Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

16912096 .. 16912975

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13312.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGCATGTAGATGCTAGGTTCGTGGTCGGTGTGGCCGGGAACGTCATCTCTACTGGCCTTTTCCTCTCTCCAATTCCTACGTTCATAAAAATATGGAGAAAAAAAGATGTGAAAGCTTTCGATCCAAAACCTTACCTTGCAACATTGTTGAACTGTATGTTATGGTTTTACTACGGGTTGCCTTTCGTGAATCCAGACAGCATTTTAGTTGTTACCATCGACGGAATTGGGATAATTATAGAGTTCATATATCTTGTCATGTTCTTTTATTATCTTTCGACAAAAGGACGGAAGATGGTTGTGACGTACTTTGTATGTGAACTTGTTTTCTTTGGGGCAATTGTCACTGCAACTATGCTAGCAATACCTGAGCAAAAGATGATGATTAATCGACATTTGAGGGCTGTAGTAGTTGGTTTTTTCTGTGCTTGTATCGACGTGCTAATGTATATGTCTCCTCTATTCATTGTGGGTCATGTCATCGAAACAAAGAGTGTGAAATATATGTCATTCACGCTCACGGTTGCTAGCTTTCTGAACGGTTGTTGTTGGACATCATATGCTCTTATTGGGGAATTTGACTACTTCCTTTTGGTTAGCAACGGTATAGGTGCAGTTGCTGGAGTAGTTCAATTGATAGTCTACGCAATATATTACAAAGCTACGATAAAAGTCGAAGACATTTCTTACAAGTCTACTAATAAAGTTCATGCAGCACGCAAATACCATACAGTTTTGAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

250

Amino Acids

28.09

Weight (kDa)

9.02

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 95	7.7e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 221	7.2e-20	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	645, 698
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	154, 635, 742
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	3 cut(s)	119, 534, 665
AluI	AGCT	3 cut(s)	119, 534, 665
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	36, 58
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	578
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	40
AsuNHI	GCTAGC	2 cut(s)	361, 530
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	2 cut(s)	227, 292
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	3 cut(s)	18, 362, 531
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	2 cut(s)	365, 534
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	728
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	38, 60
BsiSI	CCGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	38, 60
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	38, 60
BspCNI	CTCAG	1 cut(s)	364
BspOI	GCTAGC	2 cut(s)	365, 534
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	5 cut(s)	158, 526, 545, 608, 736
BstC8I	GCNNGC	3 cut(s)	363, 532, 721
BstDEI	CTNAG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	728
BstV2I	GAAGAC	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	38, 60
BtrI	CACGTC	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	363, 532, 721
CaiI	CAGNNNCTG	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	4 cut(s)	8, 262, 479, 713
CviJI	RGCY	6 cut(s)	38, 60, 119, 407, 534, 665
CviKI_1	RGCY	6 cut(s)	38, 60, 119, 407, 534, 665
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	36
FaeI	CATG	4 cut(s)	11, 265, 482, 716
FatI	CATG	4 cut(s)	7, 261, 478, 712
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	2 cut(s)	645, 698
Fnu4HI	GCNGC	1 cut(s)	717
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	3 cut(s)	18, 362, 531
GluI	GCNGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	38, 60
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	11, 265, 482, 716
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	3 cut(s)	323, 646, 699
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	2 cut(s)	190, 197
Hpy8I	GTNNAC	3 cut(s)	323, 646, 699
Hpy99I	CGWCG	2 cut(s)	227, 443
HpyCH4III	ACNGT	5 cut(s)	158, 526, 545, 608, 736
HpyCH4IV	ACGT	4 cut(s)	45, 83, 308, 441
HpyCH4V	TGCA	5 cut(s)	7, 143, 353, 617, 716
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	4 cut(s)	45, 83, 308, 441
Hsp92II	CATG	4 cut(s)	11, 265, 482, 716
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	42, 52, 210, 384, 609
Lsp1109I	GCAGC	1 cut(s)	728
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	18, 362, 531
MaeII	ACGT	4 cut(s)	45, 83, 308, 441
MaeIII	GTNAC	3 cut(s)	214, 304, 346
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	307, 692
MfeI	CAATTG	2 cut(s)	342, 635
MluCI	AATT	6 cut(s)	75, 228, 237, 342, 578, 635
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	3 cut(s)	77, 396, 471
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	2 cut(s)	342, 635
NciI	CCSGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	1 cut(s)	124
NheI	GCTAGC	2 cut(s)	361, 530
NlaIII	CATG	4 cut(s)	11, 265, 482, 716
NmuCI	GTSAC	2 cut(s)	304, 346
NspI	RCATGY	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	6 cut(s)	75, 228, 237, 342, 578, 635
SspMI	CTAG	3 cut(s)	18, 362, 531
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	5 cut(s)	158, 526, 545, 608, 736
TaiI	ACGT	4 cut(s)	48, 86, 311, 444
TaqI	TCGA	7 cut(s)	123, 222, 281, 394, 438, 486, 678
TasI	AATT	6 cut(s)	75, 228, 237, 342, 578, 635
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	2 cut(s)	304, 346
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	2 cut(s)	304, 346
TspDTI	ATGAA	4 cut(s)	76, 238, 457, 701
TspGWI	ACGGA	2 cut(s)	240, 307
TspRI	CASTG	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	11
XmiI	GTMKAC	2 cut(s)	645, 698
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	3 cut(s)	18, 362, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.