Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

66738045 .. 66739352

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0484300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGCGAGCCCAGCACCTGCAGTAGTAGATTTATTGCTACAAATCGAGCAATCAAAAGGTGGAGGAGATCCAGCCTGGCACGAGCGGCTAAACCCTGACCGTCAAGGTCGTCACCACCAATCTGGTCGAGAGGTCACCTCCAAGAATGGCGGTGCTCGATCCTCTCTCTCCTCTCTCCCTCTTCAGCCCCCTCGCATCACTGAGTGCCTCGTTAGCGATGAGACTGGAACCATTGTCTTCACTGCTCGCAATGACCAAGTTGACATTATGAAGCCTAGTACCACTGTGATTCCACGCAATACAAAGATTGACATGTTCATCAAAGGCACTATGAGGCTTGCAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCAGCTTTGAAGTTAAGGAGGTGAAAAGCGGAAAAAGTAGCTTAGAGCAGATATCTAGAGTTTACGGAAATCAGGTAATATCTTTGTCTAGTTTTAGGTGCATGCCCATAATGCTTCAATTCATTTATATTCTGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

174

Amino Acids

19.34

Weight (kDa)

9.0

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	45 - 124	5.6e-30	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AccBSI	CCGCTC	1 cut(s)	88
AciI	CCGC	3 cut(s)	88, 153, 411
AclWI	GGATC	2 cut(s)	65, 156
AcuI	CTGAAG	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	368, 392, 500
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	387, 423
AluI	AGCT	2 cut(s)	387, 423
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	65, 156
AlwNI	CAGNNNCTG	1 cut(s)	20
AsuHPI	GGTGA	3 cut(s)	107, 130, 415
BanII	GRGCYC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	3 cut(s)	279, 438, 471
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	81, 163
BseYI	CCCAGC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	14, 160
Bsp143I	GATC	2 cut(s)	70, 161
BspACI	CCGC	3 cut(s)	88, 153, 411
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	65, 156
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	70, 161
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	104, 289
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	5 cut(s)	10, 250, 342, 385, 485
BstDEI	CTNAG	2 cut(s)	204, 424
BstEII	GGTNACC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	73, 164
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	70, 161
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 88, 216, 493
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	2 cut(s)	319, 487
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	201, 243, 285
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	5 cut(s)	10, 250, 342, 385, 485
CaiI	CAGNNNCTG	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	316, 484
CviJI	RGCY	9 cut(s)	12, 77, 91, 190, 277, 340, 383, 387, 423
CviKI_1	RGCY	9 cut(s)	12, 77, 91, 190, 277, 340, 383, 387, 423
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	204, 424
DpnI	GATC	2 cut(s)	72, 163
DpnII	GATC	2 cut(s)	70, 161
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	2 cut(s)	319, 487
FaiI	YATR	6 cut(s)	272, 317, 335, 485, 491, 510
FatI	CATG	2 cut(s)	315, 483
Fnu4HI	GCNGC	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	3 cut(s)	279, 438, 471
GluI	GCNGC	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	319, 487
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	292
HphI	GGTGA	3 cut(s)	107, 130, 415
Hpy166II	GTNNAC	2 cut(s)	265, 445
Hpy188III	TCNNGA	2 cut(s)	131, 438
Hpy8I	GTNNAC	2 cut(s)	265, 445
HpyCH4III	ACNGT	2 cut(s)	104, 289
HpyCH4V	TGCA	3 cut(s)	23, 344, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 88, 216, 493
HpyF3I	CTNAG	2 cut(s)	204, 424
Hsp92II	CATG	2 cut(s)	319, 487
Kzo9I	GATC	2 cut(s)	70, 161
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	279, 438, 471
MaeIII	GTNAC	3 cut(s)	113, 136, 370
MalI	GATC	2 cut(s)	72, 163
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	70, 161
MboII	GAAGA	2 cut(s)	176, 232
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	14, 160
MluCI	AATT	1 cut(s)	500
MseI	TTAA	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	14, 88, 216, 493
NdeII	GATC	2 cut(s)	70, 161
NlaIII	CATG	2 cut(s)	319, 487
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	113, 136, 370
NspI	RCATGY	2 cut(s)	319, 487
PaeI	GCATGC	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	28
PciI	ACATGT	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	90
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	77
PspEI	GGTNACC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	70, 161
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	14, 160
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	21
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	3 cut(s)	88, 153, 411
SspMI	CTAG	3 cut(s)	279, 438, 471
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	104, 289
TaqI	TCGA	3 cut(s)	48, 130, 160
TasI	AATT	1 cut(s)	500
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	208, 250, 292
TseFI	GTSAC	3 cut(s)	113, 136, 370
Tsp45I	GTSAC	3 cut(s)	113, 136, 370
TspDTI	ATGAA	3 cut(s)	287, 310, 493
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	3 cut(s)	208, 250, 292
XbaI	TCTAGA	1 cut(s)	437
XceI	RCATGY	2 cut(s)	319, 487
XspI	CTAG	3 cut(s)	279, 438, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.