Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011704

Physical Location & Seq

Genomic Coordinates Forward (+)

52210397 .. 52212446

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCGCCCCCCAAGAAATCAAAGAAAAATAAGAAAGATGGCAAATTGAAGAAATGCAAAAGCTCAAGTGTGGCTCCAGTCGAGCCTAAAGCTCCTGACTCTGAGTGGTGGGATAGTTTCTGGCACAAGAATGCTTCAAACCCAGGCTCTTCACTATCGAAAGATGAGGAAGAAGGATTTAAGTATTTCTTTAGGGTCTCTAGAAAGACTTTTGATTACATCTGTTCTATTGTAAGAGAAGATCTTGTGTCGAGGCCACCGTCAGGGCTCATCAACATTGAAGGGAGGCTTCTTAGTGTTGAGAAACAGGTTGCAATTGCCATGAGAAGGTTGGCATCTGGTGAGTCTCAGGTCTCAGTGGGAGCTGCCTTTGGGGTCGGCCAGTCCACAGTTTCTCAGGTGACTTGGAGATTCATTGAAGCATTGGAAGAACGTGCCAAGCACCATCTCAAGTGGCCTGATTCCAATAGGATGCAGGAAATTAAGTCTAAACTTGAAGCATCTTTTGGATTGCCTAATTGCTGTGGAGCCATAGACGGCACACACATCATAATGACACTTCCTACTGTTCAAGCATCAGACGATTGGTGTGACACTGAGAAAAATTACAGCATGCTCTTGCAGGGAACTGTCGATCATGAGTTAAGATTCCTTGATATTGTGACCGGTTGGCCTGGGGGAATGACAGTGTCTAGACTATTAAAGTGTTCAGGGCTTTTCAAGCTGTGCGAAAGTGGACAGCGTTTAAATGGGAATGTTAGAACTTTATCTGAAGGAGGAGAGATCAGAGAATATGTGGTTGGTGGGGTTGGCTATCCTCTCCTTCCCTGGCTCATAACTCCTTATGAAAGCAGTGGCCTTCCAGCTTCTGTTGTTTCTGCTTTTAATGCCGCGCATGAGGCTGCAAGGTCTCTTGCAGTAAGGGCATTCTCGCAGTTAAAGGGCACTTGGAGAATCCTCAGCAAGGTTATGTGGAGACCAGATAAACGGAAACTTCCAAGCATTATCTTGGTATGTTGTTTACTCCACAATATAATAATCGACTGTGGAGATATATTAAACCCAGATGTTGCTTTATCTGGTCATCACGACTCGGGATATGGAGAGCAATGCTGTAAGCAAGTTGATCCATTAGGAAGGTCTATGAGCGAGAACTTAGTTAGACACTGGCAGCATAGCAAGCAAACAGCTGCATCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031519 GO:0031935 GO:0031936 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0034708 GO:0035097 GO:0035098 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045815 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080090 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

400

Amino Acids

44.36

Weight (kDa)

8.9

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	157 - 348	9.1e-08	Plant transposon protein
DDE_Tnp_4	PF13359	178 - 344	7.8e-19	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63270
fragaria_vesca	FvH4_2g23101
malus_domestica	MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica	Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis	pycom03g20770
rosa_chinensis	RchiOBHm_Chr6g0290271
rosa_laevigata	RLG00000012229
rosa_multiflora	Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177190
rosa_rugosa	Rorug06G0211400
rosa_samantha	Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana	Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	893
AciI	CCGC	1 cut(s)	891
AclWI	GGATC	1 cut(s)	1121
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	263, 327, 964
AgeI	ACCGGT	1 cut(s)	665
AgsI	TTSAA	7 cut(s)	49, 138, 281, 419, 497, 572, 721
AjnI	CCWGG	3 cut(s)	142, 673, 827
AjuI	GAANNNNNNNTTGG	4 cut(s)	489, 521, 783, 815
AluBI	AGCT	6 cut(s)	63, 92, 365, 724, 866, 1190
AluI	AGCT	6 cut(s)	63, 92, 365, 724, 866, 1190
Alw26I	GTCTC	5 cut(s)	202, 351, 358, 915, 970
AlwI	GGATC	1 cut(s)	1121
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	1093
AoxI	GGCC	5 cut(s)	254, 379, 455, 671, 856
ApeKI	GCWGC	4 cut(s)	365, 902, 1171, 1190
AsiGI	ACCGGT	1 cut(s)	665
AspLEI	GCGC	2 cut(s)	7, 895
AsuHPI	GGTGA	2 cut(s)	353, 412
AvaI	CYCGRG	1 cut(s)	1093
BaeGI	GKGCMC	1 cut(s)	947
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	959
BbvI	GCAGC	4 cut(s)	352, 889, 1177, 1183
BccI	CCATC	2 cut(s)	32, 453
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	3 cut(s)	144, 675, 829
BcoDI	GTCTC	5 cut(s)	202, 351, 358, 915, 970
BfaI	CTAG	2 cut(s)	201, 693
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	5 cut(s)	366, 891, 903, 1172, 1191
BlsI	GCNGC	5 cut(s)	367, 892, 904, 1173, 1192
Bme1390I	CCNGG	3 cut(s)	144, 675, 829
BmeT110I	CYCGRG	1 cut(s)	1093
BmiI	GGNNCC	3 cut(s)	6, 75, 529
BmrFI	CCNGG	3 cut(s)	144, 675, 829
BmsI	GCATC	4 cut(s)	344, 462, 509, 584
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	959
BpuEI	CTTGAG	2 cut(s)	49, 434
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	4 cut(s)	202, 358, 915, 970
BsaJI	CCNNGG	3 cut(s)	142, 674, 827
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 327, 964
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	3 cut(s)	77, 382, 1172
Bse3DI	GCAATG	1 cut(s)	1115
BseBI	CCWGG	3 cut(s)	144, 675, 829
BseDI	CCNNGG	3 cut(s)	142, 674, 827
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	263, 327, 964
BseMI	GCAATG	1 cut(s)	1115
BseMII	CTCAG	6 cut(s)	93, 362, 369, 410, 588, 973
BseNI	ACTGG	3 cut(s)	77, 382, 1172
BseRI	GAGGAG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	947
BseXI	GCAGC	4 cut(s)	352, 889, 1177, 1183
Bsh1236I	CGCG	1 cut(s)	893
BshFI	GGCC	5 cut(s)	256, 381, 457, 673, 858
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	665
BsiHKCI	CYCGRG	1 cut(s)	1093
BsiSI	CCGG	1 cut(s)	666
BslI	CCNNNNNNNGG	3 cut(s)	263, 327, 964
BsmAI	GTCTC	5 cut(s)	202, 351, 358, 915, 970
BsmI	GAATGC	2 cut(s)	136, 926
BsnI	GGCC	5 cut(s)	256, 381, 457, 673, 858
Bso31I	GGTCTC	4 cut(s)	202, 358, 915, 970
BsoBI	CYCGRG	1 cut(s)	1093
Bsp1286I	GDGCHC	2 cut(s)	270, 947
Bsp143I	GATC	4 cut(s)	241, 634, 783, 1126
BspACI	CCGC	1 cut(s)	891
BspANI	GGCC	5 cut(s)	256, 381, 457, 673, 858
BspCNI	CTCAG	6 cut(s)	94, 361, 368, 409, 589, 972
BspFNI	CGCG	1 cut(s)	893
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	6, 75, 529
BspPI	GGATC	1 cut(s)	1121
BspQI	GCTCTTC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	4 cut(s)	202, 358, 915, 970
BsrDI	GCAATG	1 cut(s)	1115
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	3 cut(s)	77, 382, 1172
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	142, 674, 827
BssMI	GATC	4 cut(s)	241, 634, 783, 1126
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	144, 675, 829
Bst4CI	ACNGT	6 cut(s)	261, 391, 568, 631, 688, 1046
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	614, 1181
BstDEI	CTNAG	8 cut(s)	102, 293, 348, 355, 396, 597, 959, 1156
BstENI	CCTNNNNNAGG	1 cut(s)	962
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	893
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 895
BstKTI	GATC	4 cut(s)	244, 637, 786, 1129
BstMAI	GTCTC	5 cut(s)	202, 351, 358, 915, 970
BstMBI	GATC	4 cut(s)	241, 634, 783, 1126
BstMWI	GCNNNNNNNGC	5 cut(s)	721, 887, 899, 923, 1180
BstNI	CCWGG	3 cut(s)	144, 675, 829
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	3 cut(s)	142, 673, 827
BstSLI	GKGCMC	1 cut(s)	947
BstUI	CGCG	1 cut(s)	893
BstV1I	GCAGC	4 cut(s)	352, 889, 1177, 1183
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	5 cut(s)	256, 381, 457, 673, 858
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	5 cut(s)	363, 594, 693, 859, 1165
Cac8I	GCNNGC	2 cut(s)	614, 1181
CaiI	CAGNNNCTG	1 cut(s)	869
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	7, 895
Cfr10I	RCCGGY	1 cut(s)	665
CspAI	ACCGGT	1 cut(s)	665
CviAII	CATG	4 cut(s)	322, 613, 638, 896
DdeI	CTNAG	8 cut(s)	102, 293, 348, 355, 396, 597, 959, 1156
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	243, 636, 785, 1128
DpnII	GATC	4 cut(s)	241, 634, 783, 1126
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	4 cut(s)	202, 358, 915, 970
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	1093
EcoNI	CCTNNNNNAGG	1 cut(s)	962
EcoRII	CCWGG	3 cut(s)	142, 673, 827
EcoT38I	GRGCYC	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	325, 616, 641, 899
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 273, 305
FatI	CATG	4 cut(s)	321, 612, 637, 895
Fnu4HI	GCNGC	5 cut(s)	366, 891, 903, 1172, 1191
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	366, 891, 903, 1172, 1191
FspBI	CTAG	2 cut(s)	201, 693
GlaI	GCGC	2 cut(s)	6, 894
GluI	GCNGC	5 cut(s)	366, 891, 903, 1172, 1191
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	256, 381, 457, 673, 858
HapII	CCGG	1 cut(s)	666
HhaI	GCGC	2 cut(s)	7, 895
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	325, 616, 641, 899
Hin6I	GCGC	2 cut(s)	5, 893
HinP1I	GCGC	2 cut(s)	5, 893
HinfI	GANTC	7 cut(s)	98, 344, 411, 461, 648, 954, 1091
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	2 cut(s)	353, 412
Hpy166II	GTNNAC	3 cut(s)	387, 737, 1022
Hpy188I	TCNGA	4 cut(s)	103, 580, 772, 788
Hpy188III	TCNNGA	6 cut(s)	95, 201, 638, 693, 1088, 1095
Hpy8I	GTNNAC	3 cut(s)	387, 737, 1022
HpyAV	CCTTC	7 cut(s)	167, 275, 321, 767, 833, 869, 1131
HpyCH4III	ACNGT	6 cut(s)	261, 391, 568, 631, 688, 1046
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	7 cut(s)	57, 314, 475, 622, 905, 917, 1193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	721, 887, 899, 923, 1180
HpyF3I	CTNAG	8 cut(s)	102, 293, 348, 355, 396, 597, 959, 1156
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	325, 616, 641, 899
HspAI	GCGC	2 cut(s)	5, 893
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	241, 634, 783, 1126
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	79, 97, 362, 527
Lsp1109I	GCAGC	4 cut(s)	352, 889, 1177, 1183
LweI	GCATC	4 cut(s)	344, 462, 509, 584
MaeI	CTAG	2 cut(s)	201, 693
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	3 cut(s)	400, 590, 661
MalI	GATC	4 cut(s)	243, 636, 785, 1128
MboI	GATC	4 cut(s)	241, 634, 783, 1126
MboII	GAAGA	5 cut(s)	61, 141, 182, 251, 440
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	270, 947
MluCI	AATT	5 cut(s)	44, 315, 480, 517, 604
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	92, 353, 1085
MnlI	CCTC	7 cut(s)	160, 246, 279, 770, 828, 892, 968
MseI	TTAA	8 cut(s)	180, 483, 644, 701, 746, 885, 938, 1058
MslI	CAYNNNNRTG	3 cut(s)	129, 551, 1198
MspA1I	CMGCKG	1 cut(s)	1190
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	3 cut(s)	144, 675, 829
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	136, 926
MvaI	CCWGG	3 cut(s)	144, 675, 829
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	5 cut(s)	721, 887, 899, 923, 1180
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	241, 634, 783, 1126
NlaIII	CATG	4 cut(s)	325, 616, 641, 899
NlaIV	GGNNCC	3 cut(s)	6, 75, 529
NmuCI	GTSAC	3 cut(s)	400, 590, 661
NspI	RCATGY	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	616
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PctI	GAATGC	2 cut(s)	136, 926
PfeI	GAWTC	4 cut(s)	411, 461, 648, 954
PflFI	GACNNNGTC	1 cut(s)	688
PinAI	ACCGGT	1 cut(s)	665
PkrI	GCNGC	5 cut(s)	367, 892, 904, 1173, 1192
PleI	GAGTC	3 cut(s)	92, 352, 1085
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	92, 352, 1085
Psp6I	CCWGG	3 cut(s)	142, 673, 827
PspGI	CCWGG	3 cut(s)	142, 673, 827
PspN4I	GGNNCC	3 cut(s)	6, 75, 529
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	1190
RseI	CAYNNNNRTG	3 cut(s)	129, 551, 1198
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	8 cut(s)	180, 483, 644, 701, 746, 885, 938, 1058
SatI	GCNGC	5 cut(s)	366, 891, 903, 1172, 1191
Sau3AI	GATC	4 cut(s)	241, 634, 783, 1126
SchI	GAGTC	3 cut(s)	92, 353, 1085
ScrFI	CCNGG	3 cut(s)	144, 675, 829
SduI	GDGCHC	2 cut(s)	270, 947
SfaNI	GCATC	4 cut(s)	344, 462, 509, 584
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	3 cut(s)	129, 551, 1198
SmlI	CTYRAG	2 cut(s)	64, 449
SmoI	CTYRAG	2 cut(s)	64, 449
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	5 cut(s)	44, 315, 480, 517, 604
SsiI	CCGC	1 cut(s)	891
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	201, 693
StyD4I	CCNGG	3 cut(s)	142, 673, 827
TaaI	ACNGT	6 cut(s)	261, 391, 568, 631, 688, 1046
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	5 cut(s)	81, 158, 251, 633, 1041
TasI	AATT	5 cut(s)	44, 315, 480, 517, 604
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	4 cut(s)	411, 461, 648, 954
Tru1I	TTAA	8 cut(s)	180, 483, 644, 701, 746, 885, 938, 1058
Tru9I	TTAA	8 cut(s)	180, 483, 644, 701, 746, 885, 938, 1058
TscAI	CASTG	5 cut(s)	363, 601, 693, 859, 1172
TseFI	GTSAC	3 cut(s)	400, 590, 661
TseI	GCWGC	4 cut(s)	365, 902, 1171, 1190
Tsp45I	GTSAC	3 cut(s)	400, 590, 661
TspDTI	ATGAA	2 cut(s)	403, 861
TspGWI	ACGGA	1 cut(s)	1003
TspRI	CASTG	5 cut(s)	363, 601, 693, 859, 1172
Tth111I	GACNNNGTC	1 cut(s)	688
XagI	CCTNNNNNAGG	1 cut(s)	962
XbaI	TCTAGA	2 cut(s)	200, 692
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	201, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.