Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

35028052 .. 35028915

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCACCTGGATGCTAGGTTCGTGGTTGGTGTGGTTGGAAATATCATCTCTGGCGGGCTTTTTCTCTCTCCAATACCTACGTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCTACAGTGTTGAACTGTTTGTTATGGTGTTACTATGGTTTACCATTTATTAATCCAAACAGCATTTTAGTTGTCACCATTAATGGAATTGGGTTACTTATAGAGCTTATATATCTGGGCATATTCTTCTATTATACTTCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTGTATGTGAACTAGTTTTCTTTGGGGCTGTTGTGGCTGCAACTATGTTGGCAATACCCGAGCATAAGATGAAGATGAATCGACATTTGAGGGCTGTTGTAATTGGTATTATCTGTGACTTTTTCAATGTCCTCATGTATAGCTCTCCTCTATTCATCTTGAGAGATGTCTTTAAAACAAAGAGTGTGCAATACATGCCATTCTCACTCTCGGTTGCTAACTTTCTGAATGGTTGTTGCTGGACTTCCTATGCTCTTATTGGAAAAGTGGACTACTTTATTTTGGTTAGCAACGGTCTCGGTGCAATCGCTGGAGCAATTCAATTGATAGTTTATGCAATATACTACAAATCTACACCAAAAAATGAAGACCCCACTGACAAGGCTACTAATGAAGTGCAGCTCACAACTATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

243

Amino Acids

27.2

Weight (kDa)

8.95

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 96	1.8e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 222	7e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	154, 439, 635
AhlI	ACTAGT	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	9
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	4 cut(s)	119, 247, 456, 715
AluI	AGCT	4 cut(s)	119, 247, 456, 715
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	350, 712
AseI	ATTAAT	2 cut(s)	192, 222
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	337, 724
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	325
BfaI	CTAG	2 cut(s)	18, 326
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	351, 713
BlsI	GCNGC	2 cut(s)	352, 714
Bme1390I	CCNGG	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	337, 724
BsgI	GTGCAG	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	614
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	614
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	148, 158, 608
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 508
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	337, 724
BstV2I	GAAGAC	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	153, 687
Cac8I	GCNNGC	1 cut(s)	59
CviAII	CATG	2 cut(s)	448, 508
CviJI	RGCY	9 cut(s)	61, 119, 247, 341, 350, 407, 456, 698, 715
CviKI_1	RGCY	9 cut(s)	61, 119, 247, 341, 350, 407, 456, 698, 715
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	451, 511
FatI	CATG	2 cut(s)	447, 507
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	351, 713
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	351, 713
FspBI	CTAG	2 cut(s)	18, 326
GluI	GCNGC	2 cut(s)	351, 713
GsuI	CTGGAG	1 cut(s)	645
Hin1II	CATG	2 cut(s)	451, 511
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	4 cut(s)	7, 182, 323, 583
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	4 cut(s)	7, 182, 323, 583
HpyCH4III	ACNGT	3 cut(s)	148, 158, 608
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	6 cut(s)	7, 353, 502, 617, 650, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 508
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	451, 511
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	626
LpnPI	CCDG	5 cut(s)	23, 39, 242, 538, 609
Lsp1109I	GCAGC	2 cut(s)	337, 724
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	18, 326
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	4 cut(s)	170, 214, 234, 428
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	259, 397, 692
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	4 cut(s)	228, 414, 630, 635
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	291, 396, 455, 471
MseI	TTAA	3 cut(s)	192, 222, 486
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	347, 508
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	451, 511
NmuCI	GTSAC	2 cut(s)	214, 428
NspI	RCATGY	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	352, 714
PshBI	ATTAAT	2 cut(s)	192, 222
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	192, 222, 486
SatI	GCNGC	2 cut(s)	351, 713
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	325
Sse9I	AATT	4 cut(s)	228, 414, 630, 635
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	18, 326
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	148, 158, 608
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	123, 394
TasI	AATT	4 cut(s)	228, 414, 630, 635
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	192, 222, 486
Tru9I	TTAA	3 cut(s)	192, 222, 486
TscAI	CASTG	2 cut(s)	153, 694
TseFI	GTSAC	2 cut(s)	214, 428
TseI	GCWGC	2 cut(s)	350, 712
Tsp45I	GTSAC	2 cut(s)	214, 428
TspDTI	ATGAA	6 cut(s)	76, 398, 404, 457, 693, 720
TspRI	CASTG	2 cut(s)	153, 694
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	2 cut(s)	192, 222
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	2 cut(s)	18, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.