Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

85786483 .. 85788559

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG637200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTTGCATCACATCTACCAACTTTAATACTTTGGATAAATTGTGCTTTTTATTCTTGGCATGCAGTCCTACGTTCTTACAAATATGGAGAAAGAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCTACAGTGTTAAACTGTTTGTTTTGGTGTTATTACGGAATGCCATTCGTCAATCCAAACAGTATTTTAGTTGTCACCATTAATGGAGCTGGGCTAGTAATAGAGCTTATATATCTTGCTATATTCTTCCTTTATGTTCCAGCAAAAGGACGGAAAAAGGTTACCACATACTTAGTATGTGAATTTGTTTTCTTTGCGGCTATTGTGGTTGCAACTATGTTGACAATATCTGAGCATAAGATGGTGATGAATCGACCTCTGCGGGCTGTCGTAGTTGGTATTATCTGTGATGTTTTCAATGTTATCATGTATAGCTCTCCTCTGTTCATTGTGAGAAAAGTCATCAAAACGAAGAGTGTGAAATACATGCCATTCCTTCTCTCATTGGCCAATTTTCTGAATGGTTGTTGTTGGACTGCATATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTGCTGGAGCAATTCAATTGATAGTGTATGCAAAATACTACAAAACTACACCAAAAGAAGACCCTTCTAGCAAGCCTACTAATGAAGTGCAACTTTCTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

9.15

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	17 - 93	1.5e-15	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	1.1e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	329, 394
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	430, 626
AluBI	AGCT	4 cut(s)	110, 221, 238, 447
AluI	AGCT	4 cut(s)	110, 221, 238, 447
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	199, 388
BalI	TGGCCA	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	675
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	2 cut(s)	227, 678
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	441
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	605
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	329, 394
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	605
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	4 cut(s)	139, 149, 194, 599
Bst6I	CTCTTC	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	64, 396, 683
BstDEI	CTNAG	2 cut(s)	304, 363
BstEII	GGTNACC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	66, 502
BstPI	GGTNACC	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	64, 396, 683
CviAII	CATG	3 cut(s)	63, 439, 499
CviJI	RGCY	9 cut(s)	110, 221, 226, 238, 332, 398, 447, 521, 685
CviKI_1	RGCY	9 cut(s)	110, 221, 226, 238, 332, 398, 447, 521, 685
DdeI	CTNAG	2 cut(s)	304, 363
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
FaeI	CATG	3 cut(s)	66, 442, 502
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	3 cut(s)	62, 438, 498
FauI	CCCGC	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	227, 678
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	66, 442, 502
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	2 cut(s)	199, 388
Hpy166II	GTNNAC	2 cut(s)	354, 574
Hpy188I	TCNGA	2 cut(s)	364, 531
Hpy8I	GTNNAC	2 cut(s)	354, 574
HpyAV	CCTTC	2 cut(s)	518, 684
HpyCH4III	ACNGT	4 cut(s)	139, 149, 194, 599
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	7 cut(s)	9, 66, 344, 551, 608, 641, 700
HpyF3I	CTNAG	2 cut(s)	304, 363
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	66, 442, 502
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	218, 617
LpnPI	CCDG	3 cut(s)	207, 285, 600
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	2 cut(s)	227, 678
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	205, 292
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	250, 496, 680
MfeI	CAATTG	2 cut(s)	609, 626
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	6 cut(s)	41, 314, 523, 609, 621, 626
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	2 cut(s)	399, 462
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	3 cut(s)	27, 143, 213
Msp20I	TGGCCA	1 cut(s)	521
MunI	CAATTG	2 cut(s)	609, 626
Mva1269I	GAATGC	1 cut(s)	177
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	66, 442, 502
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	66, 502
PaeI	GCATGC	1 cut(s)	66
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	27, 143, 213
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	115
SetI	ASST	9 cut(s)	77, 112, 127, 132, 223, 240, 294, 391, 449
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	6 cut(s)	41, 314, 523, 609, 621, 626
SsiI	CCGC	2 cut(s)	329, 394
SspMI	CTAG	2 cut(s)	227, 678
TaaI	ACNGT	4 cut(s)	139, 149, 194, 599
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	114, 385
TasI	AATT	6 cut(s)	41, 314, 523, 609, 621, 626
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	27, 143, 213
Tru9I	TTAA	3 cut(s)	27, 143, 213
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	4 cut(s)	395, 448, 571, 708
TspGWI	ACGGA	2 cut(s)	183, 298
TspRI	CASTG	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	66, 502
XspI	CTAG	2 cut(s)	227, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.