA 4 cut(s) 586, 1039, 1115, 1128
HpyF10VI GCNNNNNNNGC 5 cut(s) 237, 587, 690, 935, 1138
HpySE526I ACGT 2 cut(s) 448, 810
Hsp92II CATG 7 cut(s) 423, 571, 631, 676, 700, 889, 911
Kpn2I TCCGGA 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 5 cut(s) 106, 495, 649, 822, 868
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 4 cut(s) 10, 153, 542, 791
Lsp1109I GCAGC 3 cut(s) 367, 524, 941
LweI GCATC 2 cut(s) 466, 599
MaeI CTAG 2 cut(s) 267, 1011
MaeII ACGT 2 cut(s) 448, 810
MaeIII GTNAC 4 cut(s) 415, 605, 676, 827
MalI GATC 5 cut(s) 108, 497, 651, 824, 870
MboI GATC 5 cut(s) 106, 495, 649, 822, 868
MfeI CAATTG 1 cut(s) 532
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 796, 1158
MlsI TGGCCA 2 cut(s) 396, 472
MluCI AATT 2 cut(s) 486, 532
MluNI TGGCCA 2 cut(s) 396, 472
MlyI GAGTC 4 cut(s) 96, 565, 651, 1097
MmeI TCCRAC 1 cut(s) 796
Mox20I TGGCCA 2 cut(s) 396, 472
MroI TCCGGA 1 cut(s) 109
MroXI GAANNNNTTC 2 cut(s) 157, 1080
MscI TGGCCA 2 cut(s) 396, 472
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 1 cut(s) 566
Msp20I TGGCCA 2 cut(s) 396, 472
MspI CCGG 7 cut(s) 8, 110, 354, 578, 681, 1107, 1120
MspR9I CCNGG 4 cut(s) 578, 611, 690, 844
MunI CAATTG 1 cut(s) 532
MvaI CCWGG 3 cut(s) 611, 690, 844
MwoI GCNNNNNNNGC 5 cut(s) 237, 587, 690, 935, 1138
NciI CCSGG 1 cut(s) 578
NcoI CCATGG 1 cut(s) 885
NdeII GATC 5 cut(s) 106, 495, 649, 822, 868
NlaIII CATG 7 cut(s) 423, 571, 631, 676, 700, 889, 911
NlaIV GGNNCC 5 cut(s) 6, 108, 149, 544, 793
NmuCI GTSAC 1 cut(s) 605
NspI RCATGY 1 cut(s) 631
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdmI GAANNNNTTC 2 cut(s) 157, 1080
PfeI GAWTC 5 cut(s) 359, 426, 476, 881, 967
PinAI ACCGGT 1 cut(s) 1119
PkrI GCNGC 5 cut(s) 382, 539, 695, 931, 1143
PleI GAGTC 4 cut(s) 95, 565, 650, 1097
PpsI GAGTC 4 cut(s) 95, 565, 650, 1097
PpuMI RGGWCCY 1 cut(s) 256
PsiI TTATAA 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 609, 688, 842
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 3 cut(s) 609, 688, 842
PspN4I GGNNCC 5 cut(s) 6, 108, 149, 544, 793
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
PstNI CAGNNNCTG 2 cut(s) 479, 935
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 2 cut(s) 521, 1124
RsaNI GTAC 2 cut(s) 520, 1123
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 1158
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 951
SatI GCNGC 5 cut(s) 381, 538, 694, 930, 1142
Sau3AI GATC 5 cut(s) 106, 495, 649, 822, 868
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 4 cut(s) 96, 565, 651, 1097
ScrFI CCNGG 4 cut(s) 578, 611, 690, 844
SduI GDGCHC 2 cut(s) 796, 1158
SfaNI GCATC 2 cut(s) 466, 599
SfcI CTRYAG 1 cut(s) 622
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 2 cut(s) 486, 532
SsiI CCGC 4 cut(s) 540, 693, 833, 1142
SspMI CTAG 2 cut(s) 267, 1011
SstI GAGCTC 1 cut(s) 1158
StyD4I CCNGG 4 cut(s) 576, 609, 688, 842
StyI CCWWGG 2 cut(s) 787, 885
TaaI ACNGT 4 cut(s) 406, 524, 703, 1058
TaiI ACGT 2 cut(s) 451, 813
TaqI TCGA 7 cut(s) 120, 294, 340, 432, 441, 510, 1053
TaqII GACCGA 2 cut(s) 498, 1151
TasI AATT 2 cut(s) 486, 532
TauI GCSGC 2 cut(s) 696, 1144
TfiI GAWTC 5 cut(s) 359, 426, 476, 881, 967
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 2 cut(s) 102, 409
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 3 cut(s) 380, 537, 929
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 1 cut(s) 418
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 2 cut(s) 102, 409
VpaK11BI GGWCC 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 631
XmnI GAANNNNTTC 2 cut(s) 157, 1080
XspI CTAG 2 cut(s) 267, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.