Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

3740586 .. 3741390

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCATTCGTCAATCCAAACAGTATTTTAGTTGTCACCATTAATGGAGCTGGGCTATTAATAGAGCTTATATATCTTGCTATATTCTTCCTTTATGCTCCAGCAAAAGGACGGAAAAAGGTTACCACATACTTGGTATGTGAATTTGTTTTCTTTGCGGCTATTGTGGTTGCAACTATGTTGACAATAGCTGAGCATAAGATGGTGATGAATAGACCTCTACGGGCTGTCGTAGTTGGTATTATCTGTGATGTTTTCAATGTTATCATGTATAGCTCTCCTCTGTTCATTGTGAGAAAAGTAGTCAAAACGAAGAGTGTGAAATACATGCCATTCCTTCTCTCATTAGCCAATTTTATGAATGGTTGTTGCTGGACTGCATATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTGCTGGAGCAACTCAATTGATAGTGTATGCAATGTTCTACAAAACTACACCAAAAGAAGACCCTTCTAGCAAGCCTACTAATGAAGTGCAACTTTCTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

9.39

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	78 - 162	2.4e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	4 cut(s)	50, 67, 191, 276
AluI	AGCT	4 cut(s)	50, 67, 191, 276
Alw26I	GTCTC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	2 cut(s)	42, 59
AsuHPI	GGTGA	2 cut(s)	28, 217
BbsI	GAAGAC	1 cut(s)	504
BccI	CCATC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	1 cut(s)	159
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	84, 465
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	434
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	23, 428
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	512
CviAII	CATG	2 cut(s)	268, 328
CviJI	RGCY	9 cut(s)	50, 55, 67, 161, 191, 227, 276, 350, 514
CviKI_1	RGCY	9 cut(s)	50, 55, 67, 161, 191, 227, 276, 350, 514
DdeI	CTNAG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
FaeI	CATG	2 cut(s)	271, 331
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	2 cut(s)	267, 327
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	84, 465
Hin1II	CATG	2 cut(s)	271, 331
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HphI	GGTGA	2 cut(s)	28, 217
Hpy166II	GTNNAC	2 cut(s)	183, 403
Hpy8I	GTNNAC	2 cut(s)	183, 403
HpyAV	CCTTC	2 cut(s)	347, 513
HpyCH4III	ACNGT	2 cut(s)	23, 428
HpyCH4V	TGCA	5 cut(s)	173, 380, 437, 470, 529
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	271, 331
LmnI	GCTCC	3 cut(s)	47, 103, 446
LpnPI	CCDG	4 cut(s)	36, 114, 358, 429
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	34, 121
MboII	GAAGA	3 cut(s)	79, 325, 509
MfeI	CAATTG	2 cut(s)	438, 455
MluCI	AATT	4 cut(s)	143, 352, 438, 455
MnlI	CCTC	2 cut(s)	228, 291
MseI	TTAA	2 cut(s)	42, 59
MunI	CAATTG	2 cut(s)	438, 455
NdeI	CATATG	1 cut(s)	382
NlaIII	CATG	2 cut(s)	271, 331
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	160
PshBI	ATTAAT	2 cut(s)	42, 59
PspEI	GGTNACC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
SaqAI	TTAA	2 cut(s)	42, 59
SatI	GCNGC	1 cut(s)	159
SetI	ASST	6 cut(s)	52, 69, 123, 193, 220, 278
Sse9I	AATT	4 cut(s)	143, 352, 438, 455
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	23, 428
TasI	AATT	4 cut(s)	143, 352, 438, 455
TauI	GCSGC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	42, 59
Tru9I	TTAA	2 cut(s)	42, 59
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	5 cut(s)	224, 277, 374, 400, 537
TspGWI	ACGGA	1 cut(s)	127
VspI	ATTAAT	2 cut(s)	42, 59
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.