Prupe.4G015800_v2.0.a1

mRNA splicing, via spliceosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0022450
Physical Location & Seq
Reverse (-)
745020 .. 746789
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G015800.1

Sequence Viewer

Length: 276 bp
ATGGCGGCCCGGCGTAAGAACCCGCAGATTGAGAATGTTCTGATGAGGCTTCCCTCAAGCATTCGCTGCACCGCTTGTAGCACTGTCATGGCCAAAGACACCAAGTTGAATTCCCGCAAAGAAGAAGCCCTCGGCGAGGAGTTTTGGGAGGTTTGGAAGGATCACACATTCAGATTTTGCTTCAGCTGTACCCACTGCTTGGCTGAGATTGTCATAAGGACAGACCCACAATATTCACACCTTACTGTTGAGGCCGGTGCTTTTGAAATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

92

Amino Acids

10.51

Weight (kDa)

6.81

Isoelectric Point (pI)

60.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022450)

Species Orthologous Gene IDs
prunus_persica Prupe.2G218500_v2.0.a1 Prupe.3G160000_v2.0.a1 Prupe.4G012700_v2.0.a1 Prupe.4G015800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 4 cut(s) 5, 23, 72, 115
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 2 cut(s) 109, 267
AcuI CTGAAG 1 cut(s) 166
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 136, 199
AgsI TTSAA 2 cut(s) 109, 266
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
AlwI GGATC 1 cut(s) 168
AoxI GGCC 3 cut(s) 6, 90, 252
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 109, 267
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 10
BalI TGGCCA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 10
BisI GCNGC 2 cut(s) 6, 67
BlsI GCNGC 2 cut(s) 7, 68
Bme1390I CCNGG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 199
Bse118I RCCGGY 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 136, 199
BseMII CTCAG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 3 cut(s) 8, 92, 254
BsiSI CCGG 2 cut(s) 10, 255
BslI CCNNNNNNNGG 2 cut(s) 136, 199
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 3 cut(s) 8, 92, 254
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 4 cut(s) 5, 23, 72, 115
BspANI GGCC 3 cut(s) 8, 92, 254
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 85, 247
BstAPI GCANNNNNTGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 134
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 53
BsuRI GGCC 3 cut(s) 8, 92, 254
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 81, 193
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 88
CviJI RGCY 7 cut(s) 8, 49, 92, 128, 186, 203, 254
CviKI_1 RGCY 7 cut(s) 8, 49, 92, 128, 186, 203, 254
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 109
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 215, 274
FatI CATG 1 cut(s) 87
FauI CCCGC 2 cut(s) 30, 122
Fnu4HI GCNGC 2 cut(s) 6, 67
Fsp4HI GCNGC 2 cut(s) 6, 67
GluI GCNGC 2 cut(s) 6, 67
HaeIII GGCC 3 cut(s) 8, 92, 254
HapII CCGG 2 cut(s) 10, 255
Hin1II CATG 1 cut(s) 91
HpaII CCGG 2 cut(s) 10, 255
Hpy188I TCNGA 2 cut(s) 42, 173
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 85, 247
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 23, 268
Lsp1109I GCAGC 1 cut(s) 53
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 109, 267
MluNI TGGCCA 1 cut(s) 92
MnlI CCTC 6 cut(s) 39, 64, 130, 140, 142, 244
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 2 cut(s) 10, 255
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 10
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 111
PctI GAATGC 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 2 cut(s) 7, 68
PspPI GGNCC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 2 cut(s) 6, 67
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 153, 188, 243
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 109, 267
SsiI CCGC 4 cut(s) 5, 23, 72, 115
SspI AATATT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 85, 247
TasI AATT 2 cut(s) 109, 267
TauI GCSGC 1 cut(s) 8
TscAI CASTG 2 cut(s) 88, 200
TseI GCWGC 1 cut(s) 66
TspRI CASTG 2 cut(s) 88, 200
Van91I CCANNNNNTGG 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 2 cut(s) 109, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.