Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0022415

Physical Location & Seq

Genomic Coordinates Reverse (-)

18165776 .. 18167110

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTGAAGAGGAGGAATGTTTTAGAGAGAACTACGTCACAGCAGAAGCATAAGAAGATCAACAATAATGAAGTTCACAGTGTGAAGAAAAACAGGTTTTTGATCACAGTGAATGTTGTTGGAAGCACAGGGCCAATAAGGTTTGTGGTGAATGAAGATGATCTTGTTGCTGGGGTCATCGACACTGCTCTCAAGTCCTACGCTCGTGAAGGCCGCCTACCACTTCTTGGTTCCGATGTCAAGGATTTCCTTCTCTACTGCGCTAATGCAGGATCCGACGCCTTAAGTCCATGGGAAAGTATAGGATCTCATGGGGGAAGGAACTTTGTGCTGAGCAAGAAGCAGAGGGCAGTGCAGAATGTTACAGAGAGAAAGCCAGAGATGACAGCTCCAAAGGGATCAGTTAGTAGCTGGAAGGCATGGCTCAATAAATCATTTCCTTTCAAGATATCATCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.08

Weight (kDa)

10.15

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022415)

Species	Orthologous Gene IDs
malus_domestica	MD17G1260800.v1.1
prunus_persica	Prupe.3G162600_v2.0.a1
pyrus_communis	pycom09g17850 pycom17g26150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	4 cut(s)	267, 280, 313, 406
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	445
AluBI	AGCT	2 cut(s)	389, 411
AluI	AGCT	2 cut(s)	389, 411
AlwI	GGATC	4 cut(s)	267, 280, 313, 406
AoxI	GGCC	2 cut(s)	131, 211
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BauI	CACGAG	1 cut(s)	204
BclI	TGATCA	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	232, 274
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	133, 213
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	2 cut(s)	133, 213
Bsp143I	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
Bsp1720I	GCTNAGC	1 cut(s)	332
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	133, 213
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	232, 274
BspPI	GGATC	4 cut(s)	267, 280, 313, 406
BspTI	CTTAAG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	80, 109
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	6 cut(s)	60, 105, 163, 275, 308, 401
BstMBI	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
BstX2I	RGATCY	2 cut(s)	272, 305
BstYI	RGATCY	2 cut(s)	272, 305
BsuRI	GGCC	2 cut(s)	133, 213
BtgI	CCRYGG	1 cut(s)	290
BtsI	GCAGTG	2 cut(s)	183, 357
BtsIMutI	CAGTG	5 cut(s)	85, 114, 183, 357, 457
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	287
CviAII	CATG	3 cut(s)	291, 311, 420
CviJI	RGCY	6 cut(s)	133, 213, 376, 389, 411, 424
CviKI_1	RGCY	6 cut(s)	133, 213, 376, 389, 411, 424
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	6 cut(s)	59, 104, 162, 274, 307, 400
DpnII	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
DraIII	CACNNNGTG	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	3 cut(s)	294, 314, 423
FaiI	YATR	5 cut(s)	51, 292, 302, 312, 421
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	290, 310, 419
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	214
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	133, 213
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	294, 314, 423
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	235, 277
Hpy188III	TCNNGA	2 cut(s)	206, 445
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	203, 260, 312, 409
HpyCH4III	ACNGT	2 cut(s)	80, 109
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	269, 355
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	294, 314, 423
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	6 cut(s)	79, 114, 156, 255, 390, 397
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	36, 361
MalI	GATC	6 cut(s)	59, 104, 162, 274, 307, 400
MboI	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
MboII	GAAGA	4 cut(s)	19, 67, 97, 167
MflI	RGATCY	2 cut(s)	272, 305
MmeI	TCCRAC	2 cut(s)	100, 300
MnlI	CCTC	3 cut(s)	3, 6, 339
MseI	TTAA	1 cut(s)	284
MspCI	CTTAAG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
NlaIII	CATG	3 cut(s)	294, 314, 423
NlaIV	GGNNCC	2 cut(s)	232, 274
NmuCI	GTSAC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	232, 274
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	272, 305
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	6 cut(s)	57, 102, 160, 272, 305, 398
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	5 cut(s)	38, 98, 143, 391, 413
SmlI	CTYRAG	2 cut(s)	191, 283
SmoI	CTYRAG	2 cut(s)	191, 283
SsiI	CCGC	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	80, 109
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	4 cut(s)	85, 114, 190, 357
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	84, 168
TspRI	CASTG	4 cut(s)	85, 114, 190, 357
Van91I	CCANNNNNTGG	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.