FvH4_6g50390

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37507889 .. 37512657
4769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50390.t1

Sequence Viewer

Length: 729 bp
ATGGTGACCCCAAGGACTGTGGTTGGTGTCGTAGGAAACGTCATATCTGCGTTTCTGTTCCTCTCCCCAATCCCTACGTTCATCAAGATATGTAAAAAGAAAGATGTGGAATCATTCGATCCAAAGATTTACCTTGCGACGGTGTTGAACTGTCTGTGTTGGTGTTACTATGGACTGCCGTTTGTTAATCCAAACAGCATTCTGGTAGTCACCATTAACGGAGCTGGGCTACTAATAGAGCTTATATATCTTGGCATATTCGTTTTTTATGCTCCTCCAAAAGGACGGAGGACGGTTTTCAATTGGTTAGTACCTGAATTTGTTTTCTTTGTGGCTGTTGTGGTTGTAACTATGTTGACAATATCCGAGCATGAGATGGCGATGAATAGACCTTTACGGGCTGTCGTGGTTGGTATTATATGTGATATCTTCAATGTCATCATGTATGGCTCTCCGCTGTTCATTGTGAAAAAGGTCATCAAAACTAAGAGTGTGAAGTACATGCCATTCACTATCTCATTGGCCAACTTCATGAATGGTTGTTGCTGGACTGCATATGCTCTTCTTGGGAAAGTTGACTACTTCATATTGATTAGCAACGGTCTTGGTGCATTTTTTGGACTAGTGCAGTTGATAGTCTATGGGATTATTTCGGGATGCTACACACCAAATGATGAAGACGATCCTAGCAAGCCAACTAATGAAGTGCAACTCTCTAGCAATGTCTAG

Protein Analysis

243

Amino Acids

26.89

Weight (kDa)

8.57

Isoelectric Point (pI)

28.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 7 - 94 8.5e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 136 - 217 2.8e-21 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 455
AclWI GGATC 2 cut(s) 113, 677
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 2 cut(s) 312, 500
AfiI CCNNNNNNNGG 2 cut(s) 139, 281
AgsI TTSAA 3 cut(s) 148, 301, 433
AhlI ACTAGT 1 cut(s) 622
AluBI AGCT 2 cut(s) 224, 241
AluI AGCT 2 cut(s) 224, 241
AlwI GGATC 2 cut(s) 113, 677
AoxI GGCC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 16, 202
BalI TGGCCA 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 684
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 163
BcuI ACTAGT 1 cut(s) 622
BfaI CTAG 4 cut(s) 623, 687, 717, 727
BmsI GCATC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 281
Bse3DI GCAATG 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 2 cut(s) 139, 281
BseMI GCAATG 1 cut(s) 727
BseRI GAGGAG 1 cut(s) 264
BseYI CCCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 647
BshFI GGCC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 139, 281
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 118, 682
BspACI CCGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 524
BspHI TCATGA 1 cut(s) 531
BspPI GGATC 2 cut(s) 113, 677
BspQI GCTCTTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 727
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 2 cut(s) 118, 682
BssT1I CCWWGG 1 cut(s) 11
Bst4CI ACNGT 5 cut(s) 19, 142, 152, 295, 602
Bst6I CTCTTC 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 692
BstDEI CTNAG 1 cut(s) 486
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 662
BstKTI GATC 2 cut(s) 121, 685
BstMBI GATC 2 cut(s) 118, 682
BstNSI RCATGY 1 cut(s) 505
BstPI GGTNACC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 684
BsuRI GGCC 1 cut(s) 524
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 662
Cac8I GCNNGC 1 cut(s) 692
CciI TCATGA 1 cut(s) 531
Csp6I GTAC 2 cut(s) 311, 499
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 4 cut(s) 371, 442, 502, 532
CviJI RGCY 8 cut(s) 224, 229, 241, 335, 401, 450, 524, 694
CviKI_1 RGCY 8 cut(s) 224, 229, 241, 335, 401, 450, 524, 694
CviQI GTAC 2 cut(s) 311, 499
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 120, 684
DpnII GATC 2 cut(s) 118, 682
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 11
Eco32I GATATC 1 cut(s) 427
Eco91I GGTNACC 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 4 cut(s) 374, 445, 505, 535
FatI CATG 4 cut(s) 370, 441, 501, 531
FauNDI CATATG 1 cut(s) 556
FokI GGATG 1 cut(s) 669
FspBI CTAG 4 cut(s) 623, 687, 717, 727
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 524
Hin1II CATG 4 cut(s) 374, 445, 505, 535
HincII GTYRAC 2 cut(s) 357, 577
HindII GTYRAC 2 cut(s) 357, 577
HinfI GANTC 1 cut(s) 110
HphI GGTGA 2 cut(s) 16, 202
Hpy166II GTNNAC 2 cut(s) 357, 577
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 85, 532, 654
Hpy8I GTNNAC 2 cut(s) 357, 577
Hpy99I CGWCG 1 cut(s) 142
HpyCH4III ACNGT 5 cut(s) 19, 142, 152, 295, 602
HpyCH4IV ACGT 2 cut(s) 39, 77
HpyCH4V TGCA 4 cut(s) 554, 611, 628, 709
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 2 cut(s) 39, 77
Hsp92II CATG 4 cut(s) 374, 445, 505, 535
Kzo9I GATC 2 cut(s) 118, 682
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 221, 277
LpnPI CCDG 4 cut(s) 188, 210, 327, 532
LweI GCATC 1 cut(s) 647
MaeI CTAG 4 cut(s) 623, 687, 717, 727
MaeII ACGT 2 cut(s) 39, 77
MaeIII GTNAC 4 cut(s) 4, 164, 208, 346
MalI GATC 2 cut(s) 120, 684
MboI GATC 2 cut(s) 118, 682
MboII GAAGA 3 cut(s) 421, 554, 689
MfeI CAATTG 1 cut(s) 301
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 2 cut(s) 301, 317
MluNI TGGCCA 1 cut(s) 524
MnlI CCTC 3 cut(s) 71, 282, 285
Mox20I TGGCCA 1 cut(s) 524
MscI TGGCCA 1 cut(s) 524
MseI TTAA 2 cut(s) 186, 216
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 457
MunI CAATTG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 198
NdeI CATATG 1 cut(s) 556
NdeII GATC 2 cut(s) 118, 682
NlaIII CATG 4 cut(s) 374, 445, 505, 535
NmuCI GTSAC 2 cut(s) 4, 208
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 224
RsaI GTAC 2 cut(s) 312, 500
RsaNI GTAC 2 cut(s) 311, 499
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 2 cut(s) 186, 216
Sau3AI GATC 2 cut(s) 118, 682
SetI ASST 8 cut(s) 42, 80, 135, 226, 243, 316, 394, 477
SfaNI GCATC 1 cut(s) 647
SpeI ACTAGT 1 cut(s) 622
Sse9I AATT 2 cut(s) 301, 317
SsiI CCGC 1 cut(s) 455
SspMI CTAG 4 cut(s) 623, 687, 717, 727
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 5 cut(s) 19, 142, 152, 295, 602
TaiI ACGT 2 cut(s) 42, 80
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 301, 317
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 186, 216
Tru9I TTAA 2 cut(s) 186, 216
TseFI GTSAC 2 cut(s) 4, 208
Tsp45I GTSAC 2 cut(s) 4, 208
TspDTI ATGAA 8 cut(s) 70, 398, 451, 520, 548, 574, 690, 717
TspGWI ACGGA 2 cut(s) 234, 301
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 505
XspI CTAG 4 cut(s) 623, 687, 717, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.