Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011704

Physical Location & Seq

Genomic Coordinates Forward (+)

20887995 .. 20889786

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCGCCTCCCAAGAAATCAAAGAAGAGCAAGAAAGATAGGAAATTGAAGAAAAACTTAAGTTTGGTTCCAGTCGAGCCAAAAGCAGCAGATTCTGACTGGTGGGATAGTTTCTGGCACAAGAATTCTTCAACCCAAGATTCTTCACTATCAAATGATGAAGAGGAAGGTTTTAAGTATTTCTTTAGGGTCTCTAAGAAGACTTTTGACTATATCTGTTCCCTTGTAAGAGAAGACCTTGTGTCGAGGCCACCGTCAGGTCTCATCAACATAGAAGGAAGGCTTCTTAGTGTTGAGAAACAGGTTGCAATCGCCCTGAGAAGGTTGGCATCCGGTGAGTCTCAAGTCTCAGTGGGAGCTGCCTTTGGGGTAGGCCAGTCCACAGTTTCTCAGGTGACTTGGAGATTCATTGAAGCATTGGAAGAACGTGCCAAGCACCATCTCAAGTGGCCTGATTCCAACAGAATGGAAGAAATAAAGTCCAAACTCGAAGAAGCCTTTGGATTGCCCAATTGTTGTGGAGCCATAGATGGTACACACATCATTATGACCCTTCCTACCGTTCAAACATCAGACGATTGGTGTGACCTGGAGGATAACTACAGCATGCTCTTGCAGGGAATTGTTGACCATGAGATGAGGTTTCTTGACATTGTAACTGGTTGGCCTGGGGGCATGACGTTGTCTAGACTTTTAAAGTGTTCAGGATTTTTCAAGCTCTGTGAAGGTGGACAGCGTTTGAATGAAAATGTTAGAACTTTATCTGGAGGAGTAGAGATTAGAGAATACTTAGTTGGTGGGGTTGGCTATCCTCTGCTTCCCTGGCTCATAACTCCTTATGAAAGCAATGGCCTCCCAGCTTCCATTTCCGCTTTCAATGCCGTGCATGGGGCTGCAAGGTCACTTGCAGTAACGGCATTCTCGCAGTTAAAGGGCACTTGGAGAATCCTTAACAAGGTCATGTGGAGACCCGATAAGCGGAAACTTCCGAGCATCATCTTGGTATGTTGTTTACTTCACAATATAAGAATTGACAGTGGAGATATATTACAACCAGATGTTGCTTTATCTGGTCATCATGACTCGGGATATGGCGAACAATGCTGTAGGCAAGTTGATCCGTTGGGGAGGACTATGAGGGATATCCTAGTGAAACACTTGCTGCACAGCAAGCAGACCGCTGCACCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031519 GO:0031935 GO:0031936 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0034708 GO:0035097 GO:0035098 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045815 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080090 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

398

Amino Acids

44.36

Weight (kDa)

8.58

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63270
fragaria_vesca	FvH4_2g23101
malus_domestica	MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica	Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis	pycom03g20770
rosa_chinensis	RchiOBHm_Chr6g0290271
rosa_laevigata	RLG00000012229
rosa_multiflora	Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177190
rosa_rugosa	Rorug06G0211400
rosa_samantha	Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana	Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	870, 979, 1179
AclWI	GGATC	1 cut(s)	1112
AcsI	RAATTY	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	5 cut(s)	257, 321, 888, 955, 978
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	7 cut(s)	49, 132, 413, 566, 715, 742, 877
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	588, 667, 821
AjuI	GAANNNNNNNTTGG	4 cut(s)	483, 515, 777, 809
AleI	CACNNNNGTG	1 cut(s)	1189
AluBI	AGCT	3 cut(s)	359, 718, 860
AluI	AGCT	3 cut(s)	359, 718, 860
Alw26I	GTCTC	5 cut(s)	196, 266, 345, 352, 961
AlwI	GGATC	1 cut(s)	1112
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	5 cut(s)	248, 373, 449, 665, 850
ApeKI	GCWGC	5 cut(s)	86, 359, 893, 1162, 1181
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	347, 406
AvaI	CYCGRG	1 cut(s)	1084
BaeGI	GKGCMC	1 cut(s)	938
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	206, 240
BbvI	GCAGC	5 cut(s)	98, 346, 880, 1149, 1168
BccI	CCATC	2 cut(s)	447, 524
BceAI	ACGGC	2 cut(s)	866, 930
BciT130I	CCWGG	3 cut(s)	590, 669, 823
BcoDI	GTCTC	5 cut(s)	196, 266, 345, 352, 961
BfaI	CTAG	2 cut(s)	687, 1148
BfmI	CTRYAG	2 cut(s)	601, 1105
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	5 cut(s)	87, 360, 894, 1163, 1182
BlsI	GCNGC	5 cut(s)	88, 361, 895, 1164, 1183
Bme1390I	CCNGG	3 cut(s)	590, 669, 823
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	1084
BmiI	GGNNCC	3 cut(s)	6, 69, 523
BmrFI	CCNGG	3 cut(s)	590, 669, 823
BmsI	GCATC	2 cut(s)	338, 1002
BpiI	GAAGAC	2 cut(s)	206, 240
BpmI	CTGGAG	2 cut(s)	611, 786
BpuEI	CTTGAG	2 cut(s)	327, 428
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	3 cut(s)	196, 266, 961
BsaJI	CCNNGG	2 cut(s)	668, 821
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	5 cut(s)	257, 321, 888, 955, 978
Bse1I	ACTGG	4 cut(s)	71, 104, 376, 664
Bse3DI	GCAATG	1 cut(s)	853
BseBI	CCWGG	3 cut(s)	590, 669, 823
BseDI	CCNNGG	2 cut(s)	668, 821
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	5 cut(s)	257, 321, 888, 955, 978
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	3 cut(s)	308, 363, 404
BseNI	ACTGG	4 cut(s)	71, 104, 376, 664
BseRI	GAGGAG	1 cut(s)	783
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	5 cut(s)	98, 346, 880, 1149, 1168
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	2 cut(s)	1148, 1167
BshFI	GGCC	5 cut(s)	250, 375, 451, 667, 852
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	257, 321, 888, 955, 978
BsmAI	GTCTC	5 cut(s)	196, 266, 345, 352, 961
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	5 cut(s)	250, 375, 451, 667, 852
Bso31I	GGTCTC	3 cut(s)	196, 266, 961
BsoBI	CYCGRG	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp143I	GATC	1 cut(s)	1117
BspACI	CCGC	3 cut(s)	870, 979, 1179
BspANI	GGCC	5 cut(s)	250, 375, 451, 667, 852
BspCNI	CTCAG	3 cut(s)	309, 362, 403
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	3 cut(s)	6, 69, 523
BspPI	GGATC	1 cut(s)	1112
BspQI	GCTCTTC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	58
BspTNI	GGTCTC	3 cut(s)	196, 266, 961
BsrDI	GCAATG	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	71, 104, 376, 664
BssECI	CCNNGG	2 cut(s)	668, 821
BssMI	GATC	1 cut(s)	1117
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	590, 669, 823
Bst4CI	ACNGT	4 cut(s)	255, 385, 562, 1037
Bst6I	CTCTTC	2 cut(s)	20, 156
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	608, 1172
BstDEI	CTNAG	6 cut(s)	195, 287, 317, 349, 390, 790
BstENI	CCTNNNNNAGG	1 cut(s)	953
BstF5I	GGATG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	1120
BstMAI	GTCTC	5 cut(s)	196, 266, 345, 352, 961
BstMBI	GATC	1 cut(s)	1117
BstMWI	GCNNNNNNNGC	5 cut(s)	823, 878, 914, 1101, 1171
BstNI	CCWGG	3 cut(s)	590, 669, 823
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	3 cut(s)	588, 667, 821
BstSFI	CTRYAG	2 cut(s)	601, 1105
BstSLI	GKGCMC	1 cut(s)	938
BstV1I	GCAGC	5 cut(s)	98, 346, 880, 1149, 1168
BstV2I	GAAGAC	2 cut(s)	206, 240
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	250, 375, 451, 667, 852
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	2 cut(s)	357, 1042
Cac8I	GCNNGC	2 cut(s)	608, 1172
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	534
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	6 cut(s)	607, 632, 676, 887, 961, 1079
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	6 cut(s)	195, 287, 317, 349, 390, 790
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	1119
DpnII	GATC	1 cut(s)	1117
DraI	TTTAAA	1 cut(s)	696
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	20, 156
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	2 cut(s)	20, 156
Eco31I	GGTCTC	3 cut(s)	196, 266, 961
Eco32I	GATATC	1 cut(s)	1144
Eco88I	CYCGRG	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	588, 667, 821
EcoRV	GATATC	1 cut(s)	1144
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	6 cut(s)	610, 635, 679, 890, 964, 1082
FalI	AAGNNNNNCTT	6 cut(s)	41, 73, 167, 199, 267, 299
FatI	CATG	6 cut(s)	606, 631, 675, 886, 960, 1078
Fnu4HI	GCNGC	5 cut(s)	87, 360, 894, 1163, 1182
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	5 cut(s)	87, 360, 894, 1163, 1182
FspBI	CTAG	2 cut(s)	687, 1148
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	87, 360, 894, 1163, 1182
GsaI	CCCAGC	1 cut(s)	860
GsuI	CTGGAG	2 cut(s)	611, 786
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	250, 375, 451, 667, 852
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	610, 635, 679, 890, 964, 1082
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	7 cut(s)	92, 140, 338, 405, 455, 945, 1082
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	347, 406
Hpy166II	GTNNAC	5 cut(s)	381, 536, 628, 731, 1013
Hpy188I	TCNGA	3 cut(s)	97, 574, 990
Hpy188III	TCNNGA	6 cut(s)	647, 687, 705, 765, 1079, 1086
Hpy8I	GTNNAC	5 cut(s)	381, 536, 628, 731, 1013
HpyAV	CCTTC	6 cut(s)	161, 269, 273, 315, 563, 719
HpyCH4III	ACNGT	4 cut(s)	255, 385, 562, 1037
HpyCH4IV	ACGT	2 cut(s)	427, 680
HpyCH4V	TGCA	7 cut(s)	308, 616, 886, 896, 908, 1165, 1184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	823, 878, 914, 1101, 1171
HpyF3I	CTNAG	6 cut(s)	195, 287, 317, 349, 390, 790
HpySE526I	ACGT	2 cut(s)	427, 680
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	610, 635, 679, 890, 964, 1082
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	1117
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	356, 521
Lsp1109I	GCAGC	5 cut(s)	98, 346, 880, 1149, 1168
LweI	GCATC	2 cut(s)	338, 1002
MaeI	CTAG	2 cut(s)	687, 1148
MaeII	ACGT	2 cut(s)	427, 680
MaeIII	GTNAC	5 cut(s)	394, 584, 655, 900, 910
MalI	GATC	1 cut(s)	1119
MboI	GATC	1 cut(s)	1117
MfeI	CAATTG	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	938
MluCI	AATT	5 cut(s)	44, 124, 511, 621, 1029
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	347, 1076
MmeI	TCCRAC	1 cut(s)	483
MseI	TTAA	5 cut(s)	59, 174, 695, 929, 951
MslI	CAYNNNNRTG	2 cut(s)	545, 1189
MspA1I	CMGCKG	1 cut(s)	1181
MspCI	CTTAAG	1 cut(s)	58
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	3 cut(s)	590, 669, 823
MunI	CAATTG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	3 cut(s)	590, 669, 823
MwoI	GCNNNNNNNGC	5 cut(s)	823, 878, 914, 1101, 1171
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	1117
NlaIII	CATG	6 cut(s)	610, 635, 679, 890, 964, 1082
NlaIV	GGNNCC	3 cut(s)	6, 69, 523
NmuCI	GTSAC	3 cut(s)	394, 584, 900
NspI	RCATGY	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	1189
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	1 cut(s)	917
PfeI	GAWTC	5 cut(s)	92, 140, 405, 455, 945
PflFI	GACNNNGTC	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	88, 361, 895, 1164, 1183
PleI	GAGTC	2 cut(s)	346, 1076
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	346, 1076
Psp6I	CCWGG	3 cut(s)	588, 667, 821
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	3 cut(s)	588, 667, 821
PspN4I	GGNNCC	3 cut(s)	6, 69, 523
PstNI	CAGNNNCTG	1 cut(s)	95
PsyI	GACNNNGTC	1 cut(s)	682
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	2 cut(s)	545, 1189
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	5 cut(s)	59, 174, 695, 929, 951
SatI	GCNGC	5 cut(s)	87, 360, 894, 1163, 1182
Sau3AI	GATC	1 cut(s)	1117
SchI	GAGTC	2 cut(s)	347, 1076
ScrFI	CCNGG	3 cut(s)	590, 669, 823
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	2 cut(s)	338, 1002
SfcI	CTRYAG	2 cut(s)	601, 1105
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	545, 1189
SmlI	CTYRAG	3 cut(s)	58, 342, 443
SmoI	CTYRAG	3 cut(s)	58, 342, 443
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	5 cut(s)	44, 124, 511, 621, 1029
SsiI	CCGC	3 cut(s)	870, 979, 1179
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	687, 1148
StyD4I	CCNGG	3 cut(s)	588, 667, 821
TaaI	ACNGT	4 cut(s)	255, 385, 562, 1037
TaiI	ACGT	2 cut(s)	430, 683
TaqI	TCGA	3 cut(s)	75, 245, 489
TasI	AATT	5 cut(s)	44, 124, 511, 621, 1029
TfiI	GAWTC	5 cut(s)	92, 140, 405, 455, 945
Tru1I	TTAA	5 cut(s)	59, 174, 695, 929, 951
Tru9I	TTAA	5 cut(s)	59, 174, 695, 929, 951
TscAI	CASTG	2 cut(s)	357, 1042
TseFI	GTSAC	3 cut(s)	394, 584, 900
TseI	GCWGC	5 cut(s)	86, 359, 893, 1162, 1181
Tsp45I	GTSAC	3 cut(s)	394, 584, 900
TspDTI	ATGAA	4 cut(s)	174, 397, 759, 855
TspGWI	ACGGA	1 cut(s)	1110
TspRI	CASTG	2 cut(s)	357, 1042
Tth111I	GACNNNGTC	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	953
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	686
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	2 cut(s)	687, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.