Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0018918

Physical Location & Seq

Genomic Coordinates Forward (+)

25369932 .. 25370234

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G274900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAATGCATTGCCGAGATCATCGATTTCATTTAGGAGGCAAGGCTCTTCCGGCCTCATTTGGGAGGATAGGATTCAAGTACTTGAACAGAAGCCCGCTCTGCAGGTCACAATTTCCATTAAGAAAAGTGACTGTCAAGAGCATGCTTCGAATCTCGACGAAAGATTTCAAGACAGAAAGGATGTTGATTCACCTTCCCCACCATTACCAGAGACATCTGTACCTTCTAAACCAGAAAAAAAAGATCGAGGATGTTCCTTTTCTATCCTGTTTGGCCGATGTATGCGGTCTCCTGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.22

Weight (kDa)

8.96

Isoelectric Point (pI)

67.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018918)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G274900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349451
rosa_roxburghii	Rroxscaffold_4G00305540
rosa_rugosa	Rorug01G0203900
rosa_samantha	Rh1AG221200 Rh1BG187300 Rh1CG206100 Rh1DG216600
rosa_wichuraiana	Rw1G018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	2 cut(s)	96, 286
AcoI	YGGCCR	1 cut(s)	274
AfaI	GTAC	2 cut(s)	81, 222
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	77, 86, 170
Alw26I	GTCTC	2 cut(s)	206, 294
AoxI	GGCC	2 cut(s)	52, 274
ApeKI	GCWGC	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BcoDI	GTCTC	2 cut(s)	206, 294
BfaI	CTAG	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	101, 294
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	23
BseGI	GGATG	2 cut(s)	187, 257
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	54, 276
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	206, 294
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	54, 276
Bso31I	GGTCTC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	17, 244
BspACI	CCGC	2 cut(s)	96, 286
BspANI	GGCC	2 cut(s)	54, 276
BspDI	ATCGAT	1 cut(s)	23
BspMAI	CTGCAG	2 cut(s)	105, 298
BspMI	ACCTGC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	8
BssMI	GATC	2 cut(s)	17, 244
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	96, 144
BstF5I	GGATG	2 cut(s)	187, 257
BstKTI	GATC	2 cut(s)	20, 247
BstMAI	GTCTC	2 cut(s)	206, 294
BstMBI	GATC	2 cut(s)	17, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 100
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	101, 294
Bsu15I	ATCGAT	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	54, 276
BsuTUI	ATCGAT	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	187, 257
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	96, 144
ClaI	ATCGAT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	80, 221
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	5 cut(s)	45, 54, 94, 276, 299
CviKI_1	RGCY	5 cut(s)	45, 54, 94, 276, 299
CviQI	GTAC	2 cut(s)	80, 221
DpnI	GATC	2 cut(s)	19, 246
DpnII	GATC	2 cut(s)	17, 244
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	144, 284
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	2 cut(s)	194, 264
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	301
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	54, 276
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	3 cut(s)	73, 151, 188
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	183
Hpy188III	TCNNGA	3 cut(s)	137, 155, 170
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	204, 234
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	8, 103, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 100
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	17, 244
LguI	GCTCTTC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	64, 89, 222, 246, 281
MaeI	CTAG	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	106, 128
MalI	GATC	2 cut(s)	19, 246
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	2 cut(s)	17, 244
MboII	GAAGA	1 cut(s)	39
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	4 cut(s)	30, 58, 65, 242
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	120
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	51, 100
NdeII	GATC	2 cut(s)	17, 244
NlaIII	CATG	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	106, 128
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	73, 151, 188
PkrI	GCNGC	1 cut(s)	298
PstI	CTGCAG	2 cut(s)	105, 298
RsaI	GTAC	2 cut(s)	81, 222
RsaNI	GTAC	2 cut(s)	80, 221
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	17, 244
ScaI	AGTACT	1 cut(s)	81
SetI	ASST	3 cut(s)	108, 196, 226
SfcI	CTRYAG	2 cut(s)	101, 294
SfuI	TTCGAA	1 cut(s)	149
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	96, 286
SspMI	CTAG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	23, 149, 156, 247
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	73, 151, 188
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	106, 128
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	2 cut(s)	106, 128
TspDTI	ATGAA	2 cut(s)	17, 18
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.