Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1185000.v1.1 MD09G1185300.v1.1 |
| prunus_persica | Prupe.3G043100_v2.0.a1 |
| pyrus_communis | pycom09g10260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 63, 1433 |
| AccB1I | GGYRCC | 1 cut(s) | 1314 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 172 |
| AccBSI | CCGCTC | 1 cut(s) | 1178 |
| AccII | CGCG | 1 cut(s) | 628 |
| AciI | CCGC | 5 cut(s) | 160, 190, 628, 1176, 1553 |
| AclWI | GGATC | 2 cut(s) | 1072, 1358 |
| AcoI | YGGCCR | 2 cut(s) | 582, 1173 |
| AcsI | RAATTY | 1 cut(s) | 1124 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AcvI | CACGTG | 1 cut(s) | 1030 |
| AfaI | GTAC | 6 cut(s) | 46, 86, 525, 692, 985, 1424 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 172, 258, 445, 1098, 1195 |
| AgsI | TTSAA | 6 cut(s) | 28, 425, 603, 1415, 1543, 1685 |
| AjnI | CCWGG | 3 cut(s) | 205, 1254, 1666 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 806, 838 |
| AluBI | AGCT | 5 cut(s) | 971, 980, 1330, 1411, 1677 |
| AluI | AGCT | 5 cut(s) | 971, 980, 1330, 1411, 1677 |
| Alw21I | GWGCWC | 3 cut(s) | 406, 1332, 1371 |
| Alw26I | GTCTC | 3 cut(s) | 37, 424, 1277 |
| AlwI | GGATC | 2 cut(s) | 1072, 1358 |
| Ama87I | CYCGRG | 1 cut(s) | 1338 |
| AoxI | GGCC | 3 cut(s) | 582, 1173, 1197 |
| ApeKI | GCWGC | 6 cut(s) | 652, 860, 1010, 1408, 1451, 1526 |
| ApoI | RAATTY | 1 cut(s) | 1124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1217 |
| AspLEI | GCGC | 3 cut(s) | 628, 1166, 1487 |
| AspS9I | GGNCC | 2 cut(s) | 276, 1197 |
| AsuC2I | CCSGG | 1 cut(s) | 350 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 367, 716, 1639 |
| AsuII | TTCGAA | 1 cut(s) | 825 |
| AvaI | CYCGRG | 1 cut(s) | 1338 |
| AvaII | GGWCC | 1 cut(s) | 276 |
| BanI | GGYRCC | 1 cut(s) | 1314 |
| BanII | GRGCYC | 2 cut(s) | 1332, 1475 |
| BauI | CACGAG | 1 cut(s) | 405 |
| BbrPI | CACGTG | 1 cut(s) | 1030 |
| BbsI | GAAGAC | 1 cut(s) | 1336 |
| Bbv12I | GWGCWC | 3 cut(s) | 406, 1332, 1371 |
| BbvI | GCAGC | 6 cut(s) | 664, 872, 1022, 1420, 1438, 1538 |
| BccI | CCATC | 7 cut(s) | 332, 373, 547, 601, 610, 832, 1165 |
| BceAI | ACGGC | 2 cut(s) | 597, 732 |
| BciT130I | CCWGG | 3 cut(s) | 207, 1256, 1668 |
| BciVI | GTATCC | 1 cut(s) | 1075 |
| BclI | TGATCA | 1 cut(s) | 307 |
| BcnI | CCSGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 3 cut(s) | 37, 424, 1277 |
| BfoI | RGCGCY | 1 cut(s) | 1488 |
| BfuI | GTATCC | 1 cut(s) | 1075 |
| BisI | GCNGC | 9 cut(s) | 191, 653, 861, 1011, 1176, 1409, 1452, 1527, 1553 |
| BlsI | GCNGC | 9 cut(s) | 192, 654, 862, 1012, 1177, 1410, 1453, 1528, 1554 |
| Bme1390I | CCNGG | 4 cut(s) | 207, 350, 1256, 1668 |
| Bme18I | GGWCC | 1 cut(s) | 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 1338 |
| BmgT120I | GGNCC | 2 cut(s) | 276, 1197 |
| BmiI | GGNNCC | 3 cut(s) | 194, 263, 1316 |
| BmrFI | CCNGG | 4 cut(s) | 207, 350, 1256, 1668 |
| BmsI | GCATC | 9 cut(s) | 520, 835, 857, 1195, 1218, 1447, 1543, 1549, 1606 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1340 |
| BpiI | GAAGAC | 1 cut(s) | 1336 |
| Bpu14I | TTCGAA | 1 cut(s) | 825 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BpuMI | CCSGG | 1 cut(s) | 350 |
| BsaAI | YACGTR | 2 cut(s) | 1030, 1361 |
| BsaI | GGTCTC | 2 cut(s) | 37, 1277 |
| BsaJI | CCNNGG | 4 cut(s) | 205, 585, 1189, 1200 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 172, 258, 445, 1098, 1195 |
| Bse1I | ACTGG | 2 cut(s) | 265, 531 |
| Bse3DI | GCAATG | 3 cut(s) | 805, 870, 1536 |
| BseBI | CCWGG | 3 cut(s) | 207, 1256, 1668 |
| BseDI | CCNNGG | 4 cut(s) | 205, 585, 1189, 1200 |
| BseGI | GGATG | 7 cut(s) | 535, 558, 562, 1046, 1210, 1618, 1676 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 172, 258, 445, 1098, 1195 |
| BseMI | GCAATG | 3 cut(s) | 805, 870, 1536 |
| BseMII | CTCAG | 3 cut(s) | 896, 1236, 1611 |
| BseNI | ACTGG | 2 cut(s) | 265, 531 |
| BseRI | GAGGAG | 1 cut(s) | 1265 |
| BseXI | GCAGC | 6 cut(s) | 664, 872, 1022, 1420, 1438, 1538 |
| BseYI | CCCAGC | 2 cut(s) | 686, 1403 |
| BsgI | GTGCAG | 3 cut(s) | 399, 473, 474 |
| Bsh1236I | CGCG | 1 cut(s) | 628 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BshFI | GGCC | 3 cut(s) | 584, 1175, 1199 |
| BshNI | GGYRCC | 1 cut(s) | 1314 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BsiHKAI | GWGCWC | 3 cut(s) | 406, 1332, 1371 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1338 |
| BsiSI | CCGG | 2 cut(s) | 349, 1563 |
| BslFI | GGGAC | 2 cut(s) | 551, 1115 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 172, 258, 445, 1098, 1195 |
| BsmAI | GTCTC | 3 cut(s) | 37, 424, 1277 |
| BsmFI | GGGAC | 2 cut(s) | 551, 1115 |
| BsmI | GAATGC | 1 cut(s) | 1087 |
| BsnI | GGCC | 3 cut(s) | 584, 1175, 1199 |
| Bso31I | GGTCTC | 2 cut(s) | 37, 1277 |
| BsoBI | CYCGRG | 1 cut(s) | 1338 |
| Bsp119I | TTCGAA | 1 cut(s) | 825 |
| Bsp1286I | GDGCHC | 4 cut(s) | 406, 1332, 1371, 1475 |
| Bsp1407I | TGTACA | 1 cut(s) | 983 |
| Bsp143I | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| Bsp19I | CCATGG | 2 cut(s) | 585, 1189 |
| BspACI | CCGC | 5 cut(s) | 160, 190, 628, 1176, 1553 |
| BspANI | GGCC | 3 cut(s) | 584, 1175, 1199 |
| BspCNI | CTCAG | 3 cut(s) | 895, 1235, 1612 |
| BspFNI | CGCG | 1 cut(s) | 628 |
| BspHI | TCATGA | 2 cut(s) | 304, 1332 |
| BspLI | GGNNCC | 3 cut(s) | 194, 263, 1316 |
| BspPI | GGATC | 2 cut(s) | 1072, 1358 |
| BspT104I | TTCGAA | 1 cut(s) | 825 |
| BspT107I | GGYRCC | 1 cut(s) | 1314 |
| BspTNI | GGTCTC | 2 cut(s) | 37, 1277 |
| BsrBI | CCGCTC | 1 cut(s) | 1178 |
| BsrDI | GCAATG | 3 cut(s) | 805, 870, 1536 |
| BsrGI | TGTACA | 1 cut(s) | 983 |
| BsrI | ACTGG | 2 cut(s) | 265, 531 |
| BssECI | CCNNGG | 4 cut(s) | 205, 585, 1189, 1200 |
| BssMI | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| BssSI | CACGAG | 1 cut(s) | 405 |
| BssT1I | CCWWGG | 2 cut(s) | 585, 1189 |
| Bst2BI | CACGAG | 1 cut(s) | 405 |
| Bst2UI | CCWGG | 3 cut(s) | 207, 1256, 1668 |
| Bst4CI | ACNGT | 1 cut(s) | 946 |
| Bst6I | CTCTTC | 3 cut(s) | 388, 822, 1544 |
| BstAUI | TGTACA | 1 cut(s) | 983 |
| BstBAI | YACGTR | 2 cut(s) | 1030, 1361 |
| BstBI | TTCGAA | 1 cut(s) | 825 |
| BstC8I | GCNNGC | 2 cut(s) | 1378, 1489 |
| BstDEI | CTNAG | 3 cut(s) | 882, 1222, 1620 |
| BstDSI | CCRYGG | 2 cut(s) | 585, 1189 |
| BstF5I | GGATG | 7 cut(s) | 535, 558, 562, 1046, 1210, 1618, 1676 |
| BstFNI | CGCG | 1 cut(s) | 628 |
| BstH2I | RGCGCY | 1 cut(s) | 1488 |
| BstHHI | GCGC | 3 cut(s) | 628, 1166, 1487 |
| BstKTI | GATC | 4 cut(s) | 310, 1080, 1353, 1524 |
| BstMAI | GTCTC | 3 cut(s) | 37, 424, 1277 |
| BstMBI | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstNI | CCWGG | 3 cut(s) | 207, 1256, 1668 |
| BstNSI | RCATGY | 2 cut(s) | 402, 1287 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1340 |
| BstSCI | CCNGG | 4 cut(s) | 205, 348, 1254, 1666 |
| BstUI | CGCG | 1 cut(s) | 628 |
| BstV1I | GCAGC | 6 cut(s) | 664, 872, 1022, 1420, 1438, 1538 |
| BstV2I | GAAGAC | 1 cut(s) | 1336 |
| BsuI | GTATCC | 1 cut(s) | 1075 |
| BsuRI | GGCC | 3 cut(s) | 584, 1175, 1199 |
| BtgI | CCRYGG | 2 cut(s) | 585, 1189 |
| BtsCI | GGATG | 7 cut(s) | 535, 558, 562, 1046, 1210, 1618, 1676 |
| BtsIMutI | CAGTG | 1 cut(s) | 762 |
| Cac8I | GCNNGC | 2 cut(s) | 1378, 1489 |
| CciI | TCATGA | 2 cut(s) | 304, 1332 |
| CfoI | GCGC | 3 cut(s) | 628, 1166, 1487 |
| Cfr13I | GGNCC | 2 cut(s) | 276, 1197 |
| CsiI | ACCWGGT | 1 cut(s) | 1254 |
| Csp6I | GTAC | 6 cut(s) | 45, 85, 524, 691, 984, 1423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1011, 1046 |
| CviQI | GTAC | 6 cut(s) | 45, 85, 524, 691, 984, 1423 |
| DdeI | CTNAG | 3 cut(s) | 882, 1222, 1620 |
| DpnI | GATC | 4 cut(s) | 309, 1079, 1352, 1523 |
| DpnII | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| EaeI | YGGCCR | 2 cut(s) | 582, 1173 |
| Eam1104I | CTCTTC | 3 cut(s) | 388, 822, 1544 |
| EarI | CTCTTC | 3 cut(s) | 388, 822, 1544 |
| Ecl136II | GAGCTC | 1 cut(s) | 1330 |
| Eco130I | CCWWGG | 2 cut(s) | 585, 1189 |
| Eco24I | GRGCYC | 2 cut(s) | 1332, 1475 |
| Eco31I | GGTCTC | 2 cut(s) | 37, 1277 |
| Eco32I | GATATC | 1 cut(s) | 777 |
| Eco47I | GGWCC | 1 cut(s) | 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 1330 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| Eco72I | CACGTG | 1 cut(s) | 1030 |
| Eco88I | CYCGRG | 1 cut(s) | 1338 |
| EcoICRI | GAGCTC | 1 cut(s) | 1330 |
| EcoRII | CCWGG | 3 cut(s) | 205, 1254, 1666 |
| EcoRV | GATATC | 1 cut(s) | 777 |
| EcoT14I | CCWWGG | 2 cut(s) | 585, 1189 |
| EcoT22I | ATGCAT | 6 cut(s) | 400, 850, 1075, 1089, 1285, 1536 |
| EcoT38I | GRGCYC | 2 cut(s) | 1332, 1475 |
| ErhI | CCWWGG | 2 cut(s) | 585, 1189 |
| FaqI | GGGAC | 2 cut(s) | 551, 1115 |
| FauNDI | CATATG | 2 cut(s) | 501, 1083 |
| FbaI | TGATCA | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 9 cut(s) | 191, 653, 861, 1011, 1176, 1409, 1452, 1527, 1553 |
| FokI | GGATG | 7 cut(s) | 542, 565, 569, 1053, 1217, 1625, 1683 |
| FriOI | GRGCYC | 2 cut(s) | 1332, 1475 |
| Fsp4HI | GCNGC | 9 cut(s) | 191, 653, 861, 1011, 1176, 1409, 1452, 1527, 1553 |
| GlaI | GCGC | 3 cut(s) | 627, 1165, 1486 |
| GluI | GCNGC | 9 cut(s) | 191, 653, 861, 1011, 1176, 1409, 1452, 1527, 1553 |
| GsaI | CCCAGC | 2 cut(s) | 690, 1407 |
| HaeII | RGCGCY | 1 cut(s) | 1488 |
| HaeIII | GGCC | 3 cut(s) | 584, 1175, 1199 |
| HapII | CCGG | 2 cut(s) | 349, 1563 |
| HhaI | GCGC | 3 cut(s) | 628, 1166, 1487 |
| Hin6I | GCGC | 3 cut(s) | 626, 1164, 1485 |
| HinP1I | GCGC | 3 cut(s) | 626, 1164, 1485 |
| HincII | GTYRAC | 1 cut(s) | 1387 |
| HindII | GTYRAC | 1 cut(s) | 1387 |
| HinfI | GANTC | 3 cut(s) | 752, 1213, 1336 |
| HpaII | CCGG | 2 cut(s) | 349, 1563 |
| HphI | GGTGA | 4 cut(s) | 64, 367, 716, 1639 |
| Hpy166II | GTNNAC | 4 cut(s) | 375, 439, 986, 1387 |
| Hpy188I | TCNGA | 3 cut(s) | 885, 1145, 1225 |
| Hpy188III | TCNNGA | 3 cut(s) | 305, 1333, 1348 |
| Hpy8I | GTNNAC | 4 cut(s) | 375, 439, 986, 1387 |
| Hpy99I | CGWCG | 1 cut(s) | 1271 |
| HpyAV | CCTTC | 9 cut(s) | 34, 227, 388, 419, 1031, 1188, 1232, 1304, 1392 |
| HpyCH4III | ACNGT | 1 cut(s) | 946 |
| HpyCH4IV | ACGT | 3 cut(s) | 87, 1029, 1360 |
| HpyF3I | CTNAG | 3 cut(s) | 882, 1222, 1620 |
| HpySE526I | ACGT | 3 cut(s) | 87, 1029, 1360 |
| HspAI | GCGC | 3 cut(s) | 626, 1164, 1485 |
| Ksp22I | TGATCA | 1 cut(s) | 307 |
| Kzo9I | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| LmnI | GCTCC | 4 cut(s) | 198, 649, 968, 1366 |
| Lsp1109I | GCAGC | 6 cut(s) | 664, 872, 1022, 1420, 1438, 1538 |
| LweI | GCATC | 9 cut(s) | 520, 835, 857, 1195, 1218, 1447, 1543, 1549, 1606 |
| MabI | ACCWGGT | 1 cut(s) | 1254 |
| MaeII | ACGT | 3 cut(s) | 87, 1029, 1360 |
| MaeIII | GTNAC | 2 cut(s) | 940, 1258 |
| MalI | GATC | 4 cut(s) | 309, 1079, 1352, 1523 |
| MbiI | CCGCTC | 1 cut(s) | 1178 |
| MboI | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| MboII | GAAGA | 7 cut(s) | 59, 375, 488, 839, 944, 1336, 1531 |
| MhlI | GDGCHC | 4 cut(s) | 406, 1332, 1371, 1475 |
| MluCI | AATT | 4 cut(s) | 725, 1124, 1511, 1567 |
| MlyI | GAGTC | 1 cut(s) | 1330 |
| MmeI | TCCRAC | 1 cut(s) | 946 |
| Mph1103I | ATGCAT | 6 cut(s) | 400, 850, 1075, 1089, 1285, 1536 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1217 |
| MseI | TTAA | 2 cut(s) | 111, 1128 |
| MslI | CAYNNNNRTG | 3 cut(s) | 294, 504, 911 |
| MspI | CCGG | 2 cut(s) | 349, 1563 |
| MspR9I | CCNGG | 4 cut(s) | 207, 350, 1256, 1668 |
| Mva1269I | GAATGC | 1 cut(s) | 1087 |
| MvaI | CCWGG | 3 cut(s) | 207, 1256, 1668 |
| MvnI | CGCG | 1 cut(s) | 628 |
| NciI | CCSGG | 1 cut(s) | 350 |
| NcoI | CCATGG | 2 cut(s) | 585, 1189 |
| NdeI | CATATG | 2 cut(s) | 501, 1083 |
| NdeII | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| NlaIV | GGNNCC | 3 cut(s) | 194, 263, 1316 |
| NmeAIII | GCCGAG | 1 cut(s) | 1225 |
| NmuCI | GTSAC | 1 cut(s) | 940 |
| NsiI | ATGCAT | 6 cut(s) | 400, 850, 1075, 1089, 1285, 1536 |
| NspI | RCATGY | 2 cut(s) | 402, 1287 |
| NspV | TTCGAA | 1 cut(s) | 825 |
| PagI | TCATGA | 2 cut(s) | 304, 1332 |
| PctI | GAATGC | 1 cut(s) | 1087 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1217 |
| PfeI | GAWTC | 2 cut(s) | 752, 1213 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 172 |
| PfoI | TCCNGGA | 1 cut(s) | 1666 |
| PkrI | GCNGC | 9 cut(s) | 192, 654, 862, 1012, 1177, 1410, 1453, 1528, 1554 |
| PleI | GAGTC | 1 cut(s) | 1330 |
| PmaCI | CACGTG | 1 cut(s) | 1030 |
| PmlI | CACGTG | 1 cut(s) | 1030 |
| PpsI | GAGTC | 1 cut(s) | 1330 |
| Ppu21I | YACGTR | 2 cut(s) | 1030, 1361 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1340 |
| PsiI | TTATAA | 2 cut(s) | 63, 1433 |
| Psp124BI | GAGCTC | 1 cut(s) | 1332 |
| Psp6I | CCWGG | 3 cut(s) | 205, 1254, 1666 |
| PspCI | CACGTG | 1 cut(s) | 1030 |
| PspFI | CCCAGC | 2 cut(s) | 686, 1403 |
| PspGI | CCWGG | 3 cut(s) | 205, 1254, 1666 |
| PspN4I | GGNNCC | 3 cut(s) | 194, 263, 1316 |
| PspPI | GGNCC | 2 cut(s) | 276, 1197 |
| RsaI | GTAC | 6 cut(s) | 46, 86, 525, 692, 985, 1424 |
| RsaNI | GTAC | 6 cut(s) | 45, 85, 524, 691, 984, 1423 |
| RseI | CAYNNNNRTG | 3 cut(s) | 294, 504, 911 |
| SacI | GAGCTC | 1 cut(s) | 1332 |
| SaqAI | TTAA | 2 cut(s) | 111, 1128 |
| SatI | GCNGC | 9 cut(s) | 191, 653, 861, 1011, 1176, 1409, 1452, 1527, 1553 |
| Sau3AI | GATC | 4 cut(s) | 307, 1077, 1350, 1521 |
| Sau96I | GGNCC | 2 cut(s) | 276, 1197 |
| SchI | GAGTC | 1 cut(s) | 1330 |
| ScrFI | CCNGG | 4 cut(s) | 207, 350, 1256, 1668 |
| SduI | GDGCHC | 4 cut(s) | 406, 1332, 1371, 1475 |
| SexAI | ACCWGGT | 1 cut(s) | 1254 |
| SfaNI | GCATC | 9 cut(s) | 520, 835, 857, 1195, 1218, 1447, 1543, 1549, 1606 |
| SfuI | TTCGAA | 1 cut(s) | 825 |
| SinI | GGWCC | 1 cut(s) | 276 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 294, 504, 911 |
| SmlI | CTYRAG | 1 cut(s) | 185 |
| SmoI | CTYRAG | 1 cut(s) | 185 |
| Sse9I | AATT | 4 cut(s) | 725, 1124, 1511, 1567 |
| SsiI | CCGC | 5 cut(s) | 160, 190, 628, 1176, 1553 |
| SspI | AATATT | 1 cut(s) | 1322 |
| SstI | GAGCTC | 1 cut(s) | 1332 |
| StyD4I | CCNGG | 4 cut(s) | 205, 348, 1254, 1666 |
| StyI | CCWWGG | 2 cut(s) | 585, 1189 |
| TaaI | ACNGT | 1 cut(s) | 946 |
| TaiI | ACGT | 3 cut(s) | 90, 1032, 1363 |
| TaqI | TCGA | 3 cut(s) | 240, 825, 1353 |
| TaqII | GACCGA | 3 cut(s) | 258, 1259, 1264 |
| TasI | AATT | 4 cut(s) | 725, 1124, 1511, 1567 |
| TatI | WGTACW | 2 cut(s) | 523, 983 |
| TauI | GCSGC | 3 cut(s) | 193, 1178, 1555 |
| TfiI | GAWTC | 2 cut(s) | 752, 1213 |
| Tru1I | TTAA | 2 cut(s) | 111, 1128 |
| Tru9I | TTAA | 2 cut(s) | 111, 1128 |
| TscAI | CASTG | 1 cut(s) | 762 |
| TseFI | GTSAC | 1 cut(s) | 940 |
| TseI | GCWGC | 6 cut(s) | 652, 860, 1010, 1408, 1451, 1526 |
| Tsp45I | GTSAC | 1 cut(s) | 940 |
| TspDTI | ATGAA | 7 cut(s) | 4, 293, 488, 747, 1017, 1226, 1487 |
| TspRI | CASTG | 1 cut(s) | 762 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 1 cut(s) | 276 |
| XapI | RAATTY | 1 cut(s) | 1124 |
| XceI | RCATGY | 2 cut(s) | 402, 1287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1217 |
| Zsp2I | ATGCAT | 6 cut(s) | 400, 850, 1075, 1089, 1285, 1536 |