Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

28429831 .. 28435333

Gene Structure 5503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0203900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCAGGTTTGCTTTGGGAGTATTTCTTTTCTGGATCTTTTGTACATACTGACCTTGGAGGGAAGTCTGGTCGGCTCAGTGTTTGGCTATCTACTACAAATAGGCAAGTCATTGCGGGTGGAGTTGGTGGACCACTAAACTCTGCAGGACCTGTTCAGCTTGGCTCACAGCTTGACCCATACAGTGAGATGACATTCTCCACAAGCAACACAAACAGCGAAGCTAATGTTGCCAGGGGTAGGAAAGCTCTTGAATATTTGCAATTGATGCCATTTCGCCTTGCTCCTATGGTGATAAAGTACATCAATGGAAGTTTTACTGATGAAATCCTAACTGGGAATCAGGAAGGTGGGCTTCGCTCAACATATAGAATCGAATCAGAGCAATTGCTTAAGTGCAAGAGACTCCTCTCTGGTTCTTTACAGGACCTTGAACGACTGACGGGATGTGATATTTGGCTTGGTGCGGACCGCGTTATTATTGTCGGTACACTTGAAGGATCAAGGCTAGCAAGGGAGGTTGTGGAAGACTGCATCGTTCGTAATGTGCCTCCTGCGCCCAAAATCAGAAACCTCATGACGAGTCTAGCATCGCAGGAATTCGAGACTCTGGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

206

Amino Acids

22.53

Weight (kDa)

5.93

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_2nd	PF21800	140 - 194	1.1e-07	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	474
AciI	CCGC	3 cut(s)	116, 467, 472
AclWI	GGATC	2 cut(s)	43, 508
AcsI	RAATTY	1 cut(s)	599
AfaI	GTAC	3 cut(s)	45, 302, 490
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	3 cut(s)	254, 434, 497
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	160, 172, 224, 248
AluI	AGCT	4 cut(s)	160, 172, 224, 248
Alw26I	GTCTC	2 cut(s)	397, 599
AlwI	GGATC	2 cut(s)	43, 508
AlwNI	CAGNNNCTG	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	4 cut(s)	131, 149, 427, 469
AsuHPI	GGTGA	1 cut(s)	304
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	4 cut(s)	131, 149, 427, 469
BbsI	GAAGAC	1 cut(s)	534
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	397, 599
BfaI	CTAG	2 cut(s)	509, 587
BfmI	CTRYAG	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	4 cut(s)	131, 149, 427, 469
BmgT120I	GGNCC	4 cut(s)	131, 149, 427, 469
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	258, 543, 599
BmtI	GCTAGC	1 cut(s)	512
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	55, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	55, 234
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	397, 599
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	35, 500
BspACI	CCGC	3 cut(s)	116, 467, 472
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	474
BspHI	TCATGA	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	43, 508
BspTI	CTTAAG	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	55, 234
BssMI	GATC	2 cut(s)	35, 500
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	2 cut(s)	38, 503
BstMAI	GTCTC	2 cut(s)	397, 599
BstMBI	GATC	2 cut(s)	35, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 268, 556
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	85, 190
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	131, 149, 427, 469
CpoI	CGGWCCG	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	44, 301, 489
CspI	CGGWCCG	1 cut(s)	469
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	3 cut(s)	44, 301, 489
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	37, 502
DpnII	GATC	2 cut(s)	35, 500
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	4 cut(s)	131, 149, 427, 469
EcoO109I	RGGNCCY	2 cut(s)	149, 427
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	580
FaiI	YATR	7 cut(s)	48, 181, 290, 367, 369, 578, 619
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	459
FspBI	CTAG	2 cut(s)	509, 587
GlaI	GCGC	1 cut(s)	558
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HinfI	GANTC	6 cut(s)	340, 372, 377, 405, 583, 607
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	131, 491
Hpy188I	TCNGA	2 cut(s)	382, 569
Hpy188III	TCNNGA	5 cut(s)	33, 251, 344, 577, 604
Hpy8I	GTNNAC	2 cut(s)	131, 491
HpyAV	CCTTC	2 cut(s)	341, 491
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	146, 262, 399, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 268, 556
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	2 cut(s)	35, 500
LmnI	GCTCC	1 cut(s)	289
LweI	GCATC	3 cut(s)	258, 543, 599
MaeI	CTAG	2 cut(s)	509, 587
MalI	GATC	2 cut(s)	37, 502
MboI	GATC	2 cut(s)	35, 500
MboII	GAAGA	1 cut(s)	539
MfeI	CAATTG	2 cut(s)	263, 386
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	3 cut(s)	263, 386, 599
MlyI	GAGTC	3 cut(s)	399, 592, 601
MnlI	CCTC	5 cut(s)	53, 419, 511, 561, 584
MseI	TTAA	1 cut(s)	393
MspCI	CTTAAG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	2 cut(s)	263, 386
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	230, 268, 556
NdeII	GATC	2 cut(s)	35, 500
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	580
PagI	TCATGA	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	340, 372, 377
PleI	GAGTC	3 cut(s)	399, 591, 601
PpsI	GAGTC	3 cut(s)	399, 591, 601
PpuMI	RGGWCCY	2 cut(s)	149, 427
Psp5II	RGGWCCY	2 cut(s)	149, 427
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspPI	GGNCC	4 cut(s)	131, 149, 427, 469
PspPPI	RGGWCCY	2 cut(s)	149, 427
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	3 cut(s)	45, 302, 490
RsaNI	GTAC	3 cut(s)	44, 301, 489
Rsr2I	CGGWCCG	1 cut(s)	469
RsrII	CGGWCCG	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	35, 500
Sau96I	GGNCC	4 cut(s)	131, 149, 427, 469
SchI	GAGTC	3 cut(s)	399, 592, 601
ScrFI	CCNGG	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	258, 543, 599
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	4 cut(s)	131, 149, 427, 469
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	263, 386, 599
SsiI	CCGC	3 cut(s)	116, 467, 472
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	2 cut(s)	509, 587
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	375, 603
TasI	AATT	3 cut(s)	263, 386, 599
TatI	WGTACW	2 cut(s)	43, 300
TfiI	GAWTC	3 cut(s)	340, 372, 377
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	85, 190
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	85, 190
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	4 cut(s)	131, 149, 427, 469
XapI	RAATTY	1 cut(s)	599
XspI	CTAG	2 cut(s)	509, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.