RchiOBHm_Chr1g0359411

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000596
Physical Location & Seq
Forward (+)
51374168 .. 51374887
720 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58447

Sequence Viewer

Length: 720 bp
ATGCTAGGTTTGTGGTCGGTGTGGTTGGGAATGTCATCTCTGGCGGCCTTTTCCTCTCCCCAATTCCTACGTTCATACAAATATGGAAAAAAAAAAGATGTGGAAGCTTTCGATCCAAGACCATACCTTACAACAGTGTTAAACTGTTTGTTCTGGTGTTACTACGGATTACCATTTGTTAATCCAAATAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATATATCTTATCATATTCTTCTATTATGCCGCAACAAAAGGACGAAAGAGGGTTGCTACATACTTTATATGTGAACTTATTTTATTTGGGGCTTTGGTGGCTGCAACTATGTTGGCAATACCTGAGCATAAGATGGCGCTGAATCGACCTTTGAGGGCTGTTGTAGTTGGTGTGATATGTGATTTTTTCAATGTCCTCATGTATGGCTCTCCTTTGTTCAACGTGCGAGATGTCATTAAAACTCAAAGTGTGAAATATATGTCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGTTGGACATCCTATGCTCTCATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTTGGCGCAATTTTTGGGGCATTTCAATTGATAGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTCTGGCAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA

Protein Analysis

239

Amino Acids

26.99

Weight (kDa)

9.09

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 11 - 92 6.2e-15 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 134 - 218 8.4e-21 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 267
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 516
AfaI GTAC 1 cut(s) 709
AgsI TTSAA 3 cut(s) 427, 457, 623
AluBI AGCT 2 cut(s) 107, 235
AluI AGCT 2 cut(s) 107, 235
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 1 cut(s) 107
AoxI GGCC 2 cut(s) 45, 516
ApeKI GCWGC 1 cut(s) 338
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 2 cut(s) 376, 605
BalI TGGCCA 1 cut(s) 518
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 364
BfaI CTAG 2 cut(s) 5, 512
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 3 cut(s) 45, 267, 339
BlsI GCNGC 3 cut(s) 46, 268, 340
BpiI GAAGAC 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 360
BseGI GGATG 1 cut(s) 545
BseMII CTCAG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 47, 518
BsiHKAI GWGCWC 1 cut(s) 237
BsnI GGCC 2 cut(s) 47, 518
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 44, 267
BspANI GGCC 2 cut(s) 47, 518
BspCNI CTCAG 1 cut(s) 352
BspPI GGATC 1 cut(s) 107
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 136, 146, 596
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 2 cut(s) 376, 605
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 675
BsuRI GGCC 2 cut(s) 47, 518
BtsCI GGATG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 2 cut(s) 376, 605
Csp6I GTAC 1 cut(s) 708
CviAII CATG 1 cut(s) 436
CviJI RGCY 9 cut(s) 47, 107, 223, 235, 329, 338, 395, 444, 518
CviKI_1 RGCY 9 cut(s) 47, 107, 223, 235, 329, 338, 395, 444, 518
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 1 cut(s) 360
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 1 cut(s) 439
FatI CATG 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 45, 267, 339
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 45, 267, 339
FspBI CTAG 2 cut(s) 5, 512
GlaI GCGC 2 cut(s) 375, 604
GluI GCNGC 3 cut(s) 45, 267, 339
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 47, 518
HhaI GCGC 2 cut(s) 376, 605
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 2 cut(s) 374, 603
HinP1I GCGC 2 cut(s) 374, 603
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 311, 571
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 2 cut(s) 311, 571
HpyCH4III ACNGT 3 cut(s) 136, 146, 596
HpyCH4IV ACGT 2 cut(s) 70, 459
HpyCH4V TGCA 3 cut(s) 341, 638, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 2 cut(s) 70, 459
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 2 cut(s) 374, 603
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 26, 139, 372, 539, 663
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 2 cut(s) 5, 512
MaeII ACGT 2 cut(s) 70, 459
MaeIII GTNAC 2 cut(s) 158, 202
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 247, 680
MfeI CAATTG 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 4 cut(s) 62, 216, 606, 623
MluNI TGGCCA 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 5 cut(s) 64, 279, 384, 443, 683
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
MseI TTAA 4 cut(s) 140, 180, 210, 474
Msp20I TGGCCA 1 cut(s) 518
MunI CAATTG 1 cut(s) 623
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 46, 268, 340
PshBI ATTAAT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 237
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 140, 180, 210, 474
SatI GCNGC 3 cut(s) 45, 267, 339
Sau3AI GATC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 10, 73, 109, 129, 237, 361, 388, 462, 675
Sse9I AATT 4 cut(s) 62, 216, 606, 623
SsiI CCGC 2 cut(s) 44, 267
SspMI CTAG 2 cut(s) 5, 512
SstI GAGCTC 1 cut(s) 237
TaaI ACNGT 3 cut(s) 136, 146, 596
TaiI ACGT 2 cut(s) 73, 462
TaqI TCGA 2 cut(s) 111, 382
TasI AATT 4 cut(s) 62, 216, 606, 623
TatI WGTACW 1 cut(s) 707
TauI GCSGC 2 cut(s) 47, 269
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 4 cut(s) 140, 180, 210, 474
Tru9I TTAA 4 cut(s) 140, 180, 210, 474
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 4 cut(s) 63, 568, 681, 708
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 141
VspI ATTAAT 1 cut(s) 210
XspI CTAG 2 cut(s) 5, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.