Rh2DG654400

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
87936367 .. 87942738
6372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG654400.1

Sequence Viewer

Length: 1614 bp
ATGGGGCACACAGCTACTGCTAGGTTCGTGGTCGGTGTGATTGGAAATGCCATCTCTGCCGGGCTTTTTCTTTCCCCAGTTCCTACGTTCTTACAAATATGGAGAAAGAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCTACAGTGTTAAACTGTTTGTTTTGGTGTTATTACGGAATGCCATTCGTCAATCCAAACAGTATTTTAGTTGTCACCATTAATGGAGCTGGGCTAGTAATAGAGCTTATATATCTTGCTATATTCTTCCTTTATGCTCCAGCAAAAGGACGGAAAAAGGTTACCACATTCTTAGTAGGTGAATTTGTTTTCTTTGCGGCTATTGTGGTTGCAACTATGTTGACAATATCTGAGCATAAGATGATGATGAATCGACCTCTGCGGGCTGTTGTAGTTGGTATTATCTGTGATGTTTTCAATGTTATCATGTATAGCTCTCCTCTGTTCATTGTGAAAAAAGTCATCAAAACGAAGAGTGTGAAATACATGCCATTCCTTCTCTCATTGGCCAATTTTCTGAATGGTTGTTGCTGGACTGCATATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCATTTGCTGGAGCAATTCAATTGATAGTGTATGCAATATTCTACAAAACTACACCAAAAGAAGACCCTTCTAGCAAGCCTACTAATGAAGTGCAACTTTCTACTAATAATTTGTTCTGTAACTACTATCTACTATATAAATGGTGCGTTTACGGAGGTCTATTAACCTTTCCTCTTCCTGATTGTCCTGCAGTGGCACAACTCACAACTAAGATCAAGCATTTGCCTTCAGTTTTACACAAAAAGGATAAGCACTCTCTTAAGGGTCTTCAAGCAATGAAGTTGAAGATCTGCCTTGACCGTGAATTCAAAATATTTCTTCAAGCATGTCCGAAGGGAGGGATATATATAGGAGCCAAAGCAGTTTTTGTCACTCACGATTTCTTAACAAGTATGGACATGCGCTGGTTACTTCTTAGTGTAGGTCTTCCATTAGAAGAACAAGCACCGATTCTTGAGGAAATAATAACTCAATTTGCTCAAGTGGCTGTCCCCGAGCTGTCTATTACTGTGGTAATACTGCACATCAAAATTCGCTCATTAGGTAGTGTCGACTATCAGGATATCATTGATTTTGTTGCAAGAGAACCGATCAATGTTAATTTAGATGCTTCCCCTATTTATGACACTCCTGTGCATTTGCATGCTTCTACGGTGTCCTTGCTAGGAACATATATGTCACTTCTTACTATTCCTGCATCTAGATCCTCGATTGAAGGTTTGAAGAAAGTGAGATTCGATAGTTTGGAAGAAGATGTTATCCGAGAGACTCCAACATGTGCTATATGTATCAAGGACTTTGTAGAATGTGTTGATGAACTGATTACTAGTTTACCCTGCGCTCACCATTATCATGTAGATTGCATTGTCCAGTGGCTGAAGAGAGATCACACTTGTCCCTTGTGCCGATACCGAATGCCACCTGCACGTATGGACGAGGATAGGGACGGGGACGGGGACGGGGACAGGGACGCAGTTGAGCCATCAAATCCCTAA

Protein Analysis

537

Amino Acids

60.02

Weight (kDa)

7.8

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 97 4.8e-21 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 139 - 222 2e-22 Sugar efflux transporter for intercellular exchange
zf-RING_2 PF13639 465 - 509 1.1e-10 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1549
Acc36I ACCTGC 1 cut(s) 1549
AccI GTMKAC 1 cut(s) 1170
AciI CCGC 2 cut(s) 341, 406
AclWI GGATC 2 cut(s) 122, 1317
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 3 cut(s) 326, 923, 1149
AcuI CTGAAG 2 cut(s) 831, 1517
AfiI CCNNNNNNNGG 2 cut(s) 290, 956
AflII CTTAAG 1 cut(s) 878
AflIII ACRYGT 1 cut(s) 1394
AgsI TTSAA 8 cut(s) 442, 638, 890, 904, 928, 941, 1334, 1342
AhlI ACTAGT 1 cut(s) 1445
AleI CACNNNNGTG 1 cut(s) 1250
AluBI AGCT 6 cut(s) 14, 122, 233, 250, 459, 1117
AluI AGCT 6 cut(s) 14, 122, 233, 250, 459, 1117
Alw26I GTCTC 2 cut(s) 617, 1379
AlwI GGATC 2 cut(s) 122, 1317
AlwNI CAGNNNCTG 2 cut(s) 17, 1495
Ama87I CYCGRG 1 cut(s) 1112
AoxI GGCC 1 cut(s) 531
ApoI RAATTY 3 cut(s) 326, 923, 1149
AseI ATTAAT 1 cut(s) 225
AspLEI GCGC 2 cut(s) 1023, 1460
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 211, 335, 1454
AvaI CYCGRG 1 cut(s) 1112
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 533
BbsI GAAGAC 3 cut(s) 687, 878, 1037
BccI CCATC 2 cut(s) 59, 1609
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 617, 1379
BcuI ACTAGT 1 cut(s) 1445
BfaI CTAG 6 cut(s) 21, 239, 690, 1283, 1320, 1446
BfmI CTRYAG 2 cut(s) 147, 807
BfrI CTTAAG 1 cut(s) 878
BfuAI ACCTGC 1 cut(s) 1549
BglII AGATCT 1 cut(s) 906
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 1112
BmiI GGNNCC 1 cut(s) 973
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 1216, 1325
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 3 cut(s) 687, 878, 1037
BpmI CTGGAG 2 cut(s) 267, 648
BpuEI CTTGAG 2 cut(s) 1083, 1094
BpuMI CCSGG 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 1547
BsaI GGTCTC 1 cut(s) 617
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 956
Bse1I ACTGG 2 cut(s) 77, 1489
Bse3DI GCAATG 1 cut(s) 900
BseLI CCNNNNNNNGG 2 cut(s) 290, 956
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 77, 1489
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 2 cut(s) 1124, 1527
BshFI GGCC 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 1112
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 7 cut(s) 1094, 1500, 1577, 1583, 1589, 1595, 1601
BslI CCNNNNNNNGG 2 cut(s) 290, 956
BsmAI GTCTC 2 cut(s) 617, 1379
BsmFI GGGAC 7 cut(s) 1094, 1500, 1577, 1583, 1589, 1595, 1601
BsmI GAATGC 2 cut(s) 189, 1539
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 1112
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
BspACI CCGC 2 cut(s) 341, 406
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 973
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 1549
BspPI GGATC 2 cut(s) 122, 1317
BspTI CTTAAG 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 2 cut(s) 77, 1489
BssMI GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
Bst4CI ACNGT 7 cut(s) 151, 161, 206, 611, 920, 1129, 1273
Bst6I CTCTTC 3 cut(s) 491, 798, 1493
BstAFI CTTAAG 1 cut(s) 878
BstBAI YACGTR 1 cut(s) 1547
BstC8I GCNNGC 3 cut(s) 408, 695, 1263
BstDEI CTNAG 4 cut(s) 316, 375, 828, 1034
BstEII GGTNACC 1 cut(s) 304
BstHHI GCGC 2 cut(s) 1023, 1460
BstKTI GATC 6 cut(s) 130, 834, 909, 1212, 1325, 1507
BstMAI GTCTC 2 cut(s) 617, 1379
BstMBI GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
BstMWI GCNNNNNNNGC 2 cut(s) 56, 1103
BstNSI RCATGY 5 cut(s) 514, 948, 1021, 1265, 1398
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 2 cut(s) 147, 807
BstSLI GKGCMC 1 cut(s) 9
BstV2I GAAGAC 3 cut(s) 687, 878, 1037
BstX2I RGATCY 2 cut(s) 906, 1322
BstYI RGATCY 2 cut(s) 906, 1322
BsuRI GGCC 1 cut(s) 533
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 156, 816, 1496
BveI ACCTGC 1 cut(s) 1549
Cac8I GCNNGC 3 cut(s) 408, 695, 1263
CaiI CAGNNNCTG 2 cut(s) 17, 1495
CfoI GCGC 2 cut(s) 1023, 1460
CseI GACGC 1 cut(s) 1598
CviAII CATG 7 cut(s) 451, 511, 945, 1018, 1262, 1395, 1472
DdeI CTNAG 4 cut(s) 316, 375, 828, 1034
DpnI GATC 6 cut(s) 129, 833, 908, 1211, 1324, 1506
DpnII GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 491, 798, 1493
EarI CTCTTC 3 cut(s) 491, 798, 1493
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 1183
Eco57I CTGAAG 2 cut(s) 831, 1517
Eco88I CYCGRG 1 cut(s) 1112
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 923
EcoRV GATATC 1 cut(s) 1183
FaeI CATG 7 cut(s) 454, 514, 948, 1021, 1265, 1398, 1475
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FaqI GGGAC 7 cut(s) 1094, 1500, 1577, 1583, 1589, 1595, 1601
FatI CATG 7 cut(s) 450, 510, 944, 1017, 1261, 1394, 1471
FauI CCCGC 1 cut(s) 399
FauNDI CATATG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 1170
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 6 cut(s) 21, 239, 690, 1283, 1320, 1446
GlaI GCGC 2 cut(s) 1022, 1459
GluI GCNGC 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 267, 648
HaeIII GGCC 1 cut(s) 533
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 1598
HhaI GCGC 2 cut(s) 1023, 1460
Hin1II CATG 7 cut(s) 454, 514, 948, 1021, 1265, 1398, 1475
Hin6I GCGC 2 cut(s) 1021, 1458
HinP1I GCGC 2 cut(s) 1021, 1458
HincII GTYRAC 2 cut(s) 366, 1171
HindII GTYRAC 2 cut(s) 366, 1171
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 4 cut(s) 394, 1069, 1353, 1387
HpaII CCGG 1 cut(s) 60
HphI GGTGA 3 cut(s) 211, 335, 1454
Hpy166II GTNNAC 5 cut(s) 366, 586, 769, 1171, 1451
Hpy188I TCNGA 4 cut(s) 376, 543, 951, 1382
Hpy188III TCNNGA 5 cut(s) 797, 995, 1073, 1178, 1320
Hpy8I GTNNAC 5 cut(s) 366, 586, 769, 1171, 1451
HpyAV CCTTC 5 cut(s) 530, 696, 855, 946, 1328
HpyCH4III ACNGT 7 cut(s) 151, 161, 206, 611, 920, 1129, 1273
HpyCH4IV ACGT 2 cut(s) 86, 1546
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 1103
HpyF3I CTNAG 4 cut(s) 316, 375, 828, 1034
HpySE526I ACGT 2 cut(s) 86, 1546
Hsp92II CATG 7 cut(s) 454, 514, 948, 1021, 1265, 1398, 1475
HspAI GCGC 2 cut(s) 1021, 1458
Kzo9I GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
LmnI GCTCC 4 cut(s) 230, 286, 629, 971
LweI GCATC 2 cut(s) 1216, 1325
MaeI CTAG 6 cut(s) 21, 239, 690, 1283, 1320, 1446
MaeII ACGT 2 cut(s) 86, 1546
MaeIII GTNAC 6 cut(s) 217, 304, 737, 988, 1026, 1296
MalI GATC 6 cut(s) 129, 833, 908, 1211, 1324, 1506
MboI GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 2 cut(s) 906, 1322
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 9 cut(s) 326, 535, 633, 638, 727, 923, 1091, 1149, 1219
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 1381
MmeI TCCRAC 1 cut(s) 1415
MnlI CCTC 8 cut(s) 411, 474, 767, 801, 950, 1069, 1336, 1549
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 6 cut(s) 155, 225, 782, 879, 1004, 1218
MslI CAYNNNNRTG 3 cut(s) 1250, 1260, 1470
Msp20I TGGCCA 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 2 cut(s) 189, 1539
MwoI GCNNNNNNNGC 2 cut(s) 56, 1103
NciI CCSGG 1 cut(s) 61
NdeI CATATG 1 cut(s) 565
NdeII GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
NlaIII CATG 7 cut(s) 454, 514, 948, 1021, 1265, 1398, 1475
NlaIV GGNNCC 1 cut(s) 973
NmuCI GTSAC 3 cut(s) 217, 988, 1296
NspI RCATGY 5 cut(s) 514, 948, 1021, 1265, 1398
OliI CACNNNNGTG 1 cut(s) 1250
PaeI GCATGC 1 cut(s) 1265
PaqCI CACCTGC 1 cut(s) 1549
PciI ACATGT 1 cut(s) 1394
PctI GAATGC 2 cut(s) 189, 1539
PfeI GAWTC 3 cut(s) 394, 1069, 1353
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 1381
PpsI GAGTC 1 cut(s) 1381
Ppu21I YACGTR 1 cut(s) 1547
PscI ACATGT 1 cut(s) 1394
PshBI ATTAAT 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 973
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 2 cut(s) 17, 1495
PsuI RGATCY 2 cut(s) 906, 1322
RseI CAYNNNNRTG 3 cut(s) 1250, 1260, 1470
SalI GTCGAC 1 cut(s) 1169
SaqAI TTAA 6 cut(s) 155, 225, 782, 879, 1004, 1218
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 6 cut(s) 127, 831, 906, 1209, 1322, 1504
SchI GAGTC 1 cut(s) 1381
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 2 cut(s) 1216, 1325
SfcI CTRYAG 2 cut(s) 147, 807
SmiMI CAYNNNNRTG 3 cut(s) 1250, 1260, 1470
SmlI CTYRAG 3 cut(s) 878, 1073, 1098
SmoI CTYRAG 3 cut(s) 878, 1073, 1098
SpeI ACTAGT 1 cut(s) 1445
SphI GCATGC 1 cut(s) 1265
Sse9I AATT 9 cut(s) 326, 535, 633, 638, 727, 923, 1091, 1149, 1219
SsiI CCGC 2 cut(s) 341, 406
SspI AATATT 2 cut(s) 657, 933
SspMI CTAG 6 cut(s) 21, 239, 690, 1283, 1320, 1446
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 7 cut(s) 151, 161, 206, 611, 920, 1129, 1273
TaiI ACGT 2 cut(s) 89, 1549
TaqI TCGA 5 cut(s) 126, 397, 1170, 1328, 1356
TasI AATT 9 cut(s) 326, 535, 633, 638, 727, 923, 1091, 1149, 1219
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 3 cut(s) 394, 1069, 1353
Tru1I TTAA 6 cut(s) 155, 225, 782, 879, 1004, 1218
Tru9I TTAA 6 cut(s) 155, 225, 782, 879, 1004, 1218
TscAI CASTG 3 cut(s) 156, 816, 1496
TseFI GTSAC 3 cut(s) 217, 988, 1296
Tsp45I GTSAC 3 cut(s) 217, 988, 1296
TspDTI ATGAA 6 cut(s) 407, 460, 583, 720, 911, 1449
TspGWI ACGGA 3 cut(s) 195, 310, 786
TspRI CASTG 3 cut(s) 156, 816, 1496
Vha464I CTTAAG 1 cut(s) 878
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 3 cut(s) 326, 923, 1149
XbaI TCTAGA 1 cut(s) 1319
XceI RCATGY 5 cut(s) 514, 948, 1021, 1265, 1398
XmiI GTMKAC 1 cut(s) 1170
XspI CTAG 6 cut(s) 21, 239, 690, 1283, 1320, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.