Prupe.3G212800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
21689549 .. 21689770
222 bp
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UTR
Exon/CDS
Intron
Prupe.3G212800.1

Sequence Viewer

Length: 222 bp
ATGAATCGCTTTCAACTTTGCCTCCTTTTCACTCTGCTCCTCTTCTTTGCTCCGACGAACAATCGTGCCATTCGAACAAGCTTCCCGAGCCCTGCATCTGCAAGAAGCCAGCAAGTTTTCAGGCCATCTGTTAGTGCCCCTTCTACCCGCCAGGCCAGAGTCTTTAACTCTGAGAAGCGAAGGGTGCCCACAGGATCAAACCCTTTGCACAACAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.32

Weight (kDa)

12.0

Isoelectric Point (pI)

77.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05065
prunus_persica Prupe.3G212800_v2.0.a1
pyrus_communis pycom09g03650
rosa_chinensis RchiOBHm_Chr2g0158481

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 202
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 122, 153
AsuII TTCGAA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 85
BaeGI GKGCMC 2 cut(s) 139, 189
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 92
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
BseBI CCWGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 2 cut(s) 139, 189
BshFI GGCC 2 cut(s) 124, 155
BshNI GGYRCC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 85
BsnI GGCC 2 cut(s) 124, 155
BsoBI CYCGRG 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 92, 139, 189
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 124, 155
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 202
BspT104I TTCGAA 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 184
BssMI GATC 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 3 cut(s) 87, 184, 214
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 2 cut(s) 139, 189
BsuRI GGCC 2 cut(s) 124, 155
Cac8I GCNNGC 1 cut(s) 110
CviJI RGCY 5 cut(s) 81, 90, 108, 124, 155
CviKI_1 RGCY 5 cut(s) 81, 90, 108, 124, 155
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 92
FauI CCCGC 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 124, 155
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 2 cut(s) 4, 159
Hpy188I TCNGA 2 cut(s) 54, 172
Hpy188III TCNNGA 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 150, 174
HpyCH4V TGCA 3 cut(s) 95, 101, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 184, 214
HpyF3I CTNAG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 42, 55
LpnPI CCDG 7 cut(s) 105, 106, 122, 137, 164, 169, 177
LweI GCATC 1 cut(s) 104
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 3 cut(s) 92, 139, 189
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 32, 50
MseI TTAA 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 87, 184, 214
NdeII GATC 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 186
NspV TTCGAA 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 1 cut(s) 194
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 3 cut(s) 92, 139, 189
SetI ASST 1 cut(s) 83
SfaNI GCATC 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 73
SsiI CCGC 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 73
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.