Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011704

Physical Location & Seq

Genomic Coordinates Reverse (-)

2488054 .. 2489897

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGCCTCCCAAGAAATCAAAGAAAAGCAAGAAAGATAGGAAATTGAAGAAAAACTTAAGCTTGGTTCCAGTCGAGCCTAAAGCCAGAGACTCTGATTGGTGGGATAGTTTCTTCAACCCAAGAAGGCTTCTTAGTGTTGAGAAACAGGTTGCAATCACCCTAAGAAGGCTTGCATCCCATGAGTCTCAAGTCTCAGTGGGACCTGCCTTCGGGGTAGGCCAGTCCACAGTTTCTCAGCACCATCTCAAGTGGCCTGATTCCAACAGAATGGAAGAAATAAAGTCCAAACTTGAAGAAGCCTTTGGATTGCCCAATTGTTGTGGAGCCATAGATGGTATAGACATCATTATGACCCTTCCTACTGGAATTGTTGACCAGGAGTTGAGGTTTCTTGACATTGTAAGTGGTTGGCCTGGGGGCATGACGGTGTCTAGACTTTTGAAGTGTTCAGGATTTTTCAAGCTCTGTGAAGGTGGACAGCGTTTGAATGAAAATGTTAGAACTTTATCTGGAGGAGTAGAGATTAGAGAATACTTGGTGGGGGCTGCAAGGTCACTTGCAGTAACGGCATTCTTGCAGTTAAAGGGCACTTGGAGAATCCTTAACAAGGTCATGTGGAGACCCGATAAGCAGAAACATCTGAGGATCATCTTGGTAGGTTGTTTACTTCACAATATAAGAATTGACAGTGGAGATATATTACAACCAGATGTTGCTTTATCTGGTCATCATGACTCGGGATATGGCGAACAATGCTGTAGGCAAGTTGATCCGTTGGGGAGGACTATGAGGGATATCCTAGTGAAACACTTGCTGCACAGCAAGCAGACCGCTGCACCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031519 GO:0031935 GO:0031936 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0034708 GO:0035097 GO:0035098 GO:0035102 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045815 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080090 GO:1902275 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

283

Amino Acids

31.55

Weight (kDa)

9.61

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63270
fragaria_vesca	FvH4_2g23101
malus_domestica	MD03G1260000.v1.1 MD11G1280300.v1.1
prunus_persica	Prupe.3G034000_v2.0.a1 Prupe.8G236200_v2.0.a1
pyrus_communis	pycom03g20770
rosa_chinensis	RchiOBHm_Chr6g0290271
rosa_laevigata	RLG00000012229
rosa_multiflora	Rmu_sc0034661.1_g000001 Rmu_ssc0000208.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177190
rosa_rugosa	Rorug06G0211400
rosa_samantha	Rh6AG321700 Rh6BG329000 Rh6CG334900 Rh6DG322000
rosa_wichuraiana	Rw6G027790 Rw6G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	834
AclWI	GGATC	2 cut(s)	656, 767
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	168, 212, 610
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	49, 118, 296, 445, 463, 490
AjnI	CCWGG	2 cut(s)	378, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AleI	CACNNNNGTG	1 cut(s)	844
AluBI	AGCT	2 cut(s)	63, 466
AluI	AGCT	2 cut(s)	63, 466
Alw26I	GTCTC	4 cut(s)	84, 192, 199, 616
AlwI	GGATC	2 cut(s)	656, 767
Ama87I	CYCGRG	1 cut(s)	739
AoxI	GGCC	3 cut(s)	220, 254, 413
ApeKI	GCWGC	3 cut(s)	548, 817, 836
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	535, 804, 823
BccI	CCATC	2 cut(s)	252, 329
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	380, 417
BcoDI	GTCTC	4 cut(s)	84, 192, 199, 616
BfaI	CTAG	2 cut(s)	435, 803
BfmI	CTRYAG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	3 cut(s)	549, 818, 837
BlsI	GCNGC	3 cut(s)	550, 819, 838
Bme1390I	CCNGG	2 cut(s)	380, 417
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	739
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	6, 69, 204, 328
BmrFI	CCNGG	2 cut(s)	380, 417
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	174, 233
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 212, 610
Bse1I	ACTGG	3 cut(s)	71, 223, 370
BseBI	CCWGG	2 cut(s)	380, 417
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	3 cut(s)	168, 212, 610
BseMII	CTCAG	3 cut(s)	210, 251, 635
BseNI	ACTGG	3 cut(s)	71, 223, 370
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	3 cut(s)	535, 804, 823
BsgI	GTGCAG	2 cut(s)	803, 822
BshFI	GGCC	3 cut(s)	222, 256, 415
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	168, 212, 610
BsmAI	GTCTC	4 cut(s)	84, 192, 199, 616
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	3 cut(s)	222, 256, 415
Bso31I	GGTCTC	1 cut(s)	616
BsoBI	CYCGRG	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	2 cut(s)	648, 772
BspACI	CCGC	1 cut(s)	834
BspANI	GGCC	3 cut(s)	222, 256, 415
BspCNI	CTCAG	3 cut(s)	209, 250, 636
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	4 cut(s)	6, 69, 204, 328
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	656, 767
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	616
BsrI	ACTGG	3 cut(s)	71, 223, 370
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	648, 772
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	380, 417
Bst4CI	ACNGT	3 cut(s)	232, 430, 692
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	174, 827
BstDEI	CTNAG	5 cut(s)	134, 164, 196, 237, 644
BstENI	CCTNNNNNAGG	1 cut(s)	608
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	651, 775
BstMAI	GTCTC	4 cut(s)	84, 192, 199, 616
BstMBI	GATC	2 cut(s)	648, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 756, 826
BstNI	CCWGG	2 cut(s)	380, 417
BstSCI	CCNGG	2 cut(s)	378, 415
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	3 cut(s)	535, 804, 823
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	222, 256, 415
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	204, 697
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	174, 827
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	182, 424, 616, 734
DdeI	CTNAG	5 cut(s)	134, 164, 196, 237, 644
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	650, 774
DpnII	GATC	2 cut(s)	648, 772
Eco31I	GGTCTC	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	739
EcoNI	CCTNNNNNAGG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	378, 415
EcoRV	GATATC	1 cut(s)	799
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	185, 427, 619, 737
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	4 cut(s)	181, 423, 615, 733
Fnu4HI	GCNGC	3 cut(s)	549, 818, 837
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	549, 818, 837
FspBI	CTAG	2 cut(s)	435, 803
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	549, 818, 837
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	222, 256, 415
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	185, 427, 619, 737
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	5 cut(s)	92, 185, 260, 600, 737
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	228, 376, 479, 668
Hpy188I	TCNGA	2 cut(s)	97, 645
Hpy188III	TCNNGA	6 cut(s)	395, 435, 453, 513, 734, 741
Hpy8I	GTNNAC	4 cut(s)	228, 376, 479, 668
HpyAV	CCTTC	5 cut(s)	120, 162, 220, 368, 467
HpyCH4III	ACNGT	3 cut(s)	232, 430, 692
HpyCH4V	TGCA	7 cut(s)	155, 176, 551, 563, 580, 820, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 756, 826
HpyF3I	CTNAG	5 cut(s)	134, 164, 196, 237, 644
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	185, 427, 619, 737
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	648, 772
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	535, 804, 823
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	435, 803
MaeIII	GTNAC	2 cut(s)	555, 565
MalI	GATC	2 cut(s)	650, 774
MboI	GATC	2 cut(s)	648, 772
MboII	GAAGA	4 cut(s)	61, 106, 287, 308
MfeI	CAATTG	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	4 cut(s)	44, 316, 369, 684
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	86, 194, 731
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	18, 381, 509, 639, 777, 786
MseI	TTAA	3 cut(s)	59, 584, 606
MslI	CAYNNNNRTG	3 cut(s)	350, 428, 844
MspA1I	CMGCKG	1 cut(s)	836
MspCI	CTTAAG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	380, 417
MunI	CAATTG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	2 cut(s)	380, 417
MwoI	GCNNNNNNNGC	3 cut(s)	569, 756, 826
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	648, 772
NlaIII	CATG	4 cut(s)	185, 427, 619, 737
NlaIV	GGNNCC	4 cut(s)	6, 69, 204, 328
NmuCI	GTSAC	1 cut(s)	555
OliI	CACNNNNGTG	1 cut(s)	844
PagI	TCATGA	1 cut(s)	733
PctI	GAATGC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	260, 600
PflFI	GACNNNGTC	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	550, 819, 838
PleI	GAGTC	3 cut(s)	86, 193, 731
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	86, 193, 731
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	378, 415
PspGI	CCWGG	2 cut(s)	378, 415
PspN4I	GGNNCC	4 cut(s)	6, 69, 204, 328
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	430
RseI	CAYNNNNRTG	3 cut(s)	350, 428, 844
SaqAI	TTAA	3 cut(s)	59, 584, 606
SatI	GCNGC	3 cut(s)	549, 818, 837
Sau3AI	GATC	2 cut(s)	648, 772
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	3 cut(s)	86, 194, 731
ScrFI	CCNGG	2 cut(s)	380, 417
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	9 cut(s)	65, 153, 208, 392, 468, 478, 557, 615, 664
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	760
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	3 cut(s)	350, 428, 844
SmlI	CTYRAG	3 cut(s)	58, 189, 248
SmoI	CTYRAG	3 cut(s)	58, 189, 248
Sse9I	AATT	4 cut(s)	44, 316, 369, 684
SsiI	CCGC	1 cut(s)	834
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	435, 803
StyD4I	CCNGG	2 cut(s)	378, 415
TaaI	ACNGT	3 cut(s)	232, 430, 692
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	44, 316, 369, 684
TfiI	GAWTC	2 cut(s)	260, 600
Tru1I	TTAA	3 cut(s)	59, 584, 606
Tru9I	TTAA	3 cut(s)	59, 584, 606
TscAI	CASTG	2 cut(s)	204, 697
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	3 cut(s)	548, 817, 836
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	2 cut(s)	204, 697
Tth111I	GACNNNGTC	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	608
XbaI	TCTAGA	1 cut(s)	434
XspI	CTAG	2 cut(s)	435, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.