Prupe.3G234600_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0021208
Physical Location & Seq
Forward (+)
23025240 .. 23026534
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G234600.1

Sequence Viewer

Length: 1062 bp
ATGGCAAACCCTGGATTGAGCATTAAGCTCATCCACCGCGATTCCCAACCCAACCTCACACAGTCACACAGAACTCAAAAACTCATTCTCCTATCCAAAGCTCGAGCCATGCGCCTAACGAAAGACTTGCATTCCAAGTACATCAATAATTCCAATGCTAATGTTGTGCCTGCAAAAATTTATTATCAGAAAGACTCTACCTACATGGCACAAGTGAGCATAGGCACATTCAGGAGGACACCCCCGATTTCTTACTTCCTTGACGTGGACACGGGGAGTGGCATTATATGGATCCAATGCCAAGAGTGTAGAAATCCAGGACACCACTGCTTTTACCAGAGACAACCCCTTTCCCCTCTTTGGAATCCCTTTCTTATCAAAAACTTATGCATTGGGAACTTTTGCTCCTACCTTGTGCAGTACGACGATGGTGCTACATCCGAAGGCTACCTTGCATCAGAAACCTTTAATTTCGATTCAAATTCAACTTCTCGAAACGTAGTTTTTGGGTATGGTATTAATCAGATCAAAATGGATAGGTATGGTACTGGGGGTGGTAATGTTGCTGGCATATTAGGCTTGGGATGGTCATCTCATTCCCTTGTCAACCAATTAGGCCCTATAGCACAAGCCAATATTGCTGGTTCGCGTCTAACAATCCCAGCCAACTACTTCCAAAGGAGATCTGGTCGCGGTGGGACTATAATAGACACAGGAACTGCTCATACATTTCTTGTTAGACCAGCCTACGAAATGTTGGAACGAGCACTTGTGAACTACTTCTCCAGGATGCCTAGCGTGTTTCGGATTCATAGACAAAGATTTTTCAATTTGTGCTACCAAAGAACAACAACAAGAGGAGGGTTTAACAATCTTCCAACAATCGCATTCCATTTGAGCAACGCGGATCTTGTAGTGCAGCCTCAGGGTGCGTTTTACTTGGGTGATATATTCGGGCGATACATGATAGGTGCATATCAGCAAACAAATCAGCGTTTCATATATGATGTTAGCCGAAAGACATTGAATTTTGGCCCTGCAGATTGTGCCCGAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

354

Amino Acids

39.76

Weight (kDa)

9.72

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021208)

Species Orthologous Gene IDs
malus_domestica MD11G1298600.v1.1
prunus_persica Prupe.3G234600_v2.0.a1 Prupe.8G253600_v2.0.a1 Prupe.8G253700_v2.0.a1 Prupe.8G253800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 39, 649, 693, 905
AciI CCGC 3 cut(s) 37, 693, 905
AclWI GGATC 3 cut(s) 286, 299, 915
AcsI RAATTY 3 cut(s) 177, 481, 1027
AfaI GTAC 3 cut(s) 140, 422, 547
AfiI CCNNNNNNNGG 2 cut(s) 265, 360
AgsI TTSAA 4 cut(s) 480, 486, 829, 1027
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 3 cut(s) 10, 316, 785
AloI GAACNNNNNNTCC 4 cut(s) 389, 421, 767, 799
AluBI AGCT 2 cut(s) 28, 101
AluI AGCT 2 cut(s) 28, 101
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 3 cut(s) 286, 299, 915
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 616, 1033
ApeKI GCWGC 1 cut(s) 919
ApoI RAATTY 3 cut(s) 177, 481, 1027
AseI ATTAAT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 617, 1034
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 924
BaeGI GKGCMC 1 cut(s) 1051
BamHI GGATCC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 931
BccI CCATC 2 cut(s) 422, 579
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 413, 447
BciT130I CCWGG 3 cut(s) 12, 318, 787
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 2 cut(s) 621, 1038
BglII AGATCT 1 cut(s) 683
BisI GCNGC 1 cut(s) 920
BlsI GCNGC 1 cut(s) 921
Bme1390I CCNGG 3 cut(s) 12, 318, 787
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 617, 1034
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 3 cut(s) 12, 318, 787
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 464, 780
BmuI ACTGGG 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 769
BsaBI GATNNNNATC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 8 cut(s) 72, 102, 389, 419, 673, 703, 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 360
Bse1I ACTGG 1 cut(s) 553
Bse21I CCTNAGG 1 cut(s) 924
Bse8I GATNNNNATC 1 cut(s) 589
BseBI CCWGG 3 cut(s) 12, 318, 787
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 4 cut(s) 30, 437, 590, 795
BseJI GATNNNNATC 1 cut(s) 589
BseLI CCNNNNNNNGG 2 cut(s) 265, 360
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 873
BseSI GKGCMC 1 cut(s) 1051
BseXI GCAGC 1 cut(s) 931
BseYI CCCAGC 1 cut(s) 661
BsgI GTGCAG 2 cut(s) 437, 938
Bsh1236I CGCG 4 cut(s) 39, 649, 693, 905
BshFI GGCC 2 cut(s) 618, 1035
BsiHKAI GWGCWC 1 cut(s) 769
BsiHKCI CYCGRG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 2 cut(s) 265, 360
BsmAI GTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 712
BsmI GAATGC 2 cut(s) 130, 887
BsnI GGCC 2 cut(s) 618, 1035
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 769, 1051
Bsp143I GATC 4 cut(s) 291, 525, 683, 907
BspACI CCGC 3 cut(s) 37, 693, 905
BspANI GGCC 2 cut(s) 618, 1035
BspCNI CTCAG 1 cut(s) 937
BspFNI CGCG 4 cut(s) 39, 649, 693, 905
BspLI GGNNCC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 3 cut(s) 286, 299, 915
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 291, 525, 683, 907
Bst2UI CCWGG 3 cut(s) 12, 318, 787
Bst4CI ACNGT 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstC8I GCNNGC 2 cut(s) 171, 568
BstDEI CTNAG 1 cut(s) 924
BstF5I GGATG 4 cut(s) 30, 437, 590, 795
BstFNI CGCG 4 cut(s) 39, 649, 693, 905
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 4 cut(s) 294, 528, 686, 910
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 4 cut(s) 291, 525, 683, 907
BstMWI GCNNNNNNNGC 3 cut(s) 576, 638, 1046
BstNI CCWGG 3 cut(s) 12, 318, 787
BstSCI CCNGG 3 cut(s) 10, 316, 785
BstSFI CTRYAG 2 cut(s) 621, 1038
BstSLI GKGCMC 1 cut(s) 1051
BstUI CGCG 4 cut(s) 39, 649, 693, 905
BstV1I GCAGC 1 cut(s) 931
BstX2I RGATCY 3 cut(s) 291, 683, 907
BstYI RGATCY 3 cut(s) 291, 683, 907
Bsu36I CCTNAGG 1 cut(s) 924
BsuRI GGCC 2 cut(s) 618, 1035
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 4 cut(s) 30, 437, 590, 795
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 171, 568
CaiI CAGNNNCTG 1 cut(s) 719
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 617, 1034
CseI GACGC 1 cut(s) 638
Csp6I GTAC 3 cut(s) 139, 421, 546
CviAII CATG 4 cut(s) 109, 205, 964, 1059
CviQI GTAC 3 cut(s) 139, 421, 546
DdeI CTNAG 1 cut(s) 924
DpnI GATC 4 cut(s) 293, 527, 685, 909
DpnII GATC 4 cut(s) 291, 525, 683, 907
Eco81I CCTNAGG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 10, 316, 785
EcoT22I ATGCAT 1 cut(s) 392
FaeI CATG 4 cut(s) 112, 208, 967, 1062
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 712
FatI CATG 4 cut(s) 108, 204, 963, 1058
Fnu4HI GCNGC 1 cut(s) 920
FokI GGATG 4 cut(s) 17, 424, 597, 802
Fsp4HI GCNGC 1 cut(s) 920
FspBI CTAG 1 cut(s) 795
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 920
GsaI CCCAGC 1 cut(s) 665
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 2 cut(s) 618, 1035
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 114
Hin1II CATG 4 cut(s) 112, 208, 967, 1062
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 5 cut(s) 41, 194, 364, 476, 808
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 3 cut(s) 268, 607, 775
Hpy188I TCNGA 5 cut(s) 189, 442, 460, 525, 807
Hpy188III TCNNGA 2 cut(s) 232, 492
Hpy8I GTNNAC 3 cut(s) 268, 607, 775
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 2 cut(s) 264, 498
HpyCH4V TGCA 8 cut(s) 130, 173, 390, 418, 455, 919, 974, 1040
HpyF10VI GCNNNNNNNGC 3 cut(s) 576, 638, 1046
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 2 cut(s) 264, 498
Hsp92II CATG 4 cut(s) 112, 208, 967, 1062
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 4 cut(s) 291, 525, 683, 907
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 2 cut(s) 464, 780
MaeI CTAG 1 cut(s) 795
MaeII ACGT 2 cut(s) 264, 498
MaeIII GTNAC 1 cut(s) 63
MalI GATC 4 cut(s) 293, 527, 685, 909
MboI GATC 4 cut(s) 291, 525, 683, 907
MboII GAAGA 1 cut(s) 866
MflI RGATCY 3 cut(s) 291, 683, 907
MhlI GDGCHC 2 cut(s) 769, 1051
MluCI AATT 7 cut(s) 148, 177, 469, 481, 611, 829, 1027
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 738, 902
MnlI CCTC 6 cut(s) 65, 228, 366, 851, 854, 933
Mph1103I ATGCAT 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 4 cut(s) 24, 468, 519, 867
MspR9I CCNGG 3 cut(s) 12, 318, 787
Mva1269I GAATGC 2 cut(s) 130, 887
MvaI CCWGG 3 cut(s) 12, 318, 787
MvnI CGCG 4 cut(s) 39, 649, 693, 905
MwoI GCNNNNNNNGC 3 cut(s) 576, 638, 1046
NdeII GATC 4 cut(s) 291, 525, 683, 907
NlaIII CATG 4 cut(s) 112, 208, 967, 1062
NlaIV GGNNCC 1 cut(s) 293
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 102
PctI GAATGC 2 cut(s) 130, 887
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 41, 364, 476, 808
PfoI TCCNGGA 2 cut(s) 316, 785
PkrI GCNGC 1 cut(s) 921
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 10, 316, 785
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 3 cut(s) 10, 316, 785
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 2 cut(s) 617, 1034
PspXI VCTCGAGB 1 cut(s) 102
PsrI GAACNNNNNNTAC 2 cut(s) 709, 741
PstI CTGCAG 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 3 cut(s) 291, 683, 907
RsaI GTAC 3 cut(s) 140, 422, 547
RsaNI GTAC 3 cut(s) 139, 421, 546
SaqAI TTAA 4 cut(s) 24, 468, 519, 867
SatI GCNGC 1 cut(s) 920
Sau3AI GATC 4 cut(s) 291, 525, 683, 907
Sau96I GGNCC 2 cut(s) 617, 1034
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 12, 318, 787
SduI GDGCHC 2 cut(s) 769, 1051
SfaNI GCATC 2 cut(s) 464, 780
SfcI CTRYAG 2 cut(s) 621, 1038
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 7 cut(s) 148, 177, 469, 481, 611, 829, 1027
SsiI CCGC 3 cut(s) 37, 693, 905
SspI AATATT 1 cut(s) 637
SspMI CTAG 1 cut(s) 795
StyD4I CCNGG 3 cut(s) 10, 316, 785
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 2 cut(s) 267, 501
TaqI TCGA 3 cut(s) 103, 474, 493
TasI AATT 7 cut(s) 148, 177, 469, 481, 611, 829, 1027
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 4 cut(s) 41, 364, 476, 808
Tru1I TTAA 4 cut(s) 24, 468, 519, 867
Tru9I TTAA 4 cut(s) 24, 468, 519, 867
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 919
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 800, 988
TspRI CASTG 1 cut(s) 332
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 3 cut(s) 177, 481, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 1 cut(s) 795
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.