Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

19288926 .. 19289734

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGCACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

211

Amino Acids

23.23

Weight (kDa)

5.21

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	7.1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	2 cut(s)	88, 570
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	4 cut(s)	141, 327, 340, 375
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	2 cut(s)	92, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 604, 626
AluI	AGCT	4 cut(s)	53, 199, 604, 626
Alw21I	GWGCWC	3 cut(s)	492, 544, 606
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	488, 540
AlwI	GGATC	4 cut(s)	141, 327, 340, 375
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	620
ApaLI	GTGCAC	2 cut(s)	488, 540
ApeKI	GCWGC	3 cut(s)	50, 293, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	4 cut(s)	164, 306, 492, 544
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	262, 606
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	3 cut(s)	492, 544, 606
BbvI	GCAGC	3 cut(s)	62, 280, 613
BccI	CCATC	2 cut(s)	368, 625
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	94, 458
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	3 cut(s)	315, 360, 634
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	4 cut(s)	51, 88, 294, 627
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	4 cut(s)	52, 89, 295, 628
Bme1390I	CCNGG	2 cut(s)	94, 458
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BmrFI	CCNGG	2 cut(s)	94, 458
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 438
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	113, 620
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	205, 299, 421
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	94, 458
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	428, 617
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	579, 619
BseNI	ACTGG	3 cut(s)	205, 299, 421
BseRI	GAGGAG	3 cut(s)	44, 459, 462
BseSI	GKGCMC	4 cut(s)	164, 306, 492, 544
BseXI	GCAGC	3 cut(s)	62, 280, 613
BsiHKAI	GWGCWC	3 cut(s)	492, 544, 606
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	2 cut(s)	88, 570
BspCNI	CTCAG	2 cut(s)	578, 618
BspEI	TCCGGA	1 cut(s)	620
BspLI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BspPI	GGATC	4 cut(s)	141, 327, 340, 375
BsrI	ACTGG	3 cut(s)	205, 299, 421
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 458
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	565, 605
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	428, 617
BstKTI	GATC	6 cut(s)	136, 189, 335, 383, 391, 454
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BstNI	CCWGG	2 cut(s)	94, 458
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	92, 456
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	4 cut(s)	164, 306, 492, 544
BstV1I	GCAGC	3 cut(s)	62, 280, 613
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	4 cut(s)	133, 186, 332, 380
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	4 cut(s)	133, 186, 332, 380
BtsCI	GGATG	2 cut(s)	428, 617
BtsIMutI	CAGTG	2 cut(s)	306, 586
Cfr13I	GGNCC	1 cut(s)	354
CsiI	ACCWGGT	1 cut(s)	92
CviAII	CATG	4 cut(s)	70, 215, 307, 545
DdeI	CTNAG	2 cut(s)	565, 605
DpnI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
DpnII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
DraIII	CACNNNGTG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	262, 606
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	92, 456
EcoT38I	GRGCYC	2 cut(s)	262, 606
FaeI	CATG	4 cut(s)	73, 218, 310, 548
FaiI	YATR	6 cut(s)	71, 144, 210, 216, 308, 546
FatI	CATG	4 cut(s)	69, 214, 306, 544
Fnu4HI	GCNGC	4 cut(s)	51, 88, 294, 627
FokI	GGATG	2 cut(s)	415, 604
FriOI	GRGCYC	2 cut(s)	262, 606
Fsp4HI	GCNGC	4 cut(s)	51, 88, 294, 627
FspBI	CTAG	3 cut(s)	315, 360, 634
GluI	GCNGC	4 cut(s)	51, 88, 294, 627
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 438
HapII	CCGG	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	73, 218, 310, 548
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	357, 490, 542
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 599, 621
Hpy8I	GTNNAC	3 cut(s)	357, 490, 542
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	3 cut(s)	252, 501, 591
HpyCH4V	TGCA	3 cut(s)	436, 490, 542
HpyF3I	CTNAG	2 cut(s)	565, 605
HpySE526I	ACGT	3 cut(s)	252, 501, 591
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	73, 218, 310, 548
Kpn2I	TCCGGA	1 cut(s)	620
Kzo9I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
LmnI	GCTCC	2 cut(s)	301, 623
Lsp1109I	GCAGC	3 cut(s)	62, 280, 613
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 360, 634
MaeII	ACGT	3 cut(s)	252, 501, 591
MaeIII	GTNAC	2 cut(s)	509, 572
MalI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
MboI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
MboII	GAAGA	2 cut(s)	464, 529
MflI	RGATCY	4 cut(s)	133, 186, 332, 380
MhlI	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
MluCI	AATT	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	94, 458
MvaI	CCWGG	2 cut(s)	94, 458
NdeII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
NlaIII	CATG	4 cut(s)	73, 218, 310, 548
NlaIV	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	4 cut(s)	52, 89, 295, 628
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	92, 456
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	92, 456
PspN4I	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	4 cut(s)	133, 186, 332, 380
PvuII	CAGCTG	2 cut(s)	53, 199
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	4 cut(s)	51, 88, 294, 627
Sau3AI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	94, 458
SduI	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 599
SmoI	CTYRAG	3 cut(s)	128, 261, 599
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	88, 570
SspMI	CTAG	3 cut(s)	315, 360, 634
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	92, 456
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	3 cut(s)	255, 504, 594
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	100, 123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	306, 586
TseI	GCWGC	3 cut(s)	50, 293, 626
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	306, 586
VneI	GTGCAC	2 cut(s)	488, 540
VpaK11BI	GGWCC	1 cut(s)	354
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	315, 360, 634
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.