Rw4G015140

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000596
Physical Location & Seq
Forward (+)
34857389 .. 34859489
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015140.1

Sequence Viewer

Length: 726 bp
ATGAATCCACTAGTTGGCAACCCGGCCTTATTTTGTTGTAACGTTTTCTTCATTTTGTTCGTGGTTGGTGTGGTTGGAAATATCATCTCTGGCGGGCTTTTTCTCTCTCCAATACCTACGTTTATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCAACAGTGTTGAACTGTTTGTTATGGTGTTACTATGGATTGCCATTTATTAATCCAAACAGCATTTTAGTTGTCACCATTAATGGAATTGGGTTACTTATAGAGCTTATATATCTGGGCATATTCTTCTATTATACTTCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTGTATGTGAACTAGTTTTCTTTGGGGCTGTTATGAATCGACATTTGAGGGCTGTTGTAATTGGTATTATCTGTGACTTTTTCAATGTCCTCATGTATAGCTCTCCTCTATTCATCTTGAGAGATGTCTTTAAAACAAAGAGTGTGCAATACATGCCATTCTCACTCTCGGTTGCTAACTTTCTGAATGGTTGTTGCTGGACTTCCTATGCTCTTATTGGAAAAGTGGACTACTTTATTTTGGTTAGCAACGGTCTCGGTGCAATCGCTGGAGCAATTCAATTGATAGTTTATGCAATATACTACAAATCTACACCAAAAAATGAAGACCCCACTAACAAGGCTACTAATGAAGTGCAGCTCGCAACTATTGTCTAA

Protein Analysis

241

Amino Acids

26.92

Weight (kDa)

8.86

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 21 - 108 1.7e-21 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 136 - 220 6.9e-23 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 14
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 42
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 190, 433, 629
AhlI ACTAGT 2 cut(s) 10, 361
AluBI AGCT 4 cut(s) 155, 283, 450, 709
AluI AGCT 4 cut(s) 155, 283, 450, 709
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 706
AseI ATTAAT 2 cut(s) 228, 258
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 718
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 608
BcuI ACTAGT 2 cut(s) 10, 361
BfaI CTAG 2 cut(s) 11, 362
BisI GCNGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 708
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 487
BpuMI CCSGG 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 608
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 725
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 608
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 608
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 608
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 184, 194, 602
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 95, 711
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 681
BsuRI GGCC 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 95, 711
CviAII CATG 2 cut(s) 442, 502
CviJI RGCY 9 cut(s) 26, 97, 155, 283, 377, 401, 450, 692, 709
CviKI_1 RGCY 9 cut(s) 26, 97, 155, 283, 377, 401, 450, 692, 709
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraI TTTAAA 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 300
FaeI CATG 2 cut(s) 445, 505
FatI CATG 2 cut(s) 441, 501
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 707
Fsp4HI GCNGC 1 cut(s) 707
FspBI CTAG 2 cut(s) 11, 362
GluI GCNGC 1 cut(s) 707
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 445, 505
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 4, 385
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 359, 577
Hpy188I TCNGA 1 cut(s) 534
Hpy188III TCNNGA 1 cut(s) 466
Hpy8I GTNNAC 2 cut(s) 359, 577
HpyCH4III ACNGT 3 cut(s) 184, 194, 602
HpyCH4IV ACGT 2 cut(s) 42, 119
HpyCH4V TGCA 5 cut(s) 179, 496, 611, 644, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpySE526I ACGT 2 cut(s) 42, 119
Hsp92II CATG 2 cut(s) 445, 505
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 620
LpnPI CCDG 5 cut(s) 36, 75, 278, 532, 603
Lsp1109I GCAGC 1 cut(s) 718
MaeI CTAG 2 cut(s) 11, 362
MaeII ACGT 2 cut(s) 42, 119
MaeIII GTNAC 5 cut(s) 38, 206, 250, 270, 422
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 40, 295, 686
MfeI CAATTG 1 cut(s) 629
MluCI AATT 4 cut(s) 264, 408, 624, 629
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 4 cut(s) 327, 390, 449, 465
MseI TTAA 3 cut(s) 228, 258, 480
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 445, 505
NmuCI GTSAC 2 cut(s) 250, 422
NspI RCATGY 1 cut(s) 505
PfeI GAWTC 2 cut(s) 4, 385
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 1 cut(s) 708
PshBI ATTAAT 2 cut(s) 228, 258
Psp1406I AACGTT 1 cut(s) 42
SaqAI TTAA 3 cut(s) 228, 258, 480
SatI GCNGC 1 cut(s) 707
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 23
SetI ASST 9 cut(s) 45, 118, 122, 157, 172, 177, 285, 452, 711
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
SpeI ACTAGT 2 cut(s) 10, 361
Sse9I AATT 4 cut(s) 264, 408, 624, 629
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 11, 362
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 184, 194, 602
TaiI ACGT 2 cut(s) 45, 122
TaqI TCGA 2 cut(s) 159, 388
TasI AATT 4 cut(s) 264, 408, 624, 629
TfiI GAWTC 2 cut(s) 4, 385
Tru1I TTAA 3 cut(s) 228, 258, 480
Tru9I TTAA 3 cut(s) 228, 258, 480
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 2 cut(s) 250, 422
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 2 cut(s) 250, 422
TspDTI ATGAA 6 cut(s) 17, 40, 398, 451, 687, 714
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 14
VspI ATTAAT 2 cut(s) 228, 258
XceI RCATGY 1 cut(s) 505
XspI CTAG 2 cut(s) 11, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.