Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034661.1

Orthogroup ID

OG0011704

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 286

Gene Structure 286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 286 bp

agtaagggcattctcgcagttaaagggcacttggagaatcctcagcaaggttatgtggagaccagataaacggaaacttccaagcattatcttggtatgttgtttactccacaatataataatcgactgtggagatatattaaacccagatgttgcattatctggtcatcacgactcgggatatggagagcaatgctgtaagcaagttgatccattgggaaggtctatgagcgagaacttagttagacactggcagcatagcaagcaaacagctgcatcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031519 GO:0031935 GO:0031936 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0034708 GO:0035097 GO:0035098 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045815 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080090 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

9.17

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63270
fragaria_vesca	FvH4_2g23101
malus_domestica	MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica	Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis	pycom03g20770
rosa_chinensis	RchiOBHm_Chr6g0290271
rosa_laevigata	RLG00000012229
rosa_multiflora	Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177190
rosa_rugosa	Rorug06G0211400
rosa_samantha	Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana	Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	254, 273
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	260, 266
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	255, 274
BlsI	GCNGC	2 cut(s)	256, 275
BmeT110I	CYCGRG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	260, 266
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	42, 239
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	260, 266
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	264
CviJI	RGCY	1 cut(s)	273
CviKI_1	RGCY	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	42, 239
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	45
FaiI	YATR	7 cut(s)	54, 98, 117, 138, 184, 228, 259
Fnu4HI	GCNGC	2 cut(s)	255, 274
Fsp4HI	GCNGC	2 cut(s)	255, 274
GluI	GCNGC	2 cut(s)	255, 274
HinfI	GANTC	2 cut(s)	37, 174
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	171, 178
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	156, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	42, 239
Kzo9I	GATC	1 cut(s)	209
LpnPI	CCDG	4 cut(s)	76, 148, 160, 236
Lsp1109I	GCAGC	2 cut(s)	260, 266
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	21, 141
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	256, 275
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	21, 141
SatI	GCNGC	2 cut(s)	255, 274
Sau3AI	GATC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	3 cut(s)	52, 225, 275
SmiMI	CAYNNNNRTG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	21, 141
Tru9I	TTAA	2 cut(s)	21, 141
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	254, 273
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.