pycom09g17850

Uncharacterized protein At4g22758-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
18378794 .. 18379552
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17850.2

Sequence Viewer

Length: 411 bp
ATGCAGTACCAGACCTCTCCCTGGTGTCTGCCTCCGGTATTTGTGAAACACAAAATTTATGTAACCAAGGCCGAGGAACTAAAATTTATTATCGATTGCTATAACATCTTAAAATTGTTGTACTATCTGTCACAGAGACTTATGGGCATATGCCCTTTGCGCTGTCCTCCTCCTTTGGTTCTTGCAAACAAGCTTGGTACTACCGTTGCCTTGGCCTTCACCCCTGAACACCAAATCTCTTTCTTTCTCCCGAGATTCATTTTTCGTGTTTCGTTTTGTTATACTTACTTGGGTTTAATGCTGAAGATGAAGGTTTTGGAGAGAATTAATTTACAGAAGCATAAGAAGACCAGTACTGATGCTGCTCATACCTTGAAGACAAACAGGTTCATTTTTTTTATTCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.99

Weight (kDa)

9.74

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022415)

Species Orthologous Gene IDs
malus_domestica MD17G1260800.v1.1
prunus_persica Prupe.3G162600_v2.0.a1
pyrus_communis pycom09g17850 pycom17g26150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 54, 83
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 4 cut(s) 8, 122, 199, 355
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 2 cut(s) 69, 213
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 54, 83
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BbsI GAAGAC 2 cut(s) 353, 383
BbvI GCAGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 353, 383
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 20, 66, 72, 210
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 20, 66, 72, 210
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 2 cut(s) 71, 215
BshVI ATCGAT 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 71, 215
BsoBI CYCGRG 1 cut(s) 250
BspANI GGCC 2 cut(s) 71, 215
BspDI ATCGAT 1 cut(s) 93
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 4 cut(s) 20, 66, 72, 210
BssT1I CCWWGG 2 cut(s) 66, 210
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 205, 407
BstHHI GCGC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 353, 383
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 2 cut(s) 71, 215
BsuTUI ATCGAT 1 cut(s) 93
CfoI GCGC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 4 cut(s) 7, 121, 198, 354
CviJI RGCY 3 cut(s) 71, 193, 215
CviKI_1 RGCY 3 cut(s) 71, 193, 215
CviQI GTAC 4 cut(s) 7, 121, 198, 354
Eco130I CCWWGG 2 cut(s) 66, 210
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 66, 210
ErhI CCWWGG 2 cut(s) 66, 210
FaiI YATR 8 cut(s) 60, 102, 143, 149, 151, 282, 342, 369
FauNDI CATATG 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 363
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 71, 215
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 255
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 226, 304
HpyCH4III ACNGT 2 cut(s) 205, 407
HpyCH4V TGCA 2 cut(s) 4, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HspAI GCGC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 7, 23, 34, 48, 237, 364, 370
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 349
MaeIII GTNAC 2 cut(s) 61, 129
MboII GAAGA 3 cut(s) 316, 358, 388
MluCI AATT 5 cut(s) 54, 83, 113, 324, 328
MnlI CCTC 5 cut(s) 25, 42, 67, 177, 180
MseI TTAA 4 cut(s) 110, 296, 327, 409
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeI CATATG 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
RsaI GTAC 4 cut(s) 8, 122, 199, 355
RsaNI GTAC 4 cut(s) 7, 121, 198, 354
SaqAI TTAA 4 cut(s) 110, 296, 327, 409
SatI GCNGC 1 cut(s) 363
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 22
SetI ASST 5 cut(s) 17, 195, 315, 374, 389
SfaNI GCATC 1 cut(s) 349
Sse9I AATT 5 cut(s) 54, 83, 113, 324, 328
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 2 cut(s) 66, 210
TaaI ACNGT 2 cut(s) 205, 407
TaqI TCGA 1 cut(s) 93
TasI AATT 5 cut(s) 54, 83, 113, 324, 328
TatI WGTACW 2 cut(s) 120, 353
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 4 cut(s) 110, 296, 327, 409
Tru9I TTAA 4 cut(s) 110, 296, 327, 409
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 247, 323, 379
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 2 cut(s) 54, 83
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.