RLG00000022004

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
79890602 .. 79892313
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022004

Sequence Viewer

Length: 732 bp
ATGGGGCACACAGCTACTGCTAGGTTCATGGTCGGTGTGATTGGAAATGTCATCTCTGCCGGGCTTTTTCTTTCCCCAGTTCCTACGTTCTTACAAATATGGAGAAAGAAAGATGTGGAAGCTTTTGATCCAAAACCTTACCTTGCTACAGTGTTAAACTGTTTGTTTTGGTGTTATTACGGAATGCCATTCGTCAATCCAAACAGTATTTTAGTTGTCACAATTAATGGAGCTGGGCTAGTAATAGAGCTTATATATCTTGCTATATTCTTCCTTTATGCTCCAGCAAAAGGACGGAAAAAGGTTACCACATTCTTAGTAGGTGAATTTGTTTTCTTTGCGGCTATTGTGGTTGCAACTATGTTGACAATATCTGAGCATAAGATGATGATGAATCGACCTCTGCGGGCTGTCGTAGTTGGTATTATCTGTGATGTTTTCAATGTTATCATGTATAGCTCTCCTCTGTTCATTGTGAGAAAAGTCATCAAAACGAAGAGTGTGAAATACATGCCATTCCTTCTCTCATTGGCCAATTTTCTGAATGGTTGTTGCTGGACTGCATATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTGCTGGAGCAATTCAATTGATAGTGTATGCAATATTCTACAAAACTACACCAAAAGAAGACCCTTCTAGCAAGCCTACTAATGAAGTGCAACTTTCTACTAATGTCTAA

Protein Analysis

244

Amino Acids

26.94

Weight (kDa)

9.42

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 97 7.1e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 139 - 222 2.9e-23 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 341, 406
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 442, 638
AluBI AGCT 5 cut(s) 14, 122, 233, 250, 459
AluI AGCT 5 cut(s) 14, 122, 233, 250, 459
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 531
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 687
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 3 cut(s) 21, 239, 690
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 687
BpmI CTGGAG 2 cut(s) 267, 648
BpuMI CCSGG 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 617
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 341, 406
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 367
BspPI GGATC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 617
BsrI ACTGG 1 cut(s) 77
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 4 cut(s) 151, 161, 206, 611
Bst6I CTCTTC 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 408, 695
BstDEI CTNAG 2 cut(s) 316, 375
BstEII GGTNACC 1 cut(s) 304
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 514
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 408, 695
CaiI CAGNNNCTG 1 cut(s) 17
CviAII CATG 3 cut(s) 28, 451, 511
DdeI CTNAG 2 cut(s) 316, 375
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 617
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
FaeI CATG 3 cut(s) 31, 454, 514
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FatI CATG 3 cut(s) 27, 450, 510
FauI CCCGC 1 cut(s) 399
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 21, 239, 690
GluI GCNGC 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 267, 648
HaeIII GGCC 1 cut(s) 533
HapII CCGG 1 cut(s) 60
Hin1II CATG 3 cut(s) 31, 454, 514
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 394
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 366, 586
Hpy188I TCNGA 2 cut(s) 376, 543
Hpy8I GTNNAC 2 cut(s) 366, 586
HpyAV CCTTC 2 cut(s) 530, 696
HpyCH4III ACNGT 4 cut(s) 151, 161, 206, 611
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 5 cut(s) 356, 563, 620, 653, 712
HpyF3I CTNAG 2 cut(s) 316, 375
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 31, 454, 514
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 230, 286, 629
LpnPI CCDG 6 cut(s) 73, 90, 219, 297, 541, 612
MaeI CTAG 3 cut(s) 21, 239, 690
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 217, 304
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 262, 508, 692
MfeI CAATTG 2 cut(s) 621, 638
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 6 cut(s) 222, 326, 535, 621, 633, 638
MluNI TGGCCA 1 cut(s) 533
MnlI CCTC 2 cut(s) 411, 474
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 155, 225
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 2 cut(s) 621, 638
Mva1269I GAATGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 61
NdeI CATATG 1 cut(s) 565
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 31, 454, 514
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 514
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 155, 225
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 147
Sse9I AATT 6 cut(s) 222, 326, 535, 621, 633, 638
SsiI CCGC 2 cut(s) 341, 406
SspI AATATT 1 cut(s) 657
SspMI CTAG 3 cut(s) 21, 239, 690
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 4 cut(s) 151, 161, 206, 611
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 397
TasI AATT 6 cut(s) 222, 326, 535, 621, 633, 638
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 155, 225
Tru9I TTAA 2 cut(s) 155, 225
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 5 cut(s) 16, 407, 460, 583, 720
TspGWI ACGGA 2 cut(s) 195, 310
TspRI CASTG 1 cut(s) 156
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 514
XspI CTAG 3 cut(s) 21, 239, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.