Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013099

Physical Location & Seq

Genomic Coordinates Forward (+)

20796859 .. 20799659

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G198000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTAATATTAAGAAAAACCGTCTAAAAGATGAAGTGGCTTTTCGCCGTTTCTTGCCATTGGTTTCAATTACATTGTTAGGGGTTTTCCTGTTGATGTTCCTTCTGAGAATTAATTCAAATTTTGCCACACCATCTTCGGATGATTTTAGTCAGGTATTGACAAATCGTTCACATGCTAGACATATGCTTAGCCTCCCCAAGCAGACTGAATTCTCACTTCAGTTGGAAAAGAGAAATCAGATGCCTCCCAGGAACTTAGATCTATATCCAAGTCTAGACAAGGATCACATAACTATTGTTCTTTATGTACACAATCGGCCCCAATATCTCAAAGCAGCTGTTGATAGTCTGTCTCGGGTTGTAGGAATTAATGAAACTTTACTAATAGTGAGCCATGACGGATACTTTGAAGAAATGAACAAGATTGTGGAAGGCATCAGATTTTGCCAGGTGAAACAGATATTTGCTCCTTTCTCGCCCCACGTCTTTCCCAATAGCTTTCCAGGTGTTTCACCAACAGACTGTAAGGAGAAGGATGATGCAACAAAGAAACAATGCAAAGGGACTCCTGATCAGTATGGAAACCACCGGTCCCCGAAGATAGTGTCATTAAAACATCATTGGTGGTGGATGATGAACACGGTGTGGGACGGATTGAAGGAGACCAAGGATCACAGTGGTCATATTCTTTTCATAGAGGAGGACCACTATATTTATCCCAATGCATATCGTAACTTACAGATACTCACTGAATTGAAGCCTCAGAAATGCCCTCATTGCTATGCTGCAAATTTAGCACCTTGTGATGTGAATGCAAGAGGAGAAGGTTGGGATAGTTTGATTGCAGAGAGAATGGGGAATGTGGGTTATACATTTAACCGGACTGTGTGGAGGAAAATCCACAGAAAGACTACAGAGTTTTGTTTCTTTGACGATTACAATTGGGACATAACAATGTGGGCAACAGTCTATCCCTCATTTGGTAATCCTGTTTTCACGCTACGAGGTCCTCGAACAAGTGCAGTACACTTTGGAAAATGTGGTTTGCACCAGGGCCAGGGGGAGGCGAGAGCATGCATCGATAACGGTATGGTAAACTTTCAAGTGGAGGAGATAGATACGGTTGCAAACATCAACTCAGACTGGGAAGTGCGAGTCTTTGAGCATCAGCCAGGGTATAAGGCTGGGTTCAAGGGTTGGGGAGGTTGGGGGGACAAGAGAGACCACCAATTGTGCTTGACTTTTGCTCAGATGTATCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008455 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009312 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0030246 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

MGAT2

Protein Analysis

423

Amino Acids

48.77

Weight (kDa)

8.42

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05320
fragaria_vesca	FvH4_6g40640
malus_domestica	MD09G1126500.v1.1 MD17G1116800.v1.1
prunus_persica	Prupe.3G198000_v2.0.a1 Prupe.3G198000_v2.0.a1 Prupe.3G198000_v2.0.a1 Prupe.3G198000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0156011
rosa_laevigata	RLG00000020881
rosa_multiflora	Rmu_sc0000260.1_g000023
rosa_roxburghii	Rroxscaffold_2G00093290
rosa_rugosa	Rorug02G0451200
rosa_samantha	Rh2AG518000 Rh2BG529200 Rh2CG502700 Rh2DG538300
rosa_wichuraiana	Rw2G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	294, 681
AcsI	RAATTY	3 cut(s)	121, 212, 793
AcuI	CTGAAG	1 cut(s)	206
AdeI	CACNNNGTG	2 cut(s)	648, 806
AfaI	GTAC	2 cut(s)	312, 1029
AfiI	CCNNNNNNNGG	3 cut(s)	983, 1060, 1066
AgeI	ACCGGT	1 cut(s)	591
AgsI	TTSAA	7 cut(s)	69, 120, 413, 661, 760, 1106, 1195
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
AluBI	AGCT	2 cut(s)	341, 501
AluI	AGCT	2 cut(s)	341, 501
Alw26I	GTCTC	3 cut(s)	360, 659, 1218
AlwI	GGATC	2 cut(s)	294, 681
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	2 cut(s)	320, 1057
ApeKI	GCWGC	2 cut(s)	338, 788
ApoI	RAATTY	3 cut(s)	121, 212, 793
ArsI	GACNNNNNNTTYG	4 cut(s)	392, 424, 593, 625
AseI	ATTAAT	2 cut(s)	114, 372
AsiGI	ACCGGT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	115
AspS9I	GGNCC	5 cut(s)	321, 594, 706, 1010, 1057
AsuHPI	GGTGA	2 cut(s)	466, 507
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	3 cut(s)	594, 706, 1010
BbvI	GCAGC	2 cut(s)	350, 775
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
BciVI	GTATCC	1 cut(s)	398
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	3 cut(s)	360, 659, 1218
BfaI	CTAG	2 cut(s)	180, 278
BfmI	CTRYAG	1 cut(s)	915
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	2 cut(s)	339, 789
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	2 cut(s)	340, 790
Bme1390I	CCNGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
Bme18I	GGWCC	3 cut(s)	594, 706, 1010
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	5 cut(s)	321, 594, 706, 1010, 1057
BmiI	GGNNCC	2 cut(s)	323, 596
BmrFI	CCNGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
BmrI	ACTGGG	1 cut(s)	1156
BmsI	GCATC	5 cut(s)	234, 447, 532, 1089, 1177
BmuI	ACTGGG	1 cut(s)	1156
Bpu1102I	GCTNAGC	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	1083
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	2 cut(s)	659, 1218
BsaJI	CCNNGG	5 cut(s)	251, 669, 1054, 1060, 1175
BsaWI	WCCGGW	2 cut(s)	591, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	983, 1060, 1066
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	1151
Bse3DI	GCAATG	1 cut(s)	778
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
BseCI	ATCGAT	1 cut(s)	1083
BseDI	CCNNGG	5 cut(s)	251, 669, 1054, 1060, 1175
BseGI	GGATG	3 cut(s)	148, 544, 639
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	983, 1060, 1066
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	4 cut(s)	98, 779, 1155, 1265
BseNI	ACTGG	1 cut(s)	1151
BseRI	GAGGAG	3 cut(s)	716, 837, 1127
BseXI	GCAGC	2 cut(s)	350, 775
BseYI	CCCAGC	1 cut(s)	1187
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	2 cut(s)	322, 1059
BshTI	ACCGGT	1 cut(s)	591
BshVI	ATCGAT	1 cut(s)	1083
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	592, 883
BslFI	GGGAC	5 cut(s)	580, 580, 665, 962, 1229
BslI	CCNNNNNNNGG	3 cut(s)	983, 1060, 1066
BsmAI	GTCTC	3 cut(s)	360, 659, 1218
BsmFI	GGGAC	5 cut(s)	580, 580, 665, 962, 1229
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	322, 1059
Bso31I	GGTCTC	2 cut(s)	659, 1218
BsoBI	CYCGRG	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	262, 286, 574, 673
Bsp1720I	GCTNAGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	322, 1059
BspCNI	CTCAG	4 cut(s)	99, 778, 1154, 1264
BspDI	ATCGAT	1 cut(s)	1083
BspLI	GGNNCC	2 cut(s)	323, 596
BspPI	GGATC	2 cut(s)	294, 681
BspTNI	GGTCTC	2 cut(s)	659, 1218
BsrDI	GCAATG	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	1151
BssAI	RCCGGY	1 cut(s)	591
BssECI	CCNNGG	5 cut(s)	251, 669, 1054, 1060, 1175
BssMI	GATC	4 cut(s)	262, 286, 574, 673
BssT1I	CCWWGG	1 cut(s)	669
Bst2UI	CCWGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
Bst4CI	ACNGT	8 cut(s)	23, 527, 646, 680, 889, 970, 1091, 1126
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	1078
BstDEI	CTNAG	6 cut(s)	107, 191, 259, 765, 1141, 1251
BstF5I	GGATG	3 cut(s)	148, 544, 639
BstKTI	GATC	4 cut(s)	265, 289, 577, 676
BstMAI	GTCTC	3 cut(s)	360, 659, 1218
BstMBI	GATC	4 cut(s)	262, 286, 574, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	780, 797
BstNI	CCWGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
BstNSI	RCATGY	2 cut(s)	179, 1080
BstSCI	CCNGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	350, 775
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	1083
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	322, 1059
BsuTUI	ATCGAT	1 cut(s)	1083
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	148, 544, 639
BtsIMutI	CAGTG	2 cut(s)	685, 750
Cac8I	GCNNGC	1 cut(s)	1078
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	5 cut(s)	321, 594, 706, 1010, 1057
ClaI	ATCGAT	1 cut(s)	1083
Csp6I	GTAC	2 cut(s)	311, 1028
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	3 cut(s)	176, 398, 1077
CviQI	GTAC	2 cut(s)	311, 1028
DdeI	CTNAG	6 cut(s)	107, 191, 259, 765, 1141, 1251
DpnI	GATC	4 cut(s)	264, 288, 576, 675
DpnII	GATC	4 cut(s)	262, 286, 574, 673
DraIII	CACNNNGTG	2 cut(s)	648, 806
Eco130I	CCWWGG	1 cut(s)	669
Eco31I	GGTCTC	2 cut(s)	659, 1218
Eco47I	GGWCC	3 cut(s)	594, 706, 1010
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
EcoT14I	CCWWGG	1 cut(s)	669
EcoT22I	ATGCAT	2 cut(s)	730, 1082
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	3 cut(s)	179, 401, 1080
FaqI	GGGAC	5 cut(s)	580, 580, 665, 962, 1229
FatI	CATG	3 cut(s)	175, 397, 1076
FauNDI	CATATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	339, 789
FokI	GGATG	3 cut(s)	155, 551, 646
Fsp4HI	GCNGC	2 cut(s)	339, 789
FspBI	CTAG	2 cut(s)	180, 278
GluI	GCNGC	2 cut(s)	339, 789
GsaI	CCCAGC	1 cut(s)	1191
HaeIII	GGCC	2 cut(s)	322, 1059
HapII	CCGG	2 cut(s)	592, 883
Hin1II	CATG	3 cut(s)	179, 401, 1080
HinfI	GANTC	2 cut(s)	568, 1158
HpaII	CCGG	2 cut(s)	592, 883
HphI	GGTGA	2 cut(s)	466, 507
Hpy166II	GTNNAC	4 cut(s)	173, 313, 1030, 1099
Hpy188I	TCNGA	7 cut(s)	108, 142, 243, 443, 768, 1144, 1254
Hpy188III	TCNNGA	2 cut(s)	278, 572
Hpy8I	GTNNAC	4 cut(s)	173, 313, 1030, 1099
HpyAV	CCTTC	5 cut(s)	113, 428, 529, 655, 821
HpyCH4III	ACNGT	8 cut(s)	23, 527, 646, 680, 889, 970, 1091, 1126
HpyCH4IV	ACGT	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	780, 797
HpyF3I	CTNAG	6 cut(s)	107, 191, 259, 765, 1141, 1251
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	179, 401, 1080
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	262, 286, 574, 673
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	2 cut(s)	350, 775
LweI	GCATC	5 cut(s)	234, 447, 532, 1089, 1177
MaeI	CTAG	2 cut(s)	180, 278
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	4 cut(s)	264, 288, 576, 675
MboI	GATC	4 cut(s)	262, 286, 574, 673
MboII	GAAGA	3 cut(s)	129, 425, 613
MfeI	CAATTG	2 cut(s)	943, 1232
MflI	RGATCY	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	562, 1167
MmeI	TCCRAC	1 cut(s)	207
Mph1103I	ATGCAT	2 cut(s)	730, 1082
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	5 cut(s)	12, 114, 372, 614, 879
MslI	CAYNNNNRTG	2 cut(s)	783, 956
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	592, 883
MspR9I	CCNGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
MunI	CAATTG	2 cut(s)	943, 1232
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	780, 797
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	4 cut(s)	262, 286, 574, 673
NlaIII	CATG	3 cut(s)	179, 401, 1080
NlaIV	GGNNCC	2 cut(s)	323, 596
NsiI	ATGCAT	2 cut(s)	730, 1082
NspI	RCATGY	2 cut(s)	179, 1080
PaeI	GCATGC	1 cut(s)	1080
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	115
PinAI	ACCGGT	1 cut(s)	591
PkrI	GCNGC	2 cut(s)	340, 790
PleI	GAGTC	2 cut(s)	562, 1166
PpsI	GAGTC	2 cut(s)	562, 1166
PpuMI	RGGWCCY	1 cut(s)	1010
PshBI	ATTAAT	2 cut(s)	114, 372
Psp5II	RGGWCCY	1 cut(s)	1010
Psp6I	CCWGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
PspFI	CCCAGC	1 cut(s)	1187
PspGI	CCWGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
PspN4I	GGNNCC	2 cut(s)	323, 596
PspPI	GGNCC	5 cut(s)	321, 594, 706, 1010, 1057
PspPPI	RGGWCCY	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	312, 1029
RsaNI	GTAC	2 cut(s)	311, 1028
RseI	CAYNNNNRTG	2 cut(s)	783, 956
SaqAI	TTAA	5 cut(s)	12, 114, 372, 614, 879
SatI	GCNGC	2 cut(s)	339, 789
Sau3AI	GATC	4 cut(s)	262, 286, 574, 673
Sau96I	GGNCC	5 cut(s)	321, 594, 706, 1010, 1057
SchI	GAGTC	2 cut(s)	562, 1167
ScrFI	CCNGG	6 cut(s)	253, 452, 507, 1055, 1061, 1176
SfaNI	GCATC	5 cut(s)	234, 447, 532, 1089, 1177
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	3 cut(s)	594, 706, 1010
SmiMI	CAYNNNNRTG	2 cut(s)	783, 956
SphI	GCATGC	1 cut(s)	1080
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	2 cut(s)	180, 278
StyD4I	CCNGG	6 cut(s)	251, 450, 505, 1053, 1059, 1174
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	8 cut(s)	23, 527, 646, 680, 889, 970, 1091, 1126
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	2 cut(s)	1015, 1083
TatI	WGTACW	2 cut(s)	310, 1027
Tru1I	TTAA	5 cut(s)	12, 114, 372, 614, 879
Tru9I	TTAA	5 cut(s)	12, 114, 372, 614, 879
TscAI	CASTG	2 cut(s)	685, 757
TseI	GCWGC	2 cut(s)	338, 788
TspDTI	ATGAA	6 cut(s)	48, 390, 434, 653, 685, 1254
TspGWI	ACGGA	2 cut(s)	417, 669
TspRI	CASTG	2 cut(s)	685, 757
VpaK11BI	GGWCC	3 cut(s)	594, 706, 1010
VspI	ATTAAT	2 cut(s)	114, 372
XapI	RAATTY	3 cut(s)	121, 212, 793
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	2 cut(s)	179, 1080
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	2 cut(s)	180, 278
Zsp2I	ATGCAT	2 cut(s)	730, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.