Prupe.3G012300_v2.0.a1

protein DJ-1 homolog D-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
757513 .. 760471
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G012300.1

Sequence Viewer

Length: 1152 bp
ATGGGAAATCCGAAAGGCGAGGAGCAGAGGAGGGTGTTGTTACTGTGCGGGGACTACATGGAAGATTACGAGGCAATGGTCCCATTTCAAGCACTGCAGGCATTTGGAGTCTCTGTTGATGCAGTTTCTCCTGGCAAGAAAGCGGGTGATATCTGCGCCACAGCCATAACCATTAAAGTGGAGTCCACTGACCGGGCTTATACCGAATCTCGTGGTCACAATTTCACACTGAATGCAACATTTGATGAGATTGAATTTGACGAATATGATGGTCTACTTATACCAGGAGGACGATCTCCTGAACATCTTGCTATGAATGCATCGGTTGTAGAATTGGTGAGAAAATTTTCTGACTCCAGAAAGCCAATTGCTGCTATTTGCCATGGGCAGTTGGTCTTAGCAGCTGCAGGCGCTGTTAAAGGTCGCAAGTGCACAGCGTTTCCAACTGTGAAACCTGGATTGGTTGCTGCTGGTGCTCACTGGGTAGAACCCGATACATTGTCAGTGGGCGTTGTTGATGATAATATAGTTACTGGGGTCACGTATTATGGCAATCCTGAGTTCATTAGGCTTTTTCTCAAGGCACTAGGAGGCAACATATCTGGTTCTGGGAGAAGGGTCCTCATCATCTGTGGAGACTACGTGGAAGATTATGAGGTAACTGTGCCTTATCAGACCCTTAAAGTTCTAGGATGCCATGTTGATGTGGTTTGCCCCAAGAAGAAAGCCGGTGATACCTGCCCAACTGCTATCCGTGATCTTGAAGGGGCCCAAACCTGCAGTGAAACGCAGGGACAAAATTTTGTTTTAACAGCTGACTTTGAATCCGTAGATGCCTCAAGTTACGACGCTCTTGTACTCCCTGGAGGAAAAGATCCAGAGGTTTTGTCACTAAATGAGGATGTTATTGTACTAGCGAAACAATTTATGGAAGCCAGGAAACCAATTGCATCCATCTGCCATGGCCTGGAAATTTTAGTTGCTGCTGGTGTTCTGCAGGGGAAGAAATTTACTGGATACCCAGGGATTAAGGCTCATGTGGTTGTGTCAGGGGGGACGTTTGCGGAAGCGAATCCAATAGATCGTTGTGTCACTGATGTAAATCTGGTTACCGCAGCAGCGTGGCATGGCCAACCAGAGTTGCTAATTTAA

Protein Analysis

384

Amino Acids

40.88

Weight (kDa)

5.06

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 746, 785
AccB7I CCANNNNNTGG 1 cut(s) 967
AccI GTMKAC 1 cut(s) 274
AciI CCGC 4 cut(s) 48, 143, 1064, 1113
AclWI GGATC 1 cut(s) 869
AcoI YGGCCR 1 cut(s) 1129
AcsI RAATTY 5 cut(s) 254, 344, 799, 972, 1007
AfaI GTAC 2 cut(s) 858, 912
AfiI CCNNNNNNNGG 2 cut(s) 192, 967
AgsI TTSAA 4 cut(s) 89, 254, 764, 824
AjnI CCWGG 7 cut(s) 130, 283, 454, 862, 935, 966, 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 2 cut(s) 404, 815
AluI AGCT 2 cut(s) 404, 815
Alw21I GWGCWC 2 cut(s) 434, 478
Alw26I GTCTC 2 cut(s) 115, 630
Alw44I GTGCAC 1 cut(s) 430
AlwI GGATC 1 cut(s) 869
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 3 cut(s) 768, 964, 1129
ApaI GGGCCC 1 cut(s) 772
ApaLI GTGCAC 1 cut(s) 430
ApeKI GCWGC 7 cut(s) 371, 401, 404, 467, 983, 1115, 1118
ApoI RAATTY 5 cut(s) 254, 344, 799, 972, 1007
Asp700I GAANNNNTTC 1 cut(s) 346
AspLEI GCGC 2 cut(s) 158, 413
AspS9I GGNCC 4 cut(s) 79, 619, 768, 769
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 158, 349, 743
AvaII GGWCC 2 cut(s) 79, 619
BaeGI GKGCMC 2 cut(s) 434, 772
BalI TGGCCA 1 cut(s) 1131
BanII GRGCYC 1 cut(s) 772
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 434, 478
BbvI GCAGC 7 cut(s) 358, 391, 413, 454, 970, 1127, 1130
BccI CCATC 2 cut(s) 263, 962
BciT130I CCWGG 7 cut(s) 132, 285, 456, 864, 937, 968, 1023
BciVI GTATCC 1 cut(s) 1010
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 115, 630
BfaI CTAG 3 cut(s) 587, 689, 914
BfmI CTRYAG 4 cut(s) 95, 405, 778, 995
BfoI RGCGCY 1 cut(s) 414
BfuAI ACCTGC 2 cut(s) 746, 785
BfuI GTATCC 1 cut(s) 1010
BisI GCNGC 7 cut(s) 372, 402, 405, 468, 984, 1116, 1119
BlsI GCNGC 7 cut(s) 373, 403, 406, 469, 985, 1117, 1120
Bme1390I CCNGG 8 cut(s) 132, 194, 285, 456, 864, 937, 968, 1023
Bme18I GGWCC 2 cut(s) 79, 619
BmgT120I GGNCC 4 cut(s) 79, 619, 768, 769
BmiI GGNNCC 4 cut(s) 81, 620, 769, 770
BmrFI CCNGG 8 cut(s) 132, 194, 285, 456, 864, 937, 968, 1023
BmrI ACTGGG 2 cut(s) 490, 543
BmsI GCATC 5 cut(s) 109, 329, 683, 823, 959
BmuI ACTGGG 2 cut(s) 490, 543
BpmI CTGGAG 2 cut(s) 340, 885
BpuEI CTTGAG 2 cut(s) 563, 823
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 2 cut(s) 543, 643
BsaBI GATNNNNATC 1 cut(s) 1101
BsaJI CCNNGG 5 cut(s) 382, 862, 961, 1021, 1022
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 967
Bse118I RCCGGY 1 cut(s) 728
Bse1I ACTGG 3 cut(s) 485, 538, 1018
Bse3DI GCAATG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 1101
BseBI CCWGG 7 cut(s) 132, 285, 456, 864, 937, 968, 1023
BseDI CCNNGG 5 cut(s) 382, 862, 961, 1021, 1022
BseGI GGATG 3 cut(s) 698, 907, 950
BseJI GATNNNNATC 1 cut(s) 1101
BseLI CCNNNNNNNGG 2 cut(s) 192, 967
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 485, 538, 1018
BseRI GAGGAG 2 cut(s) 35, 43
BseSI GKGCMC 2 cut(s) 434, 772
BseXI GCAGC 7 cut(s) 358, 391, 413, 454, 970, 1127, 1130
BshFI GGCC 3 cut(s) 770, 966, 1131
BsiHKAI GWGCWC 2 cut(s) 434, 478
BsiSI CCGG 2 cut(s) 193, 729
BslFI GGGAC 4 cut(s) 65, 65, 807, 1069
BslI CCNNNNNNNGG 2 cut(s) 192, 967
BsmAI GTCTC 2 cut(s) 115, 630
BsmFI GGGAC 4 cut(s) 65, 65, 807, 1069
BsmI GAATGC 2 cut(s) 238, 322
BsnI GGCC 3 cut(s) 770, 966, 1131
Bsp120I GGGCCC 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 434, 478, 772
Bsp143I GATC 4 cut(s) 293, 757, 874, 1081
Bsp19I CCATGG 2 cut(s) 382, 961
BspACI CCGC 4 cut(s) 48, 143, 1064, 1113
BspANI GGCC 3 cut(s) 770, 966, 1131
BspCNI CTCAG 1 cut(s) 550
BspLI GGNNCC 4 cut(s) 81, 620, 769, 770
BspMAI CTGCAG 4 cut(s) 99, 409, 782, 999
BspMI ACCTGC 2 cut(s) 746, 785
BspPI GGATC 1 cut(s) 869
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 728
BsrI ACTGG 3 cut(s) 485, 538, 1018
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 5 cut(s) 382, 862, 961, 1021, 1022
BssMI GATC 4 cut(s) 293, 757, 874, 1081
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 382, 961
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 7 cut(s) 132, 285, 456, 864, 937, 968, 1023
Bst4CI ACNGT 3 cut(s) 45, 448, 664
BstBAI YACGTR 2 cut(s) 543, 643
BstC8I GCNNGC 2 cut(s) 99, 409
BstDEI CTNAG 2 cut(s) 397, 558
BstDSI CCRYGG 2 cut(s) 382, 961
BstEII GGTNACC 1 cut(s) 1108
BstF5I GGATG 3 cut(s) 698, 907, 950
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 158, 413
BstKTI GATC 4 cut(s) 296, 760, 877, 1084
BstMAI GTCTC 2 cut(s) 115, 630
BstMBI GATC 4 cut(s) 293, 757, 874, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 98, 317, 410, 473
BstNI CCWGG 7 cut(s) 132, 285, 456, 864, 937, 968, 1023
BstPI GGTNACC 1 cut(s) 1108
BstSCI CCNGG 8 cut(s) 130, 192, 283, 454, 862, 935, 966, 1021
BstSFI CTRYAG 4 cut(s) 95, 405, 778, 995
BstSLI GKGCMC 2 cut(s) 434, 772
BstV1I GCAGC 7 cut(s) 358, 391, 413, 454, 970, 1127, 1130
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 3 cut(s) 770, 966, 1131
BtgI CCRYGG 2 cut(s) 382, 961
BtsCI GGATG 3 cut(s) 698, 907, 950
BtsI GCAGTG 2 cut(s) 92, 787
BtsIMutI CAGTG 7 cut(s) 92, 186, 227, 478, 510, 787, 1092
BveI ACCTGC 2 cut(s) 746, 785
Cac8I GCNNGC 2 cut(s) 99, 409
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 2 cut(s) 158, 413
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 4 cut(s) 79, 619, 768, 769
CseI GACGC 1 cut(s) 857
Csp6I GTAC 2 cut(s) 857, 911
CviAII CATG 6 cut(s) 58, 383, 698, 962, 1037, 1127
CviQI GTAC 2 cut(s) 857, 911
DdeI CTNAG 2 cut(s) 397, 558
DpnI GATC 4 cut(s) 295, 759, 876, 1083
DpnII GATC 4 cut(s) 293, 757, 874, 1081
EaeI YGGCCR 1 cut(s) 1129
Eco130I CCWWGG 2 cut(s) 382, 961
Eco24I GRGCYC 1 cut(s) 772
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 79, 619
Eco91I GGTNACC 1 cut(s) 1108
EcoO109I RGGNCCY 2 cut(s) 619, 768
EcoO65I GGTNACC 1 cut(s) 1108
EcoRII CCWGG 7 cut(s) 130, 283, 454, 862, 935, 966, 1021
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 382, 961
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 2 cut(s) 382, 961
FaeI CATG 6 cut(s) 61, 386, 701, 965, 1040, 1130
FaqI GGGAC 4 cut(s) 65, 65, 807, 1069
FatI CATG 6 cut(s) 57, 382, 697, 961, 1036, 1126
FauI CCCGC 2 cut(s) 41, 136
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 7 cut(s) 372, 402, 405, 468, 984, 1116, 1119
FokI GGATG 3 cut(s) 705, 914, 937
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 7 cut(s) 372, 402, 405, 468, 984, 1116, 1119
FspBI CTAG 3 cut(s) 587, 689, 914
GlaI GCGC 2 cut(s) 157, 412
GluI GCNGC 7 cut(s) 372, 402, 405, 468, 984, 1116, 1119
GsuI CTGGAG 2 cut(s) 340, 885
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 3 cut(s) 770, 966, 1131
HapII CCGG 2 cut(s) 193, 729
HgaI GACGC 1 cut(s) 857
HhaI GCGC 2 cut(s) 158, 413
Hin1II CATG 6 cut(s) 61, 386, 701, 965, 1040, 1130
Hin6I GCGC 2 cut(s) 156, 411
HinP1I GCGC 2 cut(s) 156, 411
HinfI GANTC 6 cut(s) 108, 182, 206, 353, 824, 1072
HpaII CCGG 2 cut(s) 193, 729
HphI GGTGA 3 cut(s) 158, 349, 743
Hpy166II GTNNAC 3 cut(s) 186, 275, 432
Hpy188I TCNGA 3 cut(s) 12, 352, 675
Hpy188III TCNNGA 5 cut(s) 299, 357, 557, 761, 878
Hpy8I GTNNAC 3 cut(s) 186, 275, 432
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 2 cut(s) 609, 758
HpyCH4III ACNGT 3 cut(s) 45, 448, 664
HpyCH4IV ACGT 3 cut(s) 542, 642, 1058
HpyCH4V TGCA 9 cut(s) 97, 122, 236, 320, 407, 432, 780, 950, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 317, 410, 473
HpyF3I CTNAG 2 cut(s) 397, 558
HpySE526I ACGT 3 cut(s) 542, 642, 1058
Hsp92II CATG 6 cut(s) 61, 386, 701, 965, 1040, 1130
HspAI GCGC 2 cut(s) 156, 411
Kzo9I GATC 4 cut(s) 293, 757, 874, 1081
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 7 cut(s) 358, 391, 413, 454, 970, 1127, 1130
LweI GCATC 5 cut(s) 109, 329, 683, 823, 959
MaeI CTAG 3 cut(s) 587, 689, 914
MaeII ACGT 3 cut(s) 542, 642, 1058
MaeIII GTNAC 9 cut(s) 39, 215, 529, 538, 658, 842, 888, 1090, 1108
MalI GATC 4 cut(s) 295, 759, 876, 1083
MboI GATC 4 cut(s) 293, 757, 874, 1081
MboII GAAGA 4 cut(s) 74, 659, 733, 1015
MfeI CAATTG 2 cut(s) 366, 945
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 3 cut(s) 434, 478, 772
MlsI TGGCCA 1 cut(s) 1131
MluNI TGGCCA 1 cut(s) 1131
MlyI GAGTC 3 cut(s) 117, 191, 347
MmeI TCCRAC 1 cut(s) 467
Mox20I TGGCCA 1 cut(s) 1131
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 346
MscI TGGCCA 1 cut(s) 1131
MseI TTAA 6 cut(s) 174, 417, 681, 809, 1029, 1150
MslI CAYNNNNRTG 2 cut(s) 176, 702
Msp20I TGGCCA 1 cut(s) 1131
MspA1I CMGCKG 2 cut(s) 404, 815
MspI CCGG 2 cut(s) 193, 729
MspR9I CCNGG 8 cut(s) 132, 194, 285, 456, 864, 937, 968, 1023
MunI CAATTG 2 cut(s) 366, 945
Mva1269I GAATGC 2 cut(s) 238, 322
MvaI CCWGG 7 cut(s) 132, 285, 456, 864, 937, 968, 1023
MwoI GCNNNNNNNGC 4 cut(s) 98, 317, 410, 473
NciI CCSGG 1 cut(s) 194
NcoI CCATGG 2 cut(s) 382, 961
NdeII GATC 4 cut(s) 293, 757, 874, 1081
NlaIII CATG 6 cut(s) 61, 386, 701, 965, 1040, 1130
NlaIV GGNNCC 4 cut(s) 81, 620, 769, 770
NmuCI GTSAC 4 cut(s) 215, 538, 888, 1090
NsiI ATGCAT 1 cut(s) 322
PasI CCCWGGG 1 cut(s) 1022
PctI GAATGC 2 cut(s) 238, 322
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 206, 824, 1072
PflMI CCANNNNNTGG 1 cut(s) 967
PkrI GCNGC 7 cut(s) 373, 403, 406, 469, 985, 1117, 1120
PleI GAGTC 3 cut(s) 116, 190, 347
PpsI GAGTC 3 cut(s) 116, 190, 347
Ppu21I YACGTR 2 cut(s) 543, 643
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 7 cut(s) 130, 283, 454, 862, 935, 966, 1021
PspEI GGTNACC 1 cut(s) 1108
PspGI CCWGG 7 cut(s) 130, 283, 454, 862, 935, 966, 1021
PspN4I GGNNCC 4 cut(s) 81, 620, 769, 770
PspOMI GGGCCC 1 cut(s) 768
PspPI GGNCC 4 cut(s) 79, 619, 768, 769
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 4 cut(s) 99, 409, 782, 999
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 2 cut(s) 404, 815
RsaI GTAC 2 cut(s) 858, 912
RsaNI GTAC 2 cut(s) 857, 911
RseI CAYNNNNRTG 2 cut(s) 176, 702
SaqAI TTAA 6 cut(s) 174, 417, 681, 809, 1029, 1150
SatI GCNGC 7 cut(s) 372, 402, 405, 468, 984, 1116, 1119
Sau3AI GATC 4 cut(s) 293, 757, 874, 1081
Sau96I GGNCC 4 cut(s) 79, 619, 768, 769
SchI GAGTC 3 cut(s) 117, 191, 347
ScrFI CCNGG 8 cut(s) 132, 194, 285, 456, 864, 937, 968, 1023
SduI GDGCHC 3 cut(s) 434, 478, 772
SfaNI GCATC 5 cut(s) 109, 329, 683, 823, 959
SfcI CTRYAG 4 cut(s) 95, 405, 778, 995
SinI GGWCC 2 cut(s) 79, 619
SmiMI CAYNNNNRTG 2 cut(s) 176, 702
SmlI CTYRAG 2 cut(s) 578, 838
SmoI CTYRAG 2 cut(s) 578, 838
SsiI CCGC 4 cut(s) 48, 143, 1064, 1113
SspMI CTAG 3 cut(s) 587, 689, 914
StyD4I CCNGG 8 cut(s) 130, 192, 283, 454, 862, 935, 966, 1021
StyI CCWWGG 2 cut(s) 382, 961
TaaI ACNGT 3 cut(s) 45, 448, 664
TaiI ACGT 3 cut(s) 545, 645, 1061
TatI WGTACW 2 cut(s) 856, 910
TfiI GAWTC 3 cut(s) 206, 824, 1072
Tru1I TTAA 6 cut(s) 174, 417, 681, 809, 1029, 1150
Tru9I TTAA 6 cut(s) 174, 417, 681, 809, 1029, 1150
TscAI CASTG 7 cut(s) 99, 193, 234, 485, 510, 787, 1099
TseFI GTSAC 4 cut(s) 215, 538, 888, 1090
TseI GCWGC 7 cut(s) 371, 401, 404, 467, 983, 1115, 1118
Tsp45I GTSAC 4 cut(s) 215, 538, 888, 1090
TspDTI ATGAA 2 cut(s) 329, 553
TspGWI ACGGA 2 cut(s) 743, 817
TspRI CASTG 7 cut(s) 99, 193, 234, 485, 510, 787, 1099
Van91I CCANNNNNTGG 1 cut(s) 967
VneI GTGCAC 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 79, 619
XapI RAATTY 5 cut(s) 254, 344, 799, 972, 1007
XmiI GTMKAC 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 3 cut(s) 587, 689, 914
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.