Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

51485891 .. 51486916

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58459

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTATGACTCTCCTTTGTTCAATGTGAGAGATGTCATTAAAACCAGAAGTGTGAAATATATCTCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTTTGCTTGCTGGATATCCTATGCTCTTATTGAAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTTTTGGAGCATTTCAATTGATAATTTATGCAATATACTATAGAATTACACCAAAAGATGAAGACCTCTCTGACAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

5.13

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	1 - 73	5.4e-16	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	22, 131, 191
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	1 cut(s)	83
CviKI_1	RGCY	1 cut(s)	83
CviQI	GTAC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	114
FaiI	YATR	6 cut(s)	6, 60, 120, 204, 211, 216
FspBI	CTAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	173, 206, 268
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	58, 94, 104
MaeI	CTAG	1 cut(s)	77
MboII	GAAGA	1 cut(s)	248
MfeI	CAATTG	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	4 cut(s)	174, 191, 198, 219
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	1 cut(s)	251
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	83
MunI	CAATTG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	39
SchI	GAGTC	1 cut(s)	2
SetI	ASST	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	214
SgeI	CNNG	7 cut(s)	57, 89, 103, 117, 121, 179, 262
Sse9I	AATT	4 cut(s)	174, 191, 198, 219
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	164
TasI	AATT	4 cut(s)	174, 191, 198, 219
TatI	WGTACW	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TspDTI	ATGAA	3 cut(s)	136, 249, 276
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.