Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

2110063 .. 2110581

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCGCAGTCCTACATTTTGGAAAATCATTAAGAAGAAGGACACGGAGGAGTTCAAGCCGGACCCTTACATGGCAACAGTACTGAACTGCTTGTTCTGGATCTTCTACGGCATGCCGTTTGTTCACCCTGACAGCACTCTTGTGGTCACCATTAACGCCGTCGGCCTTGCTCTCGAGCTCATCTACCTCACCATCTTCGTCGTTTATGCTTCGGCCAAAGGAAGGAAGAAGGTGGGTTTATGGCTTGCAGGTGAAGTAATCTTCTTCGCCGCGGTGGTTCTGATCACTCTGCTATGCGTGCACGGCACCAAGAACAGGTCTATGGTGGTTGGTATCATCTGTGATATTTTCAACATCATTATGTACTCTTCCCCTCTTACTATCATGGTAAGTAATTATCGATTAATCCGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

9.38

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	305
AccII	CGCG	1 cut(s)	272
AciI	CCGC	2 cut(s)	270, 272
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	2 cut(s)	81, 365
AfiI	CCNNNNNNNGG	3 cut(s)	70, 222, 315
AgsI	TTSAA	2 cut(s)	55, 352
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	2 cut(s)	180, 303
Alw44I	GTGCAC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	163, 213
ApaLI	GTGCAC	1 cut(s)	299
AseI	ATTAAT	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	116, 139, 181, 263
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	180, 303
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	100, 124, 143, 319
BclI	TGATCA	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	63, 307
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 222, 315
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	70, 222, 315
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	165, 215
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	180, 303
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	70, 222, 315
BsnI	GGCC	2 cut(s)	165, 215
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	180, 303
Bsp143I	GATC	2 cut(s)	99, 282
BspACI	CCGC	2 cut(s)	270, 272
BspANI	GGCC	2 cut(s)	165, 215
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	63, 307
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	99, 282
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	113, 246, 299
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	102, 285
BstMBI	GATC	2 cut(s)	99, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 303
BstNSI	RCATGY	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	165, 215
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	3 cut(s)	113, 246, 299
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	61
Cfr42I	CCGCGG	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	80, 364
CviAII	CATG	3 cut(s)	70, 112, 385
CviJI	RGCY	5 cut(s)	58, 165, 178, 215, 244
CviKI_1	RGCY	5 cut(s)	58, 165, 178, 215, 244
CviQI	GTAC	2 cut(s)	80, 364
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	101, 284
DpnII	GATC	2 cut(s)	99, 282
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	3 cut(s)	73, 115, 388
FaiI	YATR	8 cut(s)	71, 113, 207, 241, 295, 323, 362, 386
FatI	CATG	3 cut(s)	69, 111, 384
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	165, 215
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	73, 115, 388
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	4 cut(s)	116, 139, 181, 263
Hpy166II	GTNNAC	2 cut(s)	124, 301
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	2 cut(s)	97, 173
Hpy8I	GTNNAC	2 cut(s)	124, 301
Hpy99I	CGWCG	2 cut(s)	164, 203
HpyAV	CCTTC	3 cut(s)	31, 216, 223
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	248, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 303
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	73, 115, 388
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	282
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	99, 282
LpnPI	CCDG	5 cut(s)	72, 82, 141, 234, 301
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	101, 284
MboI	GATC	2 cut(s)	99, 282
MboII	GAAGA	7 cut(s)	46, 94, 187, 238, 253, 256, 360
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	180, 303
MluCI	AATT	1 cut(s)	394
MnlI	CCTC	3 cut(s)	40, 197, 384
MseI	TTAA	3 cut(s)	30, 153, 404
MslI	CAYNNNNRTG	2 cut(s)	140, 359
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	298, 303
NdeII	GATC	2 cut(s)	99, 282
NlaIII	CATG	3 cut(s)	73, 115, 388
NlaIV	GGNNCC	2 cut(s)	63, 307
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	63, 307
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	2 cut(s)	81, 365
RsaNI	GTAC	2 cut(s)	80, 364
RseI	CAYNNNNRTG	2 cut(s)	140, 359
SacI	GAGCTC	1 cut(s)	180
SacII	CCGCGG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	30, 153, 404
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	99, 282
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	180, 303
SetI	ASST	5 cut(s)	180, 189, 234, 253, 320
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	140, 359
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	115
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	270, 272
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	174, 400
TasI	AATT	1 cut(s)	394
TatI	WGTACW	2 cut(s)	79, 363
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	3 cut(s)	30, 153, 404
Tru9I	TTAA	3 cut(s)	30, 153, 404
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	2 cut(s)	59, 398
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	404
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.