Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000208.1

Orthogroup ID

OG0011704

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2491

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000208.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atgttgagtggcgggggtcaacgtgcctggtcagggctgtcaaagactgtgttgacgtgtccccttacttgtctcggaggtacagggcttgactgcaacgccgcgtggcgaatcttcccaaaccagaacatttctgacacaactctccagcttcacctttccctggctgttaagaatctcacttcccttcaagttcaaagccaaccagaagttgtgggctttcctgaactgagcttgatggcgccccccaagaaatcaaagaaaaataagaaagatggcaaattgaagaaatgcaaaagctcaagtgtggctccagtcgagcctaaagctcctgactctgagtggtgggatagtttctggcacaagaatgcttcaaacccaggctcttcactatcgaaagatgaggaagaaggatttaagtatttctttagggtctctagaaagacttttgattacatctgttctattgtaagagaagatcttgtgtcgaggccaccgtcagggctcatcaacattgaagggaggcttcttagtgttgagaaacaggttgcaattgccatgagaaggttggcatctggtgagtctcaggtctcagtgggagctgcctttggggtcggccagtccacagtttctcaggtgacttggagattcattgaagcattggaagaacgtgccaagcaccatctcaagtggcctgattccaataggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031519 GO:0031935 GO:0031936 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0034708 GO:0035097 GO:0035098 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045815 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080090 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

236

Amino Acids

26.05

Weight (kDa)

9.4

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63270
fragaria_vesca	FvH4_2g23101
malus_domestica	MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica	Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis	pycom03g20770
rosa_chinensis	RchiOBHm_Chr6g0290271
rosa_laevigata	RLG00000012229
rosa_multiflora	Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177190
rosa_rugosa	Rorug06G0211400
rosa_samantha	Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana	Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccII	CGCG	1 cut(s)	104
AciI	CCGC	2 cut(s)	12, 102
AcoI	YGGCCR	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	4 cut(s)	33, 163, 500, 564
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	191, 197, 286, 375, 518, 656
AjiI	CACGTC	1 cut(s)	57
AjnI	CCWGG	3 cut(s)	26, 162, 379
AluBI	AGCT	5 cut(s)	151, 234, 300, 329, 602
AluI	AGCT	5 cut(s)	151, 234, 300, 329, 602
Alw26I	GTCTC	4 cut(s)	77, 439, 588, 595
AoxI	GGCC	3 cut(s)	491, 616, 692
ApeKI	GCWGC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	146, 590, 649
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	232, 269, 690
BciT130I	CCWGG	3 cut(s)	28, 164, 381
BcoDI	GTCTC	4 cut(s)	77, 439, 588, 595
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	2 cut(s)	102, 603
BlsI	GCNGC	2 cut(s)	103, 604
Bme1390I	CCNGG	3 cut(s)	28, 164, 381
BmgBI	CACGTC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	243, 312
BmrFI	CCNGG	3 cut(s)	28, 164, 381
BmsI	GCATC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	131, 297
BpuEI	CTTGAG	2 cut(s)	286, 671
BsaHI	GRCGYC	1 cut(s)	242
BsaI	GGTCTC	2 cut(s)	439, 595
BsaJI	CCNNGG	2 cut(s)	162, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 163, 500, 564
Bse1I	ACTGG	2 cut(s)	314, 619
BseBI	CCWGG	3 cut(s)	28, 164, 381
BseDI	CCNNGG	2 cut(s)	162, 379
BseLI	CCNNNNNNNGG	4 cut(s)	33, 163, 500, 564
BseMII	CTCAG	5 cut(s)	221, 330, 599, 606, 647
BseNI	ACTGG	2 cut(s)	314, 619
BseXI	GCAGC	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	493, 618, 694
BshNI	GGYRCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	4 cut(s)	33, 163, 500, 564
BsmAI	GTCTC	4 cut(s)	77, 439, 588, 595
BsmFI	GGGAC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	493, 618, 694
Bso31I	GGTCTC	2 cut(s)	439, 595
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	2 cut(s)	12, 102
BspANI	GGCC	3 cut(s)	493, 618, 694
BspCNI	CTCAG	5 cut(s)	222, 331, 598, 605, 646
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	243, 312
BspQI	GCTCTTC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	2 cut(s)	439, 595
BsrI	ACTGG	2 cut(s)	314, 619
BssECI	CCNNGG	2 cut(s)	162, 379
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	28, 164, 381
Bst4CI	ACNGT	3 cut(s)	49, 498, 628
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	242
BstDEI	CTNAG	6 cut(s)	230, 339, 530, 585, 592, 633
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	4 cut(s)	77, 439, 588, 595
BstMBI	GATC	1 cut(s)	478
BstNI	CCWGG	3 cut(s)	28, 164, 381
BstSCI	CCNGG	3 cut(s)	26, 162, 379
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	493, 618, 694
BtrI	CACGTC	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	600
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	6 cut(s)	230, 339, 530, 585, 592, 633
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	2 cut(s)	439, 595
EcoRII	CCWGG	3 cut(s)	26, 162, 379
EcoT38I	GRGCYC	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
FaeI	CATG	1 cut(s)	562
FaiI	YATR	1 cut(s)	560
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 510, 542
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	558
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	102, 603
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	102, 603
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	102, 603
GsuI	CTGGAG	2 cut(s)	131, 297
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	493, 618, 694
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	20, 54
HindII	GTYRAC	2 cut(s)	20, 54
HinfI	GANTC	6 cut(s)	111, 175, 335, 581, 648, 698
HphI	GGTGA	3 cut(s)	146, 590, 649
Hpy166II	GTNNAC	3 cut(s)	20, 54, 624
Hpy188I	TCNGA	3 cut(s)	77, 136, 340
Hpy188III	TCNNGA	3 cut(s)	224, 332, 438
Hpy8I	GTNNAC	3 cut(s)	20, 54, 624
HpyAV	CCTTC	4 cut(s)	197, 404, 512, 558
HpyCH4III	ACNGT	3 cut(s)	49, 498, 628
HpyCH4IV	ACGT	3 cut(s)	22, 56, 670
HpyCH4V	TGCA	3 cut(s)	96, 294, 551
HpyF3I	CTNAG	6 cut(s)	230, 339, 530, 585, 592, 633
HpySE526I	ACGT	3 cut(s)	22, 56, 670
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	316, 334, 599
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	3 cut(s)	22, 56, 670
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	6 cut(s)	106, 298, 378, 419, 488, 677
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	2 cut(s)	281, 552
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	329, 590
MnlI	CCTC	4 cut(s)	71, 397, 483, 516
MseI	TTAA	2 cut(s)	171, 417
MslI	CAYNNNNRTG	1 cut(s)	366
MspR9I	CCNGG	3 cut(s)	28, 164, 381
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	28, 164, 381
MvnI	CGCG	1 cut(s)	104
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	2 cut(s)	243, 312
NmuCI	GTSAC	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	4 cut(s)	111, 175, 648, 698
PkrI	GCNGC	2 cut(s)	103, 604
PleI	GAGTC	2 cut(s)	329, 589
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	2 cut(s)	329, 589
Psp6I	CCWGG	3 cut(s)	26, 162, 379
PspGI	CCWGG	3 cut(s)	26, 162, 379
PspN4I	GGNNCC	2 cut(s)	243, 312
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	171, 417
SatI	GCNGC	2 cut(s)	102, 603
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	329, 590
ScrFI	CCNGG	3 cut(s)	28, 164, 381
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	581
SfoI	GGCGCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	301, 686
SmoI	CTYRAG	2 cut(s)	301, 686
Sse9I	AATT	2 cut(s)	281, 552
SsiI	CCGC	2 cut(s)	12, 102
SspDI	GGCGCC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	26, 162, 379
TaaI	ACNGT	3 cut(s)	49, 498, 628
TaiI	ACGT	3 cut(s)	25, 59, 673
TaqI	TCGA	3 cut(s)	318, 395, 488
TasI	AATT	2 cut(s)	281, 552
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	111, 175, 648, 698
Tru1I	TTAA	2 cut(s)	171, 417
Tru9I	TTAA	2 cut(s)	171, 417
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	640
TspRI	CASTG	1 cut(s)	600
XbaI	TCTAGA	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.