Rh1AG221100

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
42256264 .. 42257630
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG221100.1

Sequence Viewer

Length: 717 bp
ATGGTGCACACAGATGCTAGGTTCGTGGTCGGTGTGGTTGGAAACGTGATCTCTGGTGGCCTTTTCCTCTCCCCAATTCCTACTTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTGTTGAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCGTTAATCCAAACAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATATATCTTATCATATTCTTCTATTATGCCGCAGCAAAAGGACGAAAGAGGGTTGTTACATACTTTATATGCGAACTTACTTTATTTGGGGCTCTGGTGGCTACAACTATGTTGGCAATACCTGATCATAAGATGGTGATGAATCGACATTTGAGGGCTGTCATAGTTGGTGTGATTTGTGATTTTTTCAATGTTCTTATGTATGGCTCTCCTTTGTTCAACCTGAGAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCATTCACTCTCTTAGTGGCGAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTTTTGGAGCACTTCAATTGATAGTTTATGCAAGATACTACATAACTACACCAAAAGATGAGACAACAAATGAAGTGCAGCTTTGTACTAATGTCTAA

Protein Analysis

238

Amino Acids

26.85

Weight (kDa)

8.91

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 96 5.1e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 138 - 220 9.7e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 119
AfaI GTAC 1 cut(s) 706
AgsI TTSAA 4 cut(s) 154, 439, 469, 635
AluBI AGCT 3 cut(s) 119, 247, 700
AluI AGCT 3 cut(s) 119, 247, 700
Alw21I GWGCWC 3 cut(s) 9, 249, 631
Alw26I GTCTC 2 cut(s) 614, 674
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 281, 697
AseI ATTAAT 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 9
BanII GRGCYC 2 cut(s) 249, 343
Bbv12I GWGCWC 3 cut(s) 9, 249, 631
BbvI GCAGC 2 cut(s) 293, 709
BccI CCATC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 614, 674
BfaI CTAG 1 cut(s) 18
BisI GCNGC 3 cut(s) 279, 282, 698
BlsI GCNGC 3 cut(s) 280, 283, 699
BmsI GCATC 1 cut(s) 4
BsaI GGTCTC 1 cut(s) 614
BseGI GGATG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 293, 709
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 3 cut(s) 9, 249, 631
BsmAI GTCTC 2 cut(s) 614, 674
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 614
Bsp1286I GDGCHC 4 cut(s) 9, 249, 343, 631
Bsp143I GATC 3 cut(s) 48, 124, 373
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 465
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 614
BssMI GATC 3 cut(s) 48, 124, 373
Bst4CI ACNGT 3 cut(s) 148, 158, 608
BstDEI CTNAG 3 cut(s) 473, 492, 523
BstF5I GGATG 1 cut(s) 557
BstKTI GATC 3 cut(s) 51, 127, 376
BstMAI GTCTC 2 cut(s) 614, 674
BstMBI GATC 3 cut(s) 48, 124, 373
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 293, 709
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 153
Csp6I GTAC 1 cut(s) 705
CviJI RGCY 9 cut(s) 60, 119, 235, 247, 341, 350, 407, 456, 700
CviKI_1 RGCY 9 cut(s) 60, 119, 235, 247, 341, 350, 407, 456, 700
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 3 cut(s) 473, 492, 523
DpnI GATC 3 cut(s) 50, 126, 375
DpnII GATC 3 cut(s) 48, 124, 373
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 249, 343
Eco31I GGTCTC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 249, 343
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 279, 282, 698
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 2 cut(s) 249, 343
Fsp4HI GCNGC 3 cut(s) 279, 282, 698
FspBI CTAG 1 cut(s) 18
GluI GCNGC 3 cut(s) 279, 282, 698
HaeIII GGCC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 391
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 7, 583
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 2 cut(s) 7, 583
HpyCH4III ACNGT 3 cut(s) 148, 158, 608
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 7, 617, 650, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 473, 492, 523
HpySE526I ACGT 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 48, 124, 373
LmnI GCTCC 1 cut(s) 626
LpnPI CCDG 7 cut(s) 39, 151, 329, 384, 485, 538, 551
Lsp1109I GCAGC 2 cut(s) 293, 709
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 170, 214, 304
MalI GATC 3 cut(s) 50, 126, 375
MboI GATC 3 cut(s) 48, 124, 373
MboII GAAGA 1 cut(s) 259
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 4 cut(s) 9, 249, 343, 631
MluCI AATT 4 cut(s) 75, 228, 618, 635
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 77, 291, 396
MseI TTAA 3 cut(s) 192, 222, 486
MslI CAYNNNNRTG 1 cut(s) 12
MunI CAATTG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 3 cut(s) 48, 124, 373
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 3 cut(s) 280, 283, 699
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 192, 222, 486
SatI GCNGC 3 cut(s) 279, 282, 698
Sau3AI GATC 3 cut(s) 48, 124, 373
SduI GDGCHC 4 cut(s) 9, 249, 343, 631
SetI ASST 9 cut(s) 23, 48, 121, 136, 141, 249, 373, 474, 702
SfaNI GCATC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 4 cut(s) 75, 228, 618, 635
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 3 cut(s) 148, 158, 608
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 123, 394
TasI AATT 4 cut(s) 75, 228, 618, 635
TatI WGTACW 1 cut(s) 704
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 3 cut(s) 192, 222, 486
Tru9I TTAA 3 cut(s) 192, 222, 486
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 281, 697
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 4 cut(s) 76, 404, 580, 705
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 222
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.