Prupe.3G160000_v2.0.a1

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0022450
Physical Location & Seq
Reverse (-)
17881837 .. 17883401
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G160000.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 483 bp
ATGGCGGCCCAGCATAAGAACCCGCAGATTGAGAATGTTGTGATGATGCTTCCCTCGAGCATTCGCTGCAGCTGTTGTAGCACTGTCATGGCCAAAGGCACCAAGTTCAATTCCCGCAAAGAAGAAACCCTCGGCGAGGTACTTACTTGGGATCACACATTCAGATTTTGTTTCAATTGTACCCAGTTCTCAGCCGAGATCGTCATAAGGACAGACCCACAATGTTCACACCTTGCTGTTGAGGCTGGTGCTTCGAAATTTTATAAGAAGTTGGTTCCTTGCACGGGCCCAAACTGGCAAGAGAAAAGAGAAGAGGTCTTAGCTAACAGGAAAAGGAAGATTGAAGAAGTGGGAGACGCCATGAAATCTTTGGATTTCAAAAGAGAGATGGACAACCCTGACGCTGTGGATGTGATTACGCATGCGACTTTGAGTGAGAATGCTTCGTTGGAGGCTTTACAACAAAGAGCTACAGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

6.89

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022450)

Species Orthologous Gene IDs
prunus_persica Prupe.2G218500_v2.0.a1 Prupe.3G160000_v2.0.a1 Prupe.4G012700_v2.0.a1 Prupe.4G015800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 3 cut(s) 5, 23, 115
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 2 cut(s) 141, 181
AfiI CCNNNNNNNGG 2 cut(s) 136, 284
AgsI TTSAA 4 cut(s) 109, 175, 344, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 3 cut(s) 72, 323, 470
AluI AGCT 3 cut(s) 72, 323, 470
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 3 cut(s) 6, 90, 286
ApaI GGGCCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 66, 69
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 7, 286, 287
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 53, 81
BccI CCATC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 348
BfmI CTRYAG 2 cut(s) 67, 471
BisI GCNGC 3 cut(s) 6, 67, 70
BlsI GCNGC 3 cut(s) 7, 68, 71
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 7, 286, 287
BmiI GGNNCC 3 cut(s) 100, 276, 288
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 284
Bse1I ACTGG 2 cut(s) 184, 299
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 136, 284
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 184, 299
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 2 cut(s) 53, 81
BseYI CCCAGC 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 92, 288
BshNI GGYRCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 136, 284
BsmAI GTCTC 1 cut(s) 348
BsmBI CGTCTC 1 cut(s) 348
BsmI GAATGC 2 cut(s) 60, 445
BsnI GGCC 3 cut(s) 8, 92, 288
BsoBI CYCGRG 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 254
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 2 cut(s) 151, 198
BspACI CCGC 3 cut(s) 5, 23, 115
BspANI GGCC 3 cut(s) 8, 92, 288
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 100, 276, 288
BspMAI CTGCAG 1 cut(s) 71
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 184, 299
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 151, 198
BssNI GRCGYC 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 190, 319
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 415
BstKTI GATC 2 cut(s) 154, 201
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 151, 198
BstMWI GCNNNNNNNGC 3 cut(s) 66, 78, 242
BstNSI RCATGY 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 67, 471
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 53, 81
BsuRI GGCC 3 cut(s) 8, 92, 288
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 3 cut(s) 7, 286, 287
CseI GACGC 2 cut(s) 365, 410
Csp6I GTAC 2 cut(s) 140, 180
CviAII CATG 3 cut(s) 88, 361, 422
CviJI RGCY 9 cut(s) 8, 72, 92, 194, 245, 288, 323, 455, 470
CviKI_1 RGCY 9 cut(s) 8, 72, 92, 194, 245, 288, 323, 455, 470
CviQI GTAC 2 cut(s) 140, 180
DdeI CTNAG 2 cut(s) 190, 319
DpnI GATC 2 cut(s) 153, 200
DpnII GATC 2 cut(s) 151, 198
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 3 cut(s) 91, 364, 425
FaiI YATR 6 cut(s) 15, 89, 206, 264, 362, 423
FatI CATG 3 cut(s) 87, 360, 421
FauI CCCGC 2 cut(s) 30, 122
Fnu4HI GCNGC 3 cut(s) 6, 67, 70
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 6, 67, 70
GluI GCNGC 3 cut(s) 6, 67, 70
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 3 cut(s) 8, 92, 288
HgaI GACGC 2 cut(s) 365, 410
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 3 cut(s) 91, 364, 425
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 69, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 78, 242
HpyF3I CTNAG 2 cut(s) 190, 319
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 3 cut(s) 91, 364, 425
Kzo9I GATC 2 cut(s) 151, 198
LpnPI CCDG 7 cut(s) 23, 197, 231, 280, 313, 411, 459
Lsp1109I GCAGC 2 cut(s) 53, 81
LweI GCATC 1 cut(s) 36
MalI GATC 2 cut(s) 153, 200
MboI GATC 2 cut(s) 151, 198
MboII GAAGA 4 cut(s) 134, 323, 349, 356
MfeI CAATTG 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 4 cut(s) 109, 175, 257, 478
MluNI TGGCCA 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 6 cut(s) 64, 130, 140, 235, 307, 445
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 72
MunI CAATTG 1 cut(s) 175
Mva1269I GAATGC 2 cut(s) 60, 445
MwoI GCNNNNNNNGC 3 cut(s) 66, 78, 242
NdeII GATC 2 cut(s) 151, 198
NlaIII CATG 3 cut(s) 91, 364, 425
NlaIV GGNNCC 3 cut(s) 100, 276, 288
NmeAIII GCCGAG 2 cut(s) 111, 220
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 1 cut(s) 254
PaeI GCATGC 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 55
PctI GAATGC 2 cut(s) 60, 445
PkrI GCNGC 3 cut(s) 7, 68, 71
PsiI TTATAA 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 100, 276, 288
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 3 cut(s) 7, 286, 287
PspXI VCTCGAGB 1 cut(s) 55
PstI CTGCAG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 72
RsaI GTAC 2 cut(s) 141, 181
RsaNI GTAC 2 cut(s) 140, 180
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 3 cut(s) 6, 67, 70
Sau3AI GATC 2 cut(s) 151, 198
Sau96I GGNCC 3 cut(s) 7, 286, 287
SduI GDGCHC 1 cut(s) 290
SetI ASST 6 cut(s) 74, 141, 234, 318, 325, 472
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 2 cut(s) 67, 471
Sfr274I CTCGAG 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SphI GCATGC 1 cut(s) 425
Sse9I AATT 4 cut(s) 109, 175, 257, 478
SsiI CCGC 3 cut(s) 5, 23, 115
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 56, 254
TasI AATT 4 cut(s) 109, 175, 257, 478
TauI GCSGC 1 cut(s) 8
TscAI CASTG 1 cut(s) 88
TseI GCWGC 2 cut(s) 66, 69
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.